Wall clock time and date at job start Thu Apr 9 2020 12:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99946 * 2 1 4 4 H 1.48495 * 109.47238 * 274.06373 * 3 2 1 5 5 H 1.48507 * 109.46851 * 34.06721 * 3 2 1 6 6 H 1.48503 * 109.46695 * 154.06154 * 3 2 1 7 7 C 1.38805 * 120.00057 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00481 * 197.50468 * 7 2 1 9 9 N 1.36938 * 120.00074 * 17.50552 * 7 2 1 10 10 C 1.46925 * 120.63332 * 207.96486 * 9 7 2 11 11 C 1.53199 * 108.77491 * 233.62806 * 10 9 7 12 12 C 1.53038 * 109.31225 * 305.36638 * 11 10 9 13 13 O 1.42903 * 109.45859 * 301.35517 * 12 11 10 14 14 C 1.50696 * 109.46247 * 181.38505 * 12 11 10 15 15 C 1.38232 * 120.00262 * 149.99616 * 14 12 11 16 16 C 1.38240 * 119.99799 * 180.02562 * 15 14 12 17 17 C 1.38236 * 120.00292 * 359.97438 * 16 15 14 18 18 C 1.38234 * 119.99788 * 359.97438 * 17 16 15 19 19 C 1.38236 * 120.00017 * 0.02615 * 18 17 16 20 20 C 1.53045 * 109.53984 * 61.36060 * 12 11 10 21 21 C 1.46926 * 120.62927 * 27.98165 * 9 7 2 22 22 H 0.97003 * 119.99898 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.58893 * 113.84070 * 10 9 7 24 24 H 1.09000 * 109.70227 * 353.48342 * 10 9 7 25 25 H 1.08996 * 109.50019 * 185.41178 * 11 10 9 26 26 H 1.09006 * 109.51954 * 65.32597 * 11 10 9 27 27 H 0.96697 * 114.00189 * 180.02562 * 13 12 11 28 28 H 1.07993 * 120.00406 * 359.97438 * 15 14 12 29 29 H 1.08003 * 119.99959 * 179.97438 * 16 15 14 30 30 H 1.07996 * 119.99751 * 179.70244 * 17 16 15 31 31 H 1.08003 * 119.99866 * 179.97438 * 18 17 16 32 32 H 1.08003 * 120.00057 * 179.97438 * 19 18 17 33 33 H 1.08998 * 109.49534 * 58.59333 * 20 12 11 34 34 H 1.09002 * 109.49526 * 178.68634 * 20 12 11 35 35 H 1.09000 * 109.59151 * 246.15697 * 21 9 7 36 36 H 1.09001 * 109.58898 * 6.58443 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4118 2.0961 -1.3965 5 1 1.4932 2.6263 0.7843 6 1 3.5881 1.4168 0.6124 7 6 2.0102 -1.2021 0.0005 8 1 3.0527 -1.2237 0.2819 9 7 1.3731 -2.3607 -0.3557 10 6 1.8150 -3.6542 0.1832 11 6 2.0771 -4.6111 -0.9841 12 6 0.8273 -4.6905 -1.8638 13 8 -0.2787 -5.1425 -1.0798 14 6 1.0695 -5.6571 -2.9943 15 6 0.0145 -6.3701 -3.5321 16 6 0.2369 -7.2572 -4.5688 17 6 1.5143 -7.4307 -5.0679 18 6 2.5691 -6.7169 -4.5308 19 6 2.3467 -5.8298 -3.4941 20 6 0.5146 -3.3056 -2.4352 21 6 0.2349 -2.3340 -1.2843 22 1 -0.4850 0.8401 -0.0004 23 1 1.0379 -4.0668 0.8265 24 1 2.7314 -3.5192 0.7578 25 1 2.3126 -5.6021 -0.5964 26 1 2.9154 -4.2430 -1.5757 27 1 -1.1066 -5.2172 -1.5738 28 1 -0.9834 -6.2349 -3.1419 29 1 -0.5873 -7.8146 -4.9887 30 1 1.6887 -8.1273 -5.8746 31 1 3.5672 -6.8527 -4.9205 32 1 3.1710 -5.2724 -3.0742 33 1 1.3675 -2.9494 -3.0129 34 1 -0.3619 -3.3676 -3.0801 35 1 -0.6712 -2.6390 -0.7607 36 1 0.1092 -1.3260 -1.6795 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000115821382.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:20:40 Heat of formation + Delta-G solvation = -23.122804 kcal Electronic energy + Delta-G solvation = -18300.472472 eV Core-core repulsion = 15556.071262 eV Total energy + Delta-G solvation = -2744.401211 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.12272 -38.92299 -36.80729 -34.26735 -32.73210 -31.90551 -31.49160 -30.35903 -26.91878 -24.40378 -24.16068 -23.09521 -22.06700 -20.72923 -18.83406 -18.43714 -16.90761 -16.72561 -16.21147 -16.10827 -15.47721 -15.24812 -14.93924 -14.88360 -14.51267 -14.34266 -13.83346 -13.33115 -13.23194 -13.04730 -12.67553 -12.61901 -12.42925 -12.25166 -12.17073 -11.94464 -11.72195 -11.61373 -11.16438 -10.76365 -10.55133 -9.78440 -9.57011 -8.67698 -7.87324 -5.32778 0.46301 0.53483 1.46649 1.47588 1.57363 2.51160 2.88159 3.25976 3.43706 3.62064 3.78809 3.85621 4.05478 4.18082 4.22013 4.31224 4.46757 4.64234 4.65061 4.71956 4.85535 4.91220 4.94136 5.02747 5.08688 5.16704 5.22023 5.34545 5.44687 5.61470 5.63731 5.64833 5.71468 5.79148 6.14742 6.38671 6.86258 7.14816 7.85931 8.39720 9.19350 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.039542 B = 0.005822 C = 0.005660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.946100 B = 4808.199933 C = 4946.173637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.968 3.032 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.267 1.267 7 C -0.265 4.265 8 H 0.067 0.933 9 N -0.608 5.608 10 C 0.147 3.853 11 C -0.107 4.107 12 C 0.187 3.813 13 O -0.561 6.561 14 C -0.114 4.114 15 C -0.127 4.127 16 C -0.122 4.122 17 C -0.128 4.128 18 C -0.124 4.124 19 C -0.128 4.128 20 C -0.146 4.146 21 C 0.187 3.813 22 H 0.250 0.750 23 H 0.010 0.990 24 H 0.053 0.947 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.380 0.620 28 H 0.130 0.870 29 H 0.146 0.854 30 H 0.147 0.853 31 H 0.142 0.858 32 H 0.123 0.877 33 H 0.058 0.942 34 H 0.069 0.931 35 H -0.001 1.001 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.129 -14.415 -10.659 18.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.796 3.204 4 H -0.212 1.212 5 H -0.221 1.221 6 H -0.192 1.192 7 C -0.395 4.395 8 H 0.085 0.915 9 N -0.332 5.332 10 C 0.021 3.979 11 C -0.146 4.146 12 C 0.146 3.854 13 O -0.369 6.369 14 C -0.114 4.114 15 C -0.145 4.145 16 C -0.140 4.140 17 C -0.146 4.146 18 C -0.142 4.142 19 C -0.146 4.146 20 C -0.185 4.185 21 C 0.061 3.939 22 H 0.059 0.941 23 H 0.028 0.972 24 H 0.072 0.928 25 H 0.092 0.908 26 H 0.096 0.904 27 H 0.229 0.771 28 H 0.148 0.852 29 H 0.163 0.837 30 H 0.165 0.835 31 H 0.160 0.840 32 H 0.141 0.859 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.017 0.983 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.496 -14.292 -10.158 17.711 hybrid contribution -0.337 1.227 -0.090 1.275 sum 2.159 -13.065 -10.248 16.745 Atomic orbital electron populations 1.70211 1.06761 1.25821 1.55415 1.25823 0.96039 1.01570 1.01208 0.85236 0.78235 0.79448 0.77444 1.21167 1.22137 1.19153 1.19577 0.93084 0.86115 1.40759 0.91482 1.44292 1.36430 1.02089 1.50341 1.20909 0.97000 0.85900 0.94077 1.21938 0.95536 0.99592 0.97556 1.19778 0.87387 0.89961 0.88227 1.86588 1.20412 1.89124 1.40741 1.20602 0.94969 0.98114 0.97764 1.21128 0.98822 0.97208 0.97301 1.21429 0.98184 0.98140 0.96224 1.21510 0.92664 0.99914 1.00522 1.21440 1.00453 0.96200 0.96102 1.21264 0.96367 0.99311 0.97688 1.22646 1.01346 0.95945 0.98609 1.20436 0.88123 0.96810 0.88546 0.94117 0.97203 0.92814 0.90789 0.90397 0.77111 0.85172 0.83660 0.83509 0.84012 0.85939 0.92338 0.91252 0.98312 0.93028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.84 11.22 21.65 0.24 -56.60 16 2 C -0.05 -2.92 4.90 84.86 0.42 -2.51 16 3 Si 0.97 45.63 29.59 68.60 2.03 47.66 16 4 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 5 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.27 -15.06 9.58 84.03 0.81 -14.26 16 8 H 0.07 3.70 7.89 -2.91 -0.02 3.67 16 9 N -0.61 -31.97 2.99 -699.10 -2.09 -34.07 16 10 C 0.15 6.59 6.27 86.37 0.54 7.13 16 11 C -0.11 -3.89 4.37 30.67 0.13 -3.76 16 12 C 0.19 6.42 0.84 -11.51 -0.01 6.41 16 13 O -0.56 -19.58 11.44 -148.98 -1.70 -21.29 16 14 C -0.11 -3.27 4.84 -19.87 -0.10 -3.36 16 15 C -0.13 -3.06 9.32 22.27 0.21 -2.85 16 16 C -0.12 -2.42 10.05 22.27 0.22 -2.20 16 17 C -0.13 -2.41 10.05 22.27 0.22 -2.18 16 18 C -0.12 -2.63 10.05 22.27 0.22 -2.40 16 19 C -0.13 -3.38 9.14 22.27 0.20 -3.18 16 20 C -0.15 -5.68 5.06 30.67 0.16 -5.53 16 21 C 0.19 9.37 5.07 86.36 0.44 9.81 16 22 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 23 H 0.01 0.48 7.81 -2.39 -0.02 0.46 16 24 H 0.05 2.33 7.94 -2.39 -0.02 2.31 16 25 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 26 H 0.08 2.71 6.60 -2.38 -0.02 2.70 16 27 H 0.38 10.31 7.33 -74.06 -0.54 9.76 16 28 H 0.13 2.71 6.49 -2.91 -0.02 2.69 16 29 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 30 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 31 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 32 H 0.12 3.21 6.20 -2.91 -0.02 3.19 16 33 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.00 -0.07 7.81 -2.39 -0.02 -0.08 16 36 H 0.05 2.91 6.06 -2.39 -0.01 2.90 16 Total: -1.00 -67.95 287.13 2.48 -65.47 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 0.53 Total: 17.70 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: 3.47 Total: -18.88 kcal Atomic # 7 Polarization: -88.82 SS G_CDS: -1.85 Total: -90.67 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -1.70 Total: -21.29 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -67.95 2.48 -65.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115821382.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.350 kcal (2) G-P(sol) polarization free energy of solvation -67.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds