Wall clock time and date at job start Thu Apr 9 2020 12:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.47148 * 2 1 4 4 C 1.46900 * 111.00051 * 199.52705 * 3 2 1 5 5 C 1.50699 * 109.46855 * 66.04654 * 4 3 2 6 6 H 1.07997 * 120.00379 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99803 * 180.02562 * 5 4 3 8 8 N 1.31520 * 120.00171 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00079 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47274 * 89.99962 * 9 7 5 11 11 H 1.48504 * 109.47305 * 210.00404 * 9 7 5 12 12 H 1.48503 * 109.47082 * 329.99702 * 9 7 5 13 13 C 1.38511 * 110.99922 * 75.57361 * 3 2 1 14 14 N 1.31814 * 120.27913 * 59.04695 * 13 3 2 15 15 C 1.33753 * 121.29554 * 179.97438 * 14 13 3 16 16 C 1.34756 * 121.43424 * 359.97438 * 15 14 13 17 17 N 1.36981 * 119.84661 * 0.27564 * 16 15 14 18 18 C 1.34770 * 134.71388 * 179.74774 * 17 16 15 19 19 N 1.31076 * 107.59545 * 179.97438 * 18 17 16 20 20 N 1.28792 * 110.14519 * 359.49441 * 19 18 17 21 21 C 1.31887 * 109.30628 * 0.59366 * 20 19 18 22 22 H 1.08997 * 109.47239 * 304.87500 * 1 2 3 23 23 H 1.09005 * 109.46754 * 64.87181 * 1 2 3 24 24 H 1.09000 * 109.47020 * 184.87046 * 1 2 3 25 25 H 1.09002 * 109.46850 * 240.00189 * 2 1 3 26 26 H 1.08995 * 109.46656 * 119.99990 * 2 1 3 27 27 H 1.08992 * 109.46910 * 186.04832 * 4 3 2 28 28 H 1.09006 * 109.46811 * 306.04670 * 4 3 2 29 29 H 0.96996 * 120.00112 * 180.02562 * 8 7 5 30 30 H 1.08003 * 119.28066 * 179.97438 * 15 14 13 31 31 H 1.08003 * 120.07492 * 179.97438 * 16 15 14 32 32 H 1.07998 * 126.20529 * 0.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4138 1.4505 -0.4584 5 6 3.4855 1.0449 -1.9080 6 1 2.5855 0.7659 -2.4359 7 6 4.7002 1.0289 -2.5601 8 7 4.7627 0.6754 -3.8254 9 14 6.2571 1.5093 -1.6466 10 1 6.8572 0.3028 -1.0226 11 1 7.2259 2.1074 -2.6000 12 1 5.9259 2.4999 -0.5910 13 6 1.8814 1.9603 1.2523 14 7 2.4749 1.4234 2.2997 15 6 2.3556 1.9622 3.5180 16 6 1.6251 3.0754 3.7256 17 7 0.9814 3.6742 2.6752 18 6 0.1921 4.7582 2.5403 19 7 -0.1411 4.8509 1.2760 20 7 0.4001 3.8951 0.6034 21 6 1.1019 3.1316 1.4182 22 1 -0.3633 0.5876 0.8431 23 1 -0.3633 0.4364 -0.9305 24 1 -0.3633 -1.0240 0.0873 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.7853 2.4691 -0.3473 28 1 4.0248 0.7737 0.1390 29 1 5.6173 0.6638 -4.2840 30 1 2.8556 1.4950 4.3535 31 1 1.5433 3.4916 4.7189 32 1 -0.1103 5.4294 3.3305 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079455191.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:20:34 Heat of formation + Delta-G solvation = 146.460665 kcal Electronic energy + Delta-G solvation = -17893.726465 eV Core-core repulsion = 15085.431353 eV Total energy + Delta-G solvation = -2808.295112 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.113 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.68973 -39.50820 -37.19521 -34.08863 -32.60761 -31.32480 -30.39231 -29.66931 -27.22360 -24.49793 -24.02255 -22.58438 -22.23076 -20.65125 -18.75681 -17.65789 -17.01132 -16.70477 -16.06869 -15.37823 -15.01305 -14.76138 -14.00105 -13.87036 -13.34205 -13.05137 -12.63661 -12.43022 -11.86444 -11.74447 -11.41501 -11.30121 -10.83585 -10.63217 -10.53510 -10.49643 -10.09344 -9.86535 -9.76605 -9.37791 -8.63395 -8.28420 -7.94750 -6.09236 -4.07919 0.38282 1.08490 2.14591 2.72508 3.26428 3.33760 3.36271 3.38866 3.70017 4.03769 4.21510 4.38395 4.47206 4.63767 4.99359 5.14395 5.23180 5.42702 5.63289 5.78608 5.80838 5.88155 6.04358 6.25747 6.53084 6.62616 6.62923 6.77611 6.83510 7.42548 7.54855 7.68052 7.83574 8.50764 8.55362 8.98855 9.50054 11.03213 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.024635 B = 0.007393 C = 0.007123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.325066 B = 3786.599231 C = 3930.220502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.059 3.941 3 N -0.473 5.473 4 C 0.176 3.824 5 C -0.513 4.513 6 H 0.088 0.912 7 C 0.075 3.925 8 N -0.893 5.893 9 Si 0.872 3.128 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.269 1.269 13 C 0.434 3.566 14 N -0.503 5.503 15 C 0.070 3.930 16 C -0.022 4.022 17 N -0.377 5.377 18 C 0.120 3.880 19 N -0.259 5.259 20 N -0.221 5.221 21 C 0.152 3.848 22 H 0.034 0.966 23 H 0.067 0.933 24 H 0.055 0.945 25 H 0.107 0.893 26 H 0.043 0.957 27 H 0.027 0.973 28 H 0.006 0.994 29 H 0.265 0.735 30 H 0.179 0.821 31 H 0.176 0.824 32 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.088 3.050 17.958 19.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.067 4.067 3 N -0.197 5.197 4 C 0.052 3.948 5 C -0.551 4.551 6 H 0.106 0.894 7 C -0.128 4.128 8 N -0.532 5.532 9 Si 0.699 3.301 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.194 1.194 13 C 0.178 3.822 14 N -0.220 5.220 15 C -0.071 4.071 16 C -0.146 4.146 17 N -0.059 5.059 18 C -0.163 4.163 19 N -0.102 5.102 20 N -0.070 5.070 21 C -0.102 4.102 22 H 0.053 0.947 23 H 0.086 0.914 24 H 0.074 0.926 25 H 0.125 0.875 26 H 0.062 0.938 27 H 0.045 0.955 28 H 0.024 0.976 29 H 0.075 0.925 30 H 0.196 0.804 31 H 0.193 0.807 32 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -6.411 3.185 16.289 17.792 hybrid contribution 1.496 0.313 2.455 2.892 sum -4.915 3.498 18.744 19.691 Atomic orbital electron populations 1.21778 0.95877 1.00474 1.01994 1.22206 0.94675 0.86558 1.03236 1.59946 1.25617 1.19933 1.14220 1.20284 0.80329 0.96864 0.97355 1.20917 0.95838 1.45556 0.92800 0.89412 1.24807 0.98541 0.94717 0.94721 1.69872 1.25834 1.47881 1.09569 0.86919 0.83843 0.79329 0.80027 1.20022 1.20926 1.19433 1.19765 0.85302 0.86230 0.90891 1.68774 1.21142 1.32875 0.99185 1.22199 0.96803 0.92430 0.95621 1.22458 1.01106 0.98333 0.92659 1.43799 1.32432 1.20186 1.09440 1.26340 0.98634 0.92178 0.99198 1.74571 1.18248 1.16421 1.00927 1.75032 1.08527 1.00562 1.22897 1.23115 1.05059 1.00385 0.81674 0.94666 0.91384 0.92565 0.87511 0.93834 0.95494 0.97614 0.92460 0.80403 0.80724 0.75640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 10.07 37.16 0.37 -2.02 16 2 C 0.06 1.15 5.49 -3.82 -0.02 1.13 16 3 N -0.47 -10.33 4.42 -174.04 -0.77 -11.10 16 4 C 0.18 4.33 3.60 -4.98 -0.02 4.31 16 5 C -0.51 -14.41 8.79 -34.44 -0.30 -14.71 16 6 H 0.09 2.65 7.55 -52.49 -0.40 2.26 16 7 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 8 N -0.89 -27.00 13.96 55.43 0.77 -26.22 16 9 Si 0.87 21.46 27.47 -169.99 -4.67 16.79 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 13 C 0.43 8.41 4.61 -155.02 -0.71 7.69 16 14 N -0.50 -8.53 9.55 -12.42 -0.12 -8.65 16 15 C 0.07 0.82 11.06 -17.95 -0.20 0.62 16 16 C -0.02 -0.23 11.06 -16.49 -0.18 -0.41 16 17 N -0.38 -5.26 2.95 -63.99 -0.19 -5.45 16 18 C 0.12 1.50 12.97 -90.14 -1.17 0.33 16 19 N -0.26 -4.45 12.21 29.64 0.36 -4.09 16 20 N -0.22 -4.48 12.30 31.27 0.38 -4.10 16 21 C 0.15 2.83 7.90 -155.99 -1.23 1.59 16 22 H 0.03 0.59 7.60 -51.93 -0.39 0.19 16 23 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.11 2.23 6.58 -51.93 -0.34 1.89 16 26 H 0.04 0.80 7.43 -51.93 -0.39 0.41 16 27 H 0.03 0.70 7.11 -51.93 -0.37 0.33 16 28 H 0.01 0.15 7.55 -51.93 -0.39 -0.24 16 29 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.18 1.35 8.06 -52.48 -0.42 0.93 16 31 H 0.18 0.89 8.06 -52.48 -0.42 0.47 16 32 H 0.23 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 277.22 15.07 4.18 4.18 Total: -1.00 -34.12 277.22 -7.17 -41.28 By element: Atomic # 1 Polarization: 0.33 SS G_CDS: -3.56 Total: -3.23 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -3.56 Total: 0.58 kcal Atomic # 7 Polarization: -60.05 SS G_CDS: 0.44 Total: -59.61 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -34.12 -7.17 -41.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079455191.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.745 kcal (2) G-P(sol) polarization free energy of solvation -34.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds