Wall clock time and date at job start Thu Apr 9 2020 12:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38244 * 119.99853 * 2 1 4 4 C 1.38241 * 119.99894 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.99596 * 180.02562 * 4 3 2 6 6 C 1.38234 * 119.99785 * 359.97438 * 4 3 2 7 7 C 1.38232 * 120.00128 * 0.02562 * 6 4 3 8 8 C 1.50706 * 119.99662 * 179.97438 * 7 6 4 9 9 H 1.08996 * 109.46822 * 20.00565 * 8 7 6 10 10 C 1.52997 * 109.47238 * 259.99783 * 8 7 6 11 11 N 1.46497 * 109.46582 * 139.99961 * 8 7 6 12 12 C 1.34784 * 120.00075 * 204.99875 * 11 8 7 13 13 O 1.21686 * 119.99536 * 0.02562 * 12 11 8 14 14 C 1.46370 * 120.00233 * 180.02562 * 12 11 8 15 15 H 1.07991 * 120.00335 * 0.02562 * 14 12 11 16 16 C 1.40051 * 119.99693 * 180.02562 * 14 12 11 17 17 N 1.30664 * 120.00240 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 119.99781 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47218 * 89.99712 * 18 16 14 20 20 H 1.48499 * 109.46930 * 209.99654 * 18 16 14 21 21 H 1.48499 * 109.47069 * 329.99495 * 18 16 14 22 22 C 1.38233 * 120.00383 * 180.23668 * 2 1 3 23 23 H 1.08997 * 109.47433 * 89.99404 * 1 2 3 24 24 H 1.09001 * 109.46875 * 210.00003 * 1 2 3 25 25 H 1.09007 * 109.47282 * 329.99751 * 1 2 3 26 26 H 1.08002 * 120.00185 * 0.02562 * 3 2 1 27 27 H 1.09002 * 109.46956 * 269.97631 * 5 4 3 28 28 H 1.08995 * 109.47209 * 29.98010 * 5 4 3 29 29 H 1.08999 * 109.46583 * 149.97954 * 5 4 3 30 30 H 1.08002 * 119.99529 * 179.97438 * 6 4 3 31 31 H 1.09002 * 109.47153 * 180.02562 * 10 8 7 32 32 H 1.09001 * 109.46832 * 60.00314 * 10 8 7 33 33 H 1.09004 * 109.47261 * 300.00295 * 10 8 7 34 34 H 0.96996 * 120.00792 * 25.00345 * 11 8 7 35 35 H 0.97005 * 120.00326 * 180.02562 * 17 16 14 36 36 H 1.08003 * 119.99676 * 0.03754 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.3339 2.5024 0.0011 6 6 4.2717 0.0001 0.0016 7 6 3.5805 -1.1970 0.0016 8 6 4.3341 -2.5021 0.0022 9 1 5.3518 -2.3338 0.3541 10 6 4.3727 -3.0694 -1.4182 11 7 3.6616 -3.4538 0.8900 12 6 4.3593 -4.4618 1.4502 13 8 5.5480 -4.5809 1.2188 14 6 3.6873 -5.4129 2.3368 15 1 2.6323 -5.3075 2.5418 16 6 4.4126 -6.4599 2.9192 17 7 5.6890 -6.5879 2.6708 18 14 3.5548 -7.6743 4.0502 19 1 3.0328 -8.8116 3.2507 20 1 4.5213 -8.1799 5.0578 21 1 2.4284 -6.9967 4.7410 22 6 2.1982 -1.1971 -0.0049 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5139 26 1 1.6581 2.1326 0.0004 27 1 4.5163 2.8171 -1.0264 28 1 3.7445 3.2620 0.5146 29 1 5.2860 2.3720 0.5156 30 1 5.3517 0.0001 0.0016 31 1 4.9174 -4.0136 -1.4177 32 1 4.8731 -2.3613 -2.0787 33 1 3.3548 -3.2377 -1.7701 34 1 2.7141 -3.3587 1.0747 35 1 6.1913 -7.3133 3.0739 36 1 1.6582 -2.1324 -0.0094 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153781412.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:21:01 Heat of formation + Delta-G solvation = -36.684539 kcal Electronic energy + Delta-G solvation = -17441.703045 eV Core-core repulsion = 14696.713754 eV Total energy + Delta-G solvation = -2744.989292 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.62790 -37.35789 -34.58066 -33.42359 -32.42507 -31.02928 -29.06341 -27.19685 -26.58329 -26.05386 -23.33092 -20.77081 -20.36004 -18.96460 -17.34210 -16.11753 -15.62445 -15.20036 -14.70359 -14.03048 -13.95868 -13.78263 -13.21383 -13.16326 -12.93584 -12.77595 -12.52592 -12.30470 -12.02293 -11.89026 -11.58423 -11.38556 -11.09310 -11.05499 -10.90417 -10.65749 -10.45523 -10.26039 -10.16176 -8.83922 -8.41888 -8.37942 -7.58018 -7.49178 -6.16322 -4.61846 1.54318 1.56065 3.15420 3.22200 3.25695 3.88408 4.12990 4.61231 4.81083 4.85247 4.96059 5.04900 5.28663 5.37793 5.43982 5.56076 5.62054 5.70501 5.71019 5.76242 5.82998 5.86919 5.95357 6.14443 6.21798 6.29373 6.33613 6.54299 6.69134 6.72429 6.83692 6.96935 7.22378 7.45403 7.95600 8.13576 8.35774 9.04726 9.56373 10.62457 10.81245 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.029121 B = 0.005221 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.277798 B = 5361.967986 C = 5804.984124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.084 4.084 3 C -0.132 4.132 4 C -0.085 4.085 5 C -0.112 4.112 6 C -0.119 4.119 7 C -0.064 4.064 8 C 0.188 3.812 9 H 0.083 0.917 10 C -0.151 4.151 11 N -0.760 5.760 12 C 0.556 3.444 13 O -0.580 6.580 14 C -0.546 4.546 15 H 0.067 0.933 16 C 0.088 3.912 17 N -0.768 5.768 18 Si 0.907 3.093 19 H -0.272 1.272 20 H -0.279 1.279 21 H -0.265 1.265 22 C -0.117 4.117 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.116 0.884 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.121 0.879 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.379 0.621 35 H 0.268 0.732 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.812 13.738 -5.354 16.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.084 4.084 3 C -0.150 4.150 4 C -0.085 4.085 5 C -0.168 4.168 6 C -0.138 4.138 7 C -0.065 4.065 8 C 0.081 3.919 9 H 0.101 0.899 10 C -0.210 4.210 11 N -0.415 5.415 12 C 0.360 3.640 13 O -0.463 6.463 14 C -0.583 4.583 15 H 0.085 0.915 16 C -0.131 4.131 17 N -0.397 5.397 18 Si 0.731 3.269 19 H -0.198 1.198 20 H -0.205 1.205 21 H -0.189 1.189 22 C -0.135 4.135 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.134 0.866 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.139 0.861 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.211 0.789 35 H 0.078 0.922 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.739 13.535 -5.484 16.084 hybrid contribution -0.890 -0.577 0.639 1.238 sum -7.629 12.959 -4.845 15.799 Atomic orbital electron populations 1.20769 0.91451 1.02654 1.02033 1.19840 0.95800 0.93084 0.99670 1.20794 0.93455 0.97221 1.03529 1.19823 0.93782 0.95058 0.99857 1.20759 0.99926 0.94126 1.02012 1.20903 0.99768 0.91305 1.01806 1.20247 0.93934 0.95310 0.96977 1.19411 0.96517 0.85074 0.90857 0.89892 1.22146 1.01311 1.01556 0.95995 1.46285 1.11906 1.31331 1.52024 1.18210 0.86360 0.79562 0.79844 1.90590 1.15830 1.74831 1.65054 1.20880 0.96317 1.11638 1.29419 0.91519 1.25691 0.94438 0.97414 0.95584 1.70018 1.07224 1.27125 1.35324 0.86392 0.79756 0.80653 0.80068 1.19758 1.20470 1.18938 1.20854 0.93737 0.97483 1.01475 0.91441 0.91422 0.91857 0.86640 0.91439 0.91847 0.91566 0.86128 0.91495 0.93211 0.93264 0.78852 0.92153 0.86031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 10.01 36.00 0.36 -0.78 16 2 C -0.08 -1.11 5.88 -104.63 -0.62 -1.73 16 3 C -0.13 -1.67 9.36 -39.58 -0.37 -2.04 16 4 C -0.09 -1.12 5.88 -104.62 -0.62 -1.73 16 5 C -0.11 -1.11 10.01 36.01 0.36 -0.75 16 6 C -0.12 -1.81 9.32 -39.58 -0.37 -2.18 16 7 C -0.06 -1.07 4.95 -104.62 -0.52 -1.59 16 8 C 0.19 3.74 2.78 -69.08 -0.19 3.55 16 9 H 0.08 1.85 7.44 -51.93 -0.39 1.47 16 10 C -0.15 -2.78 9.46 37.16 0.35 -2.43 16 11 N -0.76 -17.37 5.02 -56.35 -0.28 -17.65 16 12 C 0.56 15.95 7.71 -12.99 -0.10 15.85 16 13 O -0.58 -18.80 14.68 5.20 0.08 -18.72 16 14 C -0.55 -15.58 9.54 -35.63 -0.34 -15.92 16 15 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 16 C 0.09 2.49 5.50 -17.37 -0.10 2.39 16 17 N -0.77 -23.20 11.83 55.55 0.66 -22.55 16 18 Si 0.91 20.31 29.56 -169.99 -5.02 15.29 16 19 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 20 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 22 C -0.12 -1.78 8.71 -39.58 -0.34 -2.13 16 23 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 25 H 0.06 0.56 8.09 -51.92 -0.42 0.14 16 26 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 29 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 30 H 0.12 1.72 8.04 -52.49 -0.42 1.29 16 31 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.38 7.77 6.87 -40.82 -0.28 7.49 16 35 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 36 H 0.12 1.79 6.93 -52.48 -0.36 1.43 16 LS Contribution 308.05 15.07 4.64 4.64 Total: -1.00 -33.83 308.05 -7.63 -41.46 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -5.21 Total: 7.01 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -2.49 Total: -9.48 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: 0.37 Total: -40.20 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: 0.08 Total: -18.72 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.83 -7.63 -41.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153781412.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.778 kcal (2) G-P(sol) polarization free energy of solvation -33.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds