Wall clock time and date at job start Thu Apr 9 2020 12:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38236 * 120.00082 * 2 1 4 4 C 1.38228 * 119.99847 * 179.97438 * 3 2 1 5 5 C 1.50697 * 119.99983 * 180.02562 * 4 3 2 6 6 C 1.38236 * 120.00163 * 359.97438 * 4 3 2 7 7 C 1.50698 * 120.00393 * 180.02562 * 6 4 3 8 8 C 1.50706 * 109.47294 * 89.99654 * 7 6 4 9 9 O 1.21295 * 119.99584 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00020 * 180.02562 * 8 7 6 11 11 C 1.37095 * 119.99737 * 180.02562 * 10 8 7 12 12 H 1.08004 * 120.00254 * 0.02562 * 11 10 8 13 13 C 1.38949 * 119.99943 * 179.97438 * 11 10 8 14 14 N 1.31413 * 120.00099 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00243 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47026 * 90.00208 * 15 13 11 17 17 H 1.48496 * 109.47474 * 210.00244 * 15 13 11 18 18 H 1.48504 * 109.47117 * 330.00775 * 15 13 11 19 19 C 1.38237 * 119.99938 * 0.27676 * 6 4 3 20 20 C 1.50700 * 120.00162 * 179.72779 * 19 6 4 21 21 C 1.38232 * 119.99638 * 179.97438 * 2 1 3 22 22 H 1.09002 * 109.46915 * 90.00200 * 1 2 3 23 23 H 1.09000 * 109.47189 * 209.99952 * 1 2 3 24 24 H 1.08996 * 109.46972 * 330.00543 * 1 2 3 25 25 H 1.07992 * 119.99773 * 359.97438 * 3 2 1 26 26 H 1.09003 * 109.47047 * 269.97521 * 5 4 3 27 27 H 1.08992 * 109.47301 * 29.97107 * 5 4 3 28 28 H 1.09004 * 109.47311 * 149.97670 * 5 4 3 29 29 H 1.09001 * 109.46665 * 330.00035 * 7 6 4 30 30 H 1.09000 * 109.47722 * 210.00366 * 7 6 4 31 31 H 0.96994 * 119.99756 * 0.02562 * 10 8 7 32 32 H 0.96999 * 120.00288 * 179.97438 * 14 13 11 33 33 H 1.09001 * 109.47014 * 89.99702 * 20 19 6 34 34 H 1.08996 * 109.47283 * 209.99818 * 20 19 6 35 35 H 1.09004 * 109.46914 * 330.00169 * 20 19 6 36 36 H 1.07999 * 120.00384 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.3341 2.5021 0.0011 6 6 4.2717 -0.0001 0.0016 7 6 5.7787 -0.0002 0.0028 8 6 6.2800 0.0005 1.4240 9 8 5.4910 0.0006 2.3453 10 7 7.6048 0.0010 1.6713 11 6 8.0608 0.0011 2.9642 12 1 7.3583 0.0003 3.7846 13 6 9.4267 0.0011 3.2192 14 7 10.2815 0.0016 2.2210 15 14 10.0481 0.0020 4.9808 16 1 10.2126 -1.3979 5.4483 17 1 11.3562 0.7020 5.0440 18 1 9.0692 0.7024 5.8506 19 6 3.5805 -1.1972 -0.0036 20 6 4.3339 -2.5023 -0.0087 21 6 2.1981 -1.1972 0.0005 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5137 25 1 1.6583 2.1324 -0.0004 26 1 4.5165 2.8168 -1.0264 27 1 3.7447 3.2618 0.5144 28 1 5.2861 2.3718 0.5157 29 1 6.1424 0.8896 -0.5112 30 1 6.1424 -0.8904 -0.5104 31 1 8.2357 0.0014 0.9345 32 1 11.2350 0.0020 2.3990 33 1 4.5152 -2.8212 1.0178 34 1 3.7451 -3.2598 -0.5258 35 1 5.2866 -2.3699 -0.5215 36 1 1.6581 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098124015.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:20:39 Heat of formation + Delta-G solvation = -36.822309 kcal Electronic energy + Delta-G solvation = -17675.108579 eV Core-core repulsion = 14930.113313 eV Total energy + Delta-G solvation = -2744.995266 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.75112 -37.82523 -34.22041 -33.58097 -33.24424 -31.21926 -29.37402 -27.65500 -26.40835 -25.57065 -23.95142 -20.43926 -20.15531 -18.92441 -17.81892 -16.02170 -15.87444 -15.40122 -14.52186 -14.07829 -13.87182 -13.73856 -13.64342 -13.03658 -12.87685 -12.65523 -12.45839 -12.42198 -12.33069 -12.16187 -11.57569 -11.52387 -11.18644 -10.99321 -10.85842 -10.50417 -10.45077 -10.37373 -10.18120 -9.48648 -8.44626 -8.16963 -7.94406 -7.92326 -6.39740 -3.80482 1.72173 1.75787 3.18781 3.27294 3.33447 3.94344 3.99650 4.22217 5.00287 5.03000 5.11942 5.19494 5.25519 5.35715 5.45431 5.56556 5.65040 5.66975 5.81139 5.82464 5.86800 5.91440 5.97423 6.04051 6.15088 6.23916 6.26044 6.39689 6.59382 6.63071 6.87586 6.88345 7.12153 7.42034 7.56983 8.08109 8.63676 9.20087 9.57039 10.09145 10.78008 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.035543 B = 0.005235 C = 0.005089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.597195 B = 5347.813046 C = 5500.626158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.094 4.094 3 C -0.129 4.129 4 C -0.066 4.066 5 C -0.116 4.116 6 C -0.047 4.047 7 C -0.104 4.104 8 C 0.447 3.553 9 O -0.585 6.585 10 N -0.565 5.565 11 C -0.299 4.299 12 H 0.102 0.898 13 C 0.023 3.977 14 N -0.902 5.902 15 Si 0.928 3.072 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.270 1.270 19 C -0.066 4.066 20 C -0.116 4.116 21 C -0.129 4.129 22 H 0.064 0.936 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.115 0.885 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.392 0.608 32 H 0.271 0.729 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.978 -0.015 -8.061 14.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.094 4.094 3 C -0.147 4.147 4 C -0.066 4.066 5 C -0.173 4.173 6 C -0.048 4.048 7 C -0.144 4.144 8 C 0.233 3.767 9 O -0.469 6.469 10 N -0.202 5.202 11 C -0.428 4.428 12 H 0.120 0.880 13 C -0.179 4.179 14 N -0.544 5.544 15 Si 0.756 3.244 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.195 1.195 19 C -0.066 4.066 20 C -0.172 4.172 21 C -0.147 4.147 22 H 0.083 0.917 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.133 0.867 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.225 0.775 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -12.288 -0.007 -7.424 14.357 hybrid contribution 0.840 -0.008 0.485 0.970 sum -11.448 -0.015 -6.939 13.387 Atomic orbital electron populations 1.20717 0.91759 1.02336 1.01671 1.19726 0.95475 0.93223 1.00934 1.20727 0.93349 0.97136 1.03466 1.19646 0.93478 0.94804 0.98663 1.20815 1.00858 0.94002 1.01585 1.19070 0.94189 0.92166 0.99358 1.20682 0.92455 1.03592 0.97646 1.19726 0.83164 0.84290 0.89527 1.90544 1.55175 1.55346 1.45830 1.41896 1.04920 1.64529 1.08823 1.19701 0.91270 1.47486 0.84362 0.88018 1.25240 0.95726 0.97405 0.99519 1.69611 1.02807 1.50767 1.31196 0.85883 0.78066 0.78383 0.82118 1.20428 1.20926 1.19455 1.19646 0.93494 0.94815 0.98682 1.20838 0.99775 0.93832 1.02792 1.20719 0.93329 0.97137 1.03477 0.91723 0.91928 0.91930 0.86715 0.91575 0.91873 0.90840 0.89544 0.89347 0.77456 0.91909 0.90760 0.92167 0.91319 0.86710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.01 36.01 0.36 -0.81 16 2 C -0.09 -1.36 5.88 -104.62 -0.62 -1.98 16 3 C -0.13 -1.97 9.36 -39.59 -0.37 -2.34 16 4 C -0.07 -1.12 5.88 -104.63 -0.62 -1.74 16 5 C -0.12 -1.76 9.19 36.00 0.33 -1.43 16 6 C -0.05 -0.86 4.37 -104.62 -0.46 -1.32 16 7 C -0.10 -1.91 4.75 -29.03 -0.14 -2.05 16 8 C 0.45 10.69 7.37 -10.98 -0.08 10.61 16 9 O -0.58 -16.19 15.61 5.54 0.09 -16.10 16 10 N -0.57 -14.44 5.29 -10.96 -0.06 -14.50 16 11 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 12 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 13 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 14 N -0.90 -24.63 13.05 55.50 0.72 -23.91 16 15 Si 0.93 21.20 29.55 -169.99 -5.02 16.18 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 19 C -0.07 -1.13 5.88 -104.62 -0.62 -1.74 16 20 C -0.12 -1.75 9.60 36.01 0.35 -1.41 16 21 C -0.13 -1.97 9.36 -39.58 -0.37 -2.34 16 22 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 24 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 25 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.87 8.08 -51.93 -0.42 0.45 16 28 H 0.07 1.28 6.37 -51.93 -0.33 0.95 16 29 H 0.09 1.43 6.70 -51.93 -0.35 1.08 16 30 H 0.09 1.46 5.94 -51.93 -0.31 1.15 16 31 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 32 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 35 H 0.07 1.00 5.94 -51.93 -0.31 0.69 16 36 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 302.85 15.07 4.56 4.56 Total: -1.00 -31.72 302.85 -7.09 -38.81 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -4.92 Total: 9.52 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -2.47 Total: -14.57 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.67 Total: -38.40 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: 0.09 Total: -16.10 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.72 -7.09 -38.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098124015.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.988 kcal (2) G-P(sol) polarization free energy of solvation -31.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds