Wall clock time and date at job start Thu Apr 9 2020 12:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86807 * 119.99794 * 2 1 4 4 H 1.48504 * 109.46929 * 90.00524 * 3 2 1 5 5 H 1.48498 * 109.46942 * 209.99763 * 3 2 1 6 6 H 1.48497 * 109.47074 * 330.00180 * 3 2 1 7 7 C 1.37878 * 120.00307 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99459 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99992 * 179.97438 * 7 2 1 10 10 N 1.46897 * 109.46735 * 174.93774 * 9 7 2 11 11 C 1.47015 * 111.00438 * 301.11917 * 10 9 7 12 12 C 1.53100 * 109.26094 * 182.39177 * 11 10 9 13 13 O 1.43011 * 109.25973 * 303.15432 * 12 11 10 14 14 C 1.43018 * 113.73738 * 58.66656 * 13 12 11 15 15 C 1.47015 * 111.00160 * 64.75873 * 10 9 7 16 16 H 1.09002 * 109.50221 * 297.53650 * 15 10 9 17 17 C 1.50692 * 109.50613 * 57.62363 * 15 10 9 18 18 C 1.38240 * 120.00345 * 39.73319 * 17 15 10 19 19 C 1.38231 * 120.00409 * 179.76495 * 18 17 15 20 20 C 1.38238 * 119.99874 * 0.48421 * 19 18 17 21 21 C 1.38236 * 119.99829 * 359.78556 * 20 19 18 22 22 C 1.38232 * 120.00083 * 359.96165 * 21 20 19 23 23 H 0.97003 * 119.99849 * 359.97438 * 1 2 3 24 24 H 1.08994 * 109.47043 * 294.94153 * 9 7 2 25 25 H 1.09005 * 109.46704 * 54.94231 * 9 7 2 26 26 H 1.08994 * 109.50767 * 302.33245 * 11 10 9 27 27 H 1.09006 * 109.50441 * 62.46109 * 11 10 9 28 28 H 1.09002 * 109.50738 * 183.21585 * 12 11 10 29 29 H 1.08999 * 109.50058 * 63.08878 * 12 11 10 30 30 H 1.09001 * 109.50768 * 181.39472 * 14 13 12 31 31 H 1.08999 * 109.50752 * 61.26606 * 14 13 12 32 32 H 1.08007 * 119.99384 * 359.97438 * 18 17 15 33 33 H 1.07997 * 120.00246 * 180.24958 * 19 18 17 34 34 H 1.07994 * 119.99895 * 179.77063 * 20 19 18 35 35 H 1.07997 * 120.00019 * 179.97438 * 21 20 19 36 36 H 1.08000 * 119.99787 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 4.0013 -2.5735 0.1206 11 6 3.5087 -3.2005 1.3557 12 6 4.0896 -4.6123 1.4719 13 8 3.7397 -5.3637 0.3065 14 6 4.2044 -4.7819 -0.9146 15 6 3.6247 -3.3719 -1.0550 16 1 2.5383 -3.4302 -1.1225 17 6 4.1722 -2.7234 -2.3001 18 6 5.4358 -2.1628 -2.2891 19 6 5.9400 -1.5721 -3.4327 20 6 5.1767 -1.5332 -4.5845 21 6 3.9109 -2.0888 -4.5940 22 6 3.4088 -2.6841 -3.4519 23 1 -0.4850 0.8401 0.0004 24 1 3.8745 -0.7604 -0.9329 25 1 3.8752 -0.6038 0.8401 26 1 3.8206 -2.6067 2.2148 27 1 2.4204 -3.2560 1.3267 28 1 3.6822 -5.1018 2.3565 29 1 5.1748 -4.5535 1.5549 30 1 3.8801 -5.3942 -1.7561 31 1 5.2930 -4.7281 -0.9010 32 1 6.0304 -2.1893 -1.3878 33 1 6.9287 -1.1378 -3.4252 34 1 5.5691 -1.0685 -5.4769 35 1 3.3144 -2.0580 -5.4938 36 1 2.4197 -3.1178 -3.4593 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076118913.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:20:31 Heat of formation + Delta-G solvation = -30.855548 kcal Electronic energy + Delta-G solvation = -18544.351359 eV Core-core repulsion = 15799.614831 eV Total energy + Delta-G solvation = -2744.736528 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.14087 -39.39205 -36.99819 -34.57589 -33.46522 -31.69680 -30.71159 -29.86015 -27.10640 -25.13669 -23.70441 -23.32800 -22.46351 -20.76862 -18.99294 -17.82544 -17.21248 -17.13120 -16.42768 -16.27257 -16.14060 -15.67219 -15.19073 -15.00664 -14.54288 -14.17516 -14.10030 -13.85700 -13.41620 -13.32112 -12.97842 -12.79209 -12.34782 -12.19606 -12.04438 -11.85533 -11.80037 -11.70085 -11.34983 -10.81724 -10.66170 -9.70932 -9.46921 -9.13231 -8.34391 -6.38394 0.53244 0.60678 1.29848 1.32099 1.43759 2.29713 2.87833 2.95778 3.00913 3.15753 3.87257 4.03922 4.09882 4.23541 4.27883 4.29674 4.36644 4.43182 4.47002 4.67111 4.73019 4.76468 4.90843 4.95212 4.97748 5.08662 5.14534 5.17642 5.27384 5.45755 5.64695 5.69022 5.80036 6.02989 6.15398 6.20626 6.26850 6.31288 6.66412 7.27416 8.82129 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.014925 B = 0.011533 C = 0.007701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.645092 B = 2427.186791 C = 3634.823743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.014 3.986 3 Si 0.943 3.057 4 H -0.264 1.264 5 H -0.249 1.249 6 H -0.285 1.285 7 C -0.542 4.542 8 H 0.029 0.971 9 C 0.164 3.836 10 N -0.514 5.514 11 C 0.022 3.978 12 C 0.069 3.931 13 O -0.403 6.403 14 C 0.081 3.919 15 C 0.094 3.906 16 H 0.021 0.979 17 C -0.075 4.075 18 C -0.105 4.105 19 C -0.128 4.128 20 C -0.126 4.126 21 C -0.129 4.129 22 C -0.131 4.131 23 H 0.265 0.735 24 H 0.033 0.967 25 H 0.029 0.971 26 H 0.087 0.913 27 H 0.015 0.985 28 H 0.114 0.886 29 H 0.075 0.925 30 H 0.103 0.897 31 H 0.073 0.927 32 H 0.129 0.871 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.138 0.862 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.627 -5.156 -5.000 15.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.184 4.184 3 Si 0.767 3.233 4 H -0.189 1.189 5 H -0.173 1.173 6 H -0.211 1.211 7 C -0.581 4.581 8 H 0.048 0.952 9 C 0.037 3.963 10 N -0.237 5.237 11 C -0.107 4.107 12 C -0.008 4.008 13 O -0.322 6.322 14 C 0.005 3.995 15 C -0.015 4.015 16 H 0.039 0.961 17 C -0.075 4.075 18 C -0.123 4.123 19 C -0.146 4.146 20 C -0.144 4.144 21 C -0.146 4.146 22 C -0.150 4.150 23 H 0.074 0.926 24 H 0.051 0.949 25 H 0.047 0.953 26 H 0.105 0.895 27 H 0.034 0.966 28 H 0.132 0.868 29 H 0.093 0.907 30 H 0.121 0.879 31 H 0.091 0.909 32 H 0.147 0.853 33 H 0.164 0.836 34 H 0.166 0.834 35 H 0.156 0.844 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 13.899 -5.219 -4.948 15.650 hybrid contribution -1.603 1.139 0.154 1.972 sum 12.297 -4.080 -4.794 13.814 Atomic orbital electron populations 1.70081 1.08269 1.28032 1.52332 1.25850 0.95446 1.03163 0.93953 0.85762 0.79538 0.78728 0.79300 1.18874 1.17254 1.21073 1.21790 0.92663 0.92870 1.50762 0.95241 1.20019 0.91818 0.87582 0.96890 1.62734 1.57048 1.02622 1.01314 1.22694 0.97617 0.96701 0.93697 1.22826 1.00279 0.89496 0.88149 1.87910 1.79477 1.49463 1.15366 1.22702 0.98903 0.90985 0.86953 1.21036 0.96688 0.94226 0.89578 0.96109 1.19610 0.95141 0.99279 0.93513 1.21138 0.94944 0.97414 0.98830 1.21465 1.01008 0.99480 0.92666 1.21453 0.94236 0.99543 0.99186 1.21327 0.96811 0.98473 0.98033 1.21146 0.99150 1.00848 0.93816 0.92589 0.94925 0.95312 0.89493 0.96622 0.86810 0.90704 0.87890 0.90920 0.85330 0.83613 0.83392 0.84425 0.87605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.68 13.96 21.45 0.30 -59.38 16 2 C 0.01 0.81 5.47 84.65 0.46 1.28 16 3 Si 0.94 44.54 27.37 68.60 1.88 46.41 16 4 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 5 H -0.25 -11.07 6.69 99.48 0.67 -10.41 16 6 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 7 C -0.54 -31.07 8.19 25.60 0.21 -30.86 16 8 H 0.03 1.91 6.06 -2.91 -0.02 1.90 16 9 C 0.16 7.82 3.84 85.56 0.33 8.15 16 10 N -0.51 -20.91 4.07 -878.95 -3.57 -24.49 16 11 C 0.02 0.83 5.29 86.31 0.46 1.29 16 12 C 0.07 2.09 7.01 72.02 0.50 2.59 16 13 O -0.40 -13.85 10.83 -148.98 -1.61 -15.46 16 14 C 0.08 2.63 6.27 72.01 0.45 3.08 16 15 C 0.09 3.69 1.90 44.18 0.08 3.77 16 16 H 0.02 1.01 6.62 -2.39 -0.02 1.00 16 17 C -0.07 -2.72 3.72 -19.87 -0.07 -2.79 16 18 C -0.10 -3.35 8.24 22.27 0.18 -3.16 16 19 C -0.13 -3.42 10.05 22.27 0.22 -3.19 16 20 C -0.13 -3.22 10.05 22.27 0.22 -3.00 16 21 C -0.13 -3.73 10.05 22.27 0.22 -3.51 16 22 C -0.13 -4.61 9.67 22.27 0.22 -4.40 16 23 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 24 H 0.03 1.59 5.55 -2.39 -0.01 1.58 16 25 H 0.03 1.35 7.29 -2.38 -0.02 1.33 16 26 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 27 H 0.02 0.73 6.59 -2.38 -0.02 0.71 16 28 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 29 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 31 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.13 3.98 7.71 -2.91 -0.02 3.95 16 33 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 34 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 35 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 36 H 0.11 3.85 8.04 -2.91 -0.02 3.83 16 Total: -1.00 -68.35 287.90 1.50 -66.85 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 1.02 Total: 16.83 kcal Atomic # 6 Polarization: -34.26 SS G_CDS: 3.49 Total: -30.76 kcal Atomic # 7 Polarization: -80.60 SS G_CDS: -3.27 Total: -83.87 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -1.61 Total: -15.46 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.88 Total: 46.41 kcal Total: -68.35 1.50 -66.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076118913.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.990 kcal (2) G-P(sol) polarization free energy of solvation -68.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds