Wall clock time and date at job start Thu Apr 9 2020 12:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99946 * 2 1 4 4 H 1.48495 * 109.47238 * 274.06373 * 3 2 1 5 5 H 1.48507 * 109.46851 * 34.06721 * 3 2 1 6 6 H 1.48503 * 109.46695 * 154.06154 * 3 2 1 7 7 C 1.38805 * 120.00057 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00481 * 197.50468 * 7 2 1 9 9 N 1.36938 * 120.00074 * 17.50552 * 7 2 1 10 10 C 1.46925 * 120.63332 * 207.96486 * 9 7 2 11 11 C 1.53199 * 108.77491 * 233.62806 * 10 9 7 12 12 C 1.53038 * 109.31225 * 305.36638 * 11 10 9 13 13 O 1.42903 * 109.45859 * 301.35517 * 12 11 10 14 14 C 1.50696 * 109.46247 * 181.38505 * 12 11 10 15 15 C 1.38232 * 120.00262 * 149.99616 * 14 12 11 16 16 C 1.38240 * 119.99799 * 180.02562 * 15 14 12 17 17 C 1.38236 * 120.00292 * 359.97438 * 16 15 14 18 18 C 1.38234 * 119.99788 * 359.97438 * 17 16 15 19 19 C 1.38236 * 120.00017 * 0.02615 * 18 17 16 20 20 C 1.53045 * 109.53984 * 61.36060 * 12 11 10 21 21 C 1.46926 * 120.62927 * 27.98165 * 9 7 2 22 22 H 0.97003 * 119.99898 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.58893 * 113.84070 * 10 9 7 24 24 H 1.09000 * 109.70227 * 353.48342 * 10 9 7 25 25 H 1.08996 * 109.50019 * 185.41178 * 11 10 9 26 26 H 1.09006 * 109.51954 * 65.32597 * 11 10 9 27 27 H 0.96697 * 114.00189 * 180.02562 * 13 12 11 28 28 H 1.07993 * 120.00406 * 359.97438 * 15 14 12 29 29 H 1.08003 * 119.99959 * 179.97438 * 16 15 14 30 30 H 1.07996 * 119.99751 * 179.70244 * 17 16 15 31 31 H 1.08003 * 119.99866 * 179.97438 * 18 17 16 32 32 H 1.08003 * 120.00057 * 179.97438 * 19 18 17 33 33 H 1.08998 * 109.49534 * 58.59333 * 20 12 11 34 34 H 1.09002 * 109.49526 * 178.68634 * 20 12 11 35 35 H 1.09000 * 109.59151 * 246.15697 * 21 9 7 36 36 H 1.09001 * 109.58898 * 6.58443 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4118 2.0961 -1.3965 5 1 1.4932 2.6263 0.7843 6 1 3.5881 1.4168 0.6124 7 6 2.0102 -1.2021 0.0005 8 1 3.0527 -1.2237 0.2819 9 7 1.3731 -2.3607 -0.3557 10 6 1.8150 -3.6542 0.1832 11 6 2.0771 -4.6111 -0.9841 12 6 0.8273 -4.6905 -1.8638 13 8 -0.2787 -5.1425 -1.0798 14 6 1.0695 -5.6571 -2.9943 15 6 0.0145 -6.3701 -3.5321 16 6 0.2369 -7.2572 -4.5688 17 6 1.5143 -7.4307 -5.0679 18 6 2.5691 -6.7169 -4.5308 19 6 2.3467 -5.8298 -3.4941 20 6 0.5146 -3.3056 -2.4352 21 6 0.2349 -2.3340 -1.2843 22 1 -0.4850 0.8401 -0.0004 23 1 1.0379 -4.0668 0.8265 24 1 2.7314 -3.5192 0.7578 25 1 2.3126 -5.6021 -0.5964 26 1 2.9154 -4.2430 -1.5757 27 1 -1.1066 -5.2172 -1.5738 28 1 -0.9834 -6.2349 -3.1419 29 1 -0.5873 -7.8146 -4.9887 30 1 1.6887 -8.1273 -5.8746 31 1 3.5672 -6.8527 -4.9205 32 1 3.1710 -5.2724 -3.0742 33 1 1.3675 -2.9494 -3.0129 34 1 -0.3619 -3.3676 -3.0801 35 1 -0.6712 -2.6390 -0.7607 36 1 0.1092 -1.3260 -1.6795 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000115821382.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:20:40 Heat of formation + Delta-G solvation = -3.610892 kcal Electronic energy + Delta-G solvation = -18299.626372 eV Core-core repulsion = 15556.071262 eV Total energy + Delta-G solvation = -2743.555111 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.89432 -37.61968 -35.10618 -32.56847 -31.19458 -30.78571 -29.93636 -28.81347 -25.09721 -22.97813 -22.64038 -21.80480 -20.70074 -19.15217 -17.35638 -16.82108 -15.57356 -15.05091 -14.98819 -14.60450 -14.05596 -13.68305 -13.50035 -13.28592 -13.18265 -12.79339 -12.66712 -11.95061 -11.51538 -11.43425 -11.23778 -10.97574 -10.84360 -10.69599 -10.43114 -10.35191 -9.98889 -9.78677 -9.53738 -9.28624 -8.84426 -8.56039 -8.37117 -6.60538 -5.74397 -3.15981 1.44467 1.47526 3.39945 3.46939 3.48415 3.86045 4.52699 4.73339 4.84666 4.93516 5.03078 5.18667 5.39678 5.46694 5.51746 5.52994 5.67761 5.71930 6.01316 6.06194 6.14933 6.32510 6.41542 6.44140 6.51041 6.55543 6.59471 6.70252 6.76022 6.91235 7.08077 7.13151 7.41797 7.71286 7.83398 8.07579 8.49812 9.26436 9.90366 10.48557 11.34200 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.039542 B = 0.005822 C = 0.005660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.946100 B = 4808.199933 C = 4946.173637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.251 4.251 8 H 0.066 0.934 9 N -0.591 5.591 10 C 0.149 3.851 11 C -0.116 4.116 12 C 0.179 3.821 13 O -0.545 6.545 14 C -0.094 4.094 15 C -0.117 4.117 16 C -0.120 4.120 17 C -0.132 4.132 18 C -0.120 4.120 19 C -0.112 4.112 20 C -0.160 4.160 21 C 0.178 3.822 22 H 0.253 0.747 23 H 0.028 0.972 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.365 0.635 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.126 0.874 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.024 0.976 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.285 -12.785 -8.898 15.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.314 5.314 10 C 0.023 3.977 11 C -0.155 4.155 12 C 0.138 3.862 13 O -0.350 6.350 14 C -0.095 4.095 15 C -0.135 4.135 16 C -0.138 4.138 17 C -0.150 4.150 18 C -0.139 4.139 19 C -0.130 4.130 20 C -0.199 4.199 21 C 0.052 3.948 22 H 0.063 0.937 23 H 0.046 0.954 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.090 0.910 27 H 0.212 0.788 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.137 0.863 32 H 0.144 0.856 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.042 0.958 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.644 -12.631 -8.389 15.252 hybrid contribution -0.050 0.806 -0.637 1.028 sum 1.594 -11.826 -9.026 14.962 Atomic orbital electron populations 1.70049 1.05244 1.25348 1.54080 1.25035 0.95260 0.98358 1.01065 0.86293 0.79196 0.83863 0.77549 1.21555 1.21807 1.20398 1.19226 0.92748 0.84948 1.41171 0.91674 1.44034 1.36310 1.01416 1.49649 1.20821 0.97729 0.86535 0.92635 1.22058 0.94522 1.00062 0.98873 1.20016 0.87981 0.90492 0.87676 1.86632 1.19425 1.89243 1.39705 1.20882 0.93710 0.97194 0.97694 1.20904 0.98721 0.97105 0.96801 1.21067 0.96966 0.98770 0.97045 1.21081 0.93146 1.00333 1.00451 1.21140 0.98870 0.96966 0.96876 1.21161 0.96815 0.98383 0.96668 1.22862 1.00792 0.95695 1.00562 1.20678 0.89223 0.97375 0.87491 0.93723 0.95430 0.93001 0.92434 0.91035 0.78845 0.86326 0.86378 0.86520 0.86295 0.85575 0.91787 0.93129 0.95770 0.89644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.56 11.22 55.49 0.62 -25.94 16 2 C 0.00 0.04 4.90 -17.43 -0.09 -0.05 16 3 Si 0.90 21.88 29.59 -169.99 -5.03 16.85 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.25 -7.00 9.58 -15.06 -0.14 -7.14 16 8 H 0.07 1.78 7.89 -52.49 -0.41 1.36 16 9 N -0.59 -15.15 2.99 -172.32 -0.52 -15.67 16 10 C 0.15 3.30 6.27 -3.71 -0.02 3.27 16 11 C -0.12 -2.13 4.37 -26.61 -0.12 -2.25 16 12 C 0.18 3.13 0.84 -91.73 -0.08 3.05 16 13 O -0.54 -9.62 11.44 -35.23 -0.40 -10.03 16 14 C -0.09 -1.43 4.84 -104.63 -0.51 -1.94 16 15 C -0.12 -1.57 9.32 -39.58 -0.37 -1.94 16 16 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 17 C -0.13 -1.51 10.05 -39.58 -0.40 -1.91 16 18 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 19 C -0.11 -1.59 9.14 -39.58 -0.36 -1.96 16 20 C -0.16 -3.09 5.06 -26.61 -0.13 -3.23 16 21 C 0.18 4.32 5.07 -3.71 -0.02 4.30 16 22 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 23 H 0.03 0.65 7.81 -51.93 -0.41 0.24 16 24 H 0.05 1.11 7.94 -51.93 -0.41 0.69 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.07 1.27 6.60 -51.93 -0.34 0.93 16 27 H 0.36 5.09 7.33 45.56 0.33 5.42 16 28 H 0.12 1.37 6.49 -52.49 -0.34 1.03 16 29 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 30 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 31 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 32 H 0.13 1.74 6.20 -52.48 -0.33 1.41 16 33 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.02 0.62 7.81 -51.93 -0.41 0.22 16 36 H 0.09 2.31 6.06 -51.93 -0.31 2.00 16 LS Contribution 287.13 15.07 4.33 4.33 Total: -1.00 -31.08 287.13 -8.33 -39.40 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -4.30 Total: 4.52 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: -3.03 Total: -13.46 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: 0.11 Total: -41.60 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: -0.40 Total: -10.03 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.08 -8.33 -39.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115821382.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.793 kcal (2) G-P(sol) polarization free energy of solvation -31.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds