Wall clock time and date at job start Thu Apr 9 2020 12:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.47148 * 2 1 4 4 C 1.46900 * 111.00051 * 199.52705 * 3 2 1 5 5 C 1.50699 * 109.46855 * 66.04654 * 4 3 2 6 6 H 1.07997 * 120.00379 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99803 * 180.02562 * 5 4 3 8 8 N 1.31520 * 120.00171 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00079 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47274 * 89.99962 * 9 7 5 11 11 H 1.48504 * 109.47305 * 210.00404 * 9 7 5 12 12 H 1.48503 * 109.47082 * 329.99702 * 9 7 5 13 13 C 1.38511 * 110.99922 * 75.57361 * 3 2 1 14 14 N 1.31814 * 120.27913 * 59.04695 * 13 3 2 15 15 C 1.33753 * 121.29554 * 179.97438 * 14 13 3 16 16 C 1.34756 * 121.43424 * 359.97438 * 15 14 13 17 17 N 1.36981 * 119.84661 * 0.27564 * 16 15 14 18 18 C 1.34770 * 134.71388 * 179.74774 * 17 16 15 19 19 N 1.31076 * 107.59545 * 179.97438 * 18 17 16 20 20 N 1.28792 * 110.14519 * 359.49441 * 19 18 17 21 21 C 1.31887 * 109.30628 * 0.59366 * 20 19 18 22 22 H 1.08997 * 109.47239 * 304.87500 * 1 2 3 23 23 H 1.09005 * 109.46754 * 64.87181 * 1 2 3 24 24 H 1.09000 * 109.47020 * 184.87046 * 1 2 3 25 25 H 1.09002 * 109.46850 * 240.00189 * 2 1 3 26 26 H 1.08995 * 109.46656 * 119.99990 * 2 1 3 27 27 H 1.08992 * 109.46910 * 186.04832 * 4 3 2 28 28 H 1.09006 * 109.46811 * 306.04670 * 4 3 2 29 29 H 0.96996 * 120.00112 * 180.02562 * 8 7 5 30 30 H 1.08003 * 119.28066 * 179.97438 * 15 14 13 31 31 H 1.08003 * 120.07492 * 179.97438 * 16 15 14 32 32 H 1.07998 * 126.20529 * 0.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4138 1.4505 -0.4584 5 6 3.4855 1.0449 -1.9080 6 1 2.5855 0.7659 -2.4359 7 6 4.7002 1.0289 -2.5601 8 7 4.7627 0.6754 -3.8254 9 14 6.2571 1.5093 -1.6466 10 1 6.8572 0.3028 -1.0226 11 1 7.2259 2.1074 -2.6000 12 1 5.9259 2.4999 -0.5910 13 6 1.8814 1.9603 1.2523 14 7 2.4749 1.4234 2.2997 15 6 2.3556 1.9622 3.5180 16 6 1.6251 3.0754 3.7256 17 7 0.9814 3.6742 2.6752 18 6 0.1921 4.7582 2.5403 19 7 -0.1411 4.8509 1.2760 20 7 0.4001 3.8951 0.6034 21 6 1.1019 3.1316 1.4182 22 1 -0.3633 0.5876 0.8431 23 1 -0.3633 0.4364 -0.9305 24 1 -0.3633 -1.0240 0.0873 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.7853 2.4691 -0.3473 28 1 4.0248 0.7737 0.1390 29 1 5.6173 0.6638 -4.2840 30 1 2.8556 1.4950 4.3535 31 1 1.5433 3.4916 4.7189 32 1 -0.1103 5.4294 3.3305 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079455191.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:20:34 Heat of formation + Delta-G solvation = 122.554332 kcal Electronic energy + Delta-G solvation = -17894.763121 eV Core-core repulsion = 15085.431353 eV Total energy + Delta-G solvation = -2809.331768 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.113 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.81996 -40.76697 -38.55889 -35.40708 -34.64518 -32.52727 -31.94328 -30.93350 -28.93344 -25.83322 -25.09389 -24.12658 -23.73927 -22.10054 -19.91201 -19.02629 -18.86336 -17.90137 -17.30655 -16.77210 -16.60870 -15.84881 -15.64245 -15.05581 -14.86268 -14.56946 -14.28816 -14.15115 -13.13733 -13.11941 -12.93858 -12.87532 -12.66558 -12.25326 -12.09684 -11.82037 -11.75655 -11.61305 -11.17682 -10.96094 -10.82490 -9.57244 -9.30607 -8.31139 -6.35426 -0.74067 0.00284 1.12184 1.30776 1.32984 1.42878 1.65190 2.23603 2.30657 2.43917 2.97360 3.01366 3.28297 3.37448 3.73717 3.97038 4.17561 4.21951 4.35500 4.50697 4.57079 4.67602 4.72867 4.76836 4.89051 4.97498 5.09826 5.28050 5.41678 5.70236 5.81397 6.14383 6.51214 6.54725 6.69802 7.26583 7.36847 8.84976 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.024635 B = 0.007393 C = 0.007123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.325066 B = 3786.599231 C = 3930.220502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.064 3.936 3 N -0.492 5.492 4 C 0.195 3.805 5 C -0.519 4.519 6 H 0.047 0.953 7 C 0.017 3.983 8 N -0.939 5.939 9 Si 0.942 3.058 10 H -0.258 1.258 11 H -0.277 1.277 12 H -0.263 1.263 13 C 0.383 3.617 14 N -0.503 5.503 15 C 0.038 3.962 16 C 0.025 3.975 17 N -0.380 5.380 18 C 0.152 3.848 19 N -0.301 5.301 20 N -0.285 5.285 21 C 0.137 3.863 22 H 0.035 0.965 23 H 0.048 0.952 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.053 0.947 27 H 0.012 0.988 28 H 0.007 0.993 29 H 0.269 0.731 30 H 0.226 0.774 31 H 0.245 0.755 32 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.674 4.170 22.833 23.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.063 4.063 3 N -0.216 5.216 4 C 0.069 3.931 5 C -0.557 4.557 6 H 0.065 0.935 7 C -0.181 4.181 8 N -0.579 5.579 9 Si 0.765 3.235 10 H -0.183 1.183 11 H -0.202 1.202 12 H -0.187 1.187 13 C 0.127 3.873 14 N -0.220 5.220 15 C -0.101 4.101 16 C -0.097 4.097 17 N -0.062 5.062 18 C -0.132 4.132 19 N -0.141 5.141 20 N -0.134 5.134 21 C -0.118 4.118 22 H 0.054 0.946 23 H 0.067 0.933 24 H 0.104 0.896 25 H 0.095 0.905 26 H 0.071 0.929 27 H 0.030 0.970 28 H 0.025 0.975 29 H 0.079 0.921 30 H 0.242 0.758 31 H 0.261 0.739 32 H 0.306 0.694 Dipole moment (debyes) X Y Z Total from point charges -6.037 4.314 21.156 22.419 hybrid contribution 1.260 0.023 1.180 1.726 sum -4.777 4.336 22.335 23.248 Atomic orbital electron populations 1.21644 0.93956 1.02070 1.00956 1.22132 0.96205 0.85898 1.02022 1.59608 1.23543 1.20946 1.17509 1.19838 0.82910 0.95379 0.94927 1.21103 0.94622 1.45210 0.94787 0.93471 1.25705 1.02267 0.94596 0.95537 1.70019 1.27014 1.49445 1.11417 0.85802 0.79188 0.79619 0.78857 1.18302 1.20214 1.18705 1.19336 0.89398 0.88139 0.90457 1.68589 1.19730 1.33125 1.00564 1.23022 0.98578 0.93824 0.94718 1.23610 0.96227 0.96046 0.93846 1.44156 1.32782 1.20383 1.08879 1.27504 0.95602 0.91130 0.98923 1.74425 1.19650 1.16687 1.03307 1.74935 1.10964 1.02449 1.25030 1.22941 1.05077 1.00283 0.83535 0.94594 0.93257 0.89626 0.90501 0.92909 0.97039 0.97519 0.92146 0.75820 0.73902 0.69412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.44 10.07 71.98 0.72 -3.72 16 2 C 0.06 2.58 5.49 86.30 0.47 3.05 16 3 N -0.49 -22.49 4.42 -704.55 -3.12 -25.61 16 4 C 0.19 9.98 3.60 85.56 0.31 10.29 16 5 C -0.52 -30.91 8.79 25.60 0.23 -30.69 16 6 H 0.05 3.10 7.55 -2.91 -0.02 3.08 16 7 C 0.02 1.04 5.47 84.65 0.46 1.50 16 8 N -0.94 -59.14 13.96 21.45 0.30 -58.85 16 9 Si 0.94 45.06 27.47 68.60 1.88 46.94 16 10 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.26 -12.17 6.54 99.48 0.65 -11.52 16 13 C 0.38 14.82 4.61 134.04 0.62 15.44 16 14 N -0.50 -16.11 9.55 -193.21 -1.85 -17.96 16 15 C 0.04 0.72 11.06 83.60 0.92 1.64 16 16 C 0.03 0.36 11.06 83.09 0.92 1.28 16 17 N -0.38 -9.11 2.95 -356.37 -1.05 -10.16 16 18 C 0.15 3.18 12.97 180.18 2.34 5.52 16 19 N -0.30 -10.05 12.21 -60.13 -0.73 -10.79 16 20 N -0.29 -11.84 12.30 -54.99 -0.68 -12.51 16 21 C 0.14 5.01 7.90 134.37 1.06 6.07 16 22 H 0.03 1.22 7.60 -2.39 -0.02 1.20 16 23 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 24 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 25 H 0.08 3.49 6.58 -2.39 -0.02 3.48 16 26 H 0.05 1.98 7.43 -2.39 -0.02 1.96 16 27 H 0.01 0.62 7.11 -2.39 -0.02 0.60 16 28 H 0.01 0.35 7.55 -2.38 -0.02 0.33 16 29 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 30 H 0.23 1.99 8.06 -2.91 -0.02 1.96 16 31 H 0.24 0.10 8.06 -2.91 -0.02 0.07 16 32 H 0.29 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -83.43 277.22 3.89 -79.54 By element: Atomic # 1 Polarization: -2.07 SS G_CDS: 1.08 Total: -1.00 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: 8.05 Total: 10.39 kcal Atomic # 7 Polarization: -128.75 SS G_CDS: -7.13 Total: -135.88 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.88 Total: 46.94 kcal Total: -83.43 3.89 -79.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079455191.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.092 kcal (2) G-P(sol) polarization free energy of solvation -83.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds