Wall clock time and date at job start Thu Apr 9 2020 12:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86807 * 119.99794 * 2 1 4 4 H 1.48504 * 109.46929 * 90.00524 * 3 2 1 5 5 H 1.48498 * 109.46942 * 209.99763 * 3 2 1 6 6 H 1.48497 * 109.47074 * 330.00180 * 3 2 1 7 7 C 1.37878 * 120.00307 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99459 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99992 * 179.97438 * 7 2 1 10 10 N 1.46897 * 109.46735 * 174.93774 * 9 7 2 11 11 C 1.47015 * 111.00438 * 301.11917 * 10 9 7 12 12 C 1.53100 * 109.26094 * 182.39177 * 11 10 9 13 13 O 1.43011 * 109.25973 * 303.15432 * 12 11 10 14 14 C 1.43018 * 113.73738 * 58.66656 * 13 12 11 15 15 C 1.47015 * 111.00160 * 64.75873 * 10 9 7 16 16 H 1.09002 * 109.50221 * 297.53650 * 15 10 9 17 17 C 1.50692 * 109.50613 * 57.62363 * 15 10 9 18 18 C 1.38240 * 120.00345 * 39.73319 * 17 15 10 19 19 C 1.38231 * 120.00409 * 179.76495 * 18 17 15 20 20 C 1.38238 * 119.99874 * 0.48421 * 19 18 17 21 21 C 1.38236 * 119.99829 * 359.78556 * 20 19 18 22 22 C 1.38232 * 120.00083 * 359.96165 * 21 20 19 23 23 H 0.97003 * 119.99849 * 359.97438 * 1 2 3 24 24 H 1.08994 * 109.47043 * 294.94153 * 9 7 2 25 25 H 1.09005 * 109.46704 * 54.94231 * 9 7 2 26 26 H 1.08994 * 109.50767 * 302.33245 * 11 10 9 27 27 H 1.09006 * 109.50441 * 62.46109 * 11 10 9 28 28 H 1.09002 * 109.50738 * 183.21585 * 12 11 10 29 29 H 1.08999 * 109.50058 * 63.08878 * 12 11 10 30 30 H 1.09001 * 109.50768 * 181.39472 * 14 13 12 31 31 H 1.08999 * 109.50752 * 61.26606 * 14 13 12 32 32 H 1.08007 * 119.99384 * 359.97438 * 18 17 15 33 33 H 1.07997 * 120.00246 * 180.24958 * 19 18 17 34 34 H 1.07994 * 119.99895 * 179.77063 * 20 19 18 35 35 H 1.07997 * 120.00019 * 179.97438 * 21 20 19 36 36 H 1.08000 * 119.99787 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 4.0013 -2.5735 0.1206 11 6 3.5087 -3.2005 1.3557 12 6 4.0896 -4.6123 1.4719 13 8 3.7397 -5.3637 0.3065 14 6 4.2044 -4.7819 -0.9146 15 6 3.6247 -3.3719 -1.0550 16 1 2.5383 -3.4302 -1.1225 17 6 4.1722 -2.7234 -2.3001 18 6 5.4358 -2.1628 -2.2891 19 6 5.9400 -1.5721 -3.4327 20 6 5.1767 -1.5332 -4.5845 21 6 3.9109 -2.0888 -4.5940 22 6 3.4088 -2.6841 -3.4519 23 1 -0.4850 0.8401 0.0004 24 1 3.8745 -0.7604 -0.9329 25 1 3.8752 -0.6038 0.8401 26 1 3.8206 -2.6067 2.2148 27 1 2.4204 -3.2560 1.3267 28 1 3.6822 -5.1018 2.3565 29 1 5.1748 -4.5535 1.5549 30 1 3.8801 -5.3942 -1.7561 31 1 5.2930 -4.7281 -0.9010 32 1 6.0304 -2.1893 -1.3878 33 1 6.9287 -1.1378 -3.4252 34 1 5.5691 -1.0685 -5.4769 35 1 3.3144 -2.0580 -5.4938 36 1 2.4197 -3.1178 -3.4593 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076118913.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:20:31 Heat of formation + Delta-G solvation = -10.673731 kcal Electronic energy + Delta-G solvation = -18543.476209 eV Core-core repulsion = 15799.614831 eV Total energy + Delta-G solvation = -2743.861378 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.71467 -38.09729 -35.39333 -32.57085 -31.95691 -30.46636 -29.10755 -28.30948 -25.32528 -23.75428 -22.29116 -21.64036 -21.13718 -19.17285 -16.99036 -16.42020 -15.79448 -15.71443 -15.00574 -14.84661 -14.30210 -14.09461 -13.89230 -13.44589 -12.95374 -12.75720 -12.47486 -12.25166 -12.00510 -11.76319 -11.17436 -11.10077 -10.91491 -10.59085 -10.55195 -10.25929 -10.09499 -10.03096 -9.55595 -9.24031 -8.62466 -8.46098 -8.17030 -7.35024 -6.12688 -4.12121 1.78268 1.84933 3.25102 3.33261 3.38100 4.18456 4.24090 4.37715 4.71228 5.20445 5.23096 5.33107 5.34741 5.49623 5.53552 5.60434 5.68644 5.80754 5.82056 5.95465 5.99767 6.08491 6.24628 6.40216 6.43269 6.59324 6.72073 6.80074 6.89603 6.92295 7.05991 7.13229 7.42155 7.51135 7.51216 7.92216 7.95540 8.40712 8.88724 9.50257 11.00158 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.014925 B = 0.011533 C = 0.007701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.645092 B = 2427.186791 C = 3634.823743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.075 3.925 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.264 1.264 6 H -0.287 1.287 7 C -0.548 4.548 8 H 0.074 0.926 9 C 0.152 3.848 10 N -0.525 5.525 11 C 0.024 3.976 12 C 0.063 3.937 13 O -0.389 6.389 14 C 0.075 3.925 15 C 0.090 3.910 16 H 0.069 0.931 17 C -0.054 4.054 18 C -0.094 4.094 19 C -0.131 4.131 20 C -0.130 4.130 21 C -0.126 4.126 22 C -0.105 4.105 23 H 0.263 0.737 24 H 0.036 0.964 25 H 0.024 0.976 26 H 0.077 0.923 27 H 0.058 0.942 28 H 0.089 0.911 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.053 0.947 32 H 0.127 0.873 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.116 0.884 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.511 -5.934 -4.289 12.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.128 4.128 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.188 1.188 6 H -0.213 1.213 7 C -0.587 4.587 8 H 0.092 0.908 9 C 0.026 3.974 10 N -0.250 5.250 11 C -0.105 4.105 12 C -0.014 4.014 13 O -0.307 6.307 14 C -0.002 4.002 15 C -0.019 4.019 16 H 0.087 0.913 17 C -0.054 4.054 18 C -0.112 4.112 19 C -0.149 4.149 20 C -0.148 4.148 21 C -0.144 4.144 22 C -0.124 4.124 23 H 0.073 0.927 24 H 0.053 0.947 25 H 0.042 0.958 26 H 0.095 0.905 27 H 0.077 0.923 28 H 0.108 0.892 29 H 0.068 0.932 30 H 0.108 0.892 31 H 0.071 0.929 32 H 0.145 0.855 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.134 0.866 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 10.764 -5.972 -4.243 13.021 hybrid contribution -0.586 1.465 -0.025 1.578 sum 10.178 -4.508 -4.268 11.922 Atomic orbital electron populations 1.69925 1.06315 1.26953 1.50387 1.24922 0.94639 0.99065 0.94153 0.86852 0.80585 0.83813 0.78565 1.20219 1.18826 1.21280 1.21603 0.90509 0.94594 1.51959 0.90790 1.20235 0.94829 0.85213 0.97126 1.62708 1.58076 1.03831 1.00347 1.22606 1.00001 0.94052 0.93820 1.22728 0.98966 0.91906 0.87838 1.87924 1.78989 1.49152 1.14652 1.22660 0.98064 0.92741 0.86722 1.21071 0.99288 0.92363 0.89192 0.91277 1.19623 0.94021 0.97795 0.93970 1.21049 0.95543 0.96897 0.97737 1.21080 0.99743 1.00690 0.93431 1.21022 0.95037 1.00735 0.98047 1.21016 0.95901 0.99311 0.98135 1.21050 0.99297 0.99359 0.92658 0.92699 0.94650 0.95754 0.90499 0.92339 0.89243 0.93180 0.89248 0.92909 0.85530 0.86736 0.86881 0.86603 0.86249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 2 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 3 Si 0.87 21.61 27.37 -169.99 -4.65 16.95 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.26 -6.36 6.69 56.52 0.38 -5.98 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 7 C -0.55 -15.07 8.19 -34.44 -0.28 -15.35 16 8 H 0.07 2.23 6.06 -52.49 -0.32 1.91 16 9 C 0.15 3.61 3.84 -4.98 -0.02 3.59 16 10 N -0.53 -10.64 4.07 -229.17 -0.93 -11.57 16 11 C 0.02 0.45 5.29 -3.71 -0.02 0.43 16 12 C 0.06 0.99 7.01 37.21 0.26 1.25 16 13 O -0.39 -6.79 10.83 -35.23 -0.38 -7.18 16 14 C 0.08 1.23 6.27 37.21 0.23 1.47 16 15 C 0.09 1.72 1.90 -68.76 -0.13 1.59 16 16 H 0.07 1.54 6.62 -51.93 -0.34 1.20 16 17 C -0.05 -0.97 3.72 -104.63 -0.39 -1.36 16 18 C -0.09 -1.59 8.24 -39.58 -0.33 -1.91 16 19 C -0.13 -1.98 10.05 -39.58 -0.40 -2.38 16 20 C -0.13 -1.89 10.05 -39.58 -0.40 -2.29 16 21 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 22 C -0.11 -1.83 9.67 -39.58 -0.38 -2.21 16 23 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 24 H 0.04 0.87 5.55 -51.93 -0.29 0.59 16 25 H 0.02 0.59 7.29 -51.93 -0.38 0.21 16 26 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 27 H 0.06 1.29 6.59 -51.93 -0.34 0.95 16 28 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.13 2.10 7.71 -52.48 -0.40 1.70 16 33 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 34 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 36 H 0.12 2.02 8.04 -52.49 -0.42 1.59 16 LS Contribution 287.90 15.07 4.34 4.34 Total: -1.00 -30.44 287.90 -8.24 -38.67 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -5.04 Total: 2.73 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: -2.35 Total: -17.46 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: -0.16 Total: -38.06 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -0.38 Total: -7.18 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.65 Total: 16.95 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.44 -8.24 -38.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076118913.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.999 kcal (2) G-P(sol) polarization free energy of solvation -30.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds