Wall clock time and date at job start Thu Apr 9 2020 12:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38406 * 119.82795 * 2 1 4 4 C 1.37882 * 120.17340 * 180.28339 * 3 2 1 5 5 C 1.39855 * 119.82174 * 359.44195 * 4 3 2 6 6 C 1.47171 * 120.17100 * 180.29951 * 5 4 3 7 7 O 1.21252 * 119.99577 * 0.02562 * 6 5 4 8 8 C 1.50694 * 120.00006 * 180.02562 * 6 5 4 9 9 C 1.53004 * 109.47206 * 180.02562 * 8 6 5 10 10 N 1.46504 * 109.47003 * 180.02562 * 9 8 6 11 11 C 1.46496 * 119.99930 * 269.99583 * 10 9 8 12 12 C 1.36935 * 119.99643 * 90.00107 * 10 9 8 13 13 H 1.07995 * 120.00580 * 22.34414 * 12 10 9 14 14 C 1.38809 * 119.99989 * 202.33740 * 12 10 9 15 15 N 1.31621 * 119.99768 * 11.35912 * 14 12 10 16 16 Si 1.86802 * 120.00296 * 191.35619 * 14 12 10 17 17 H 1.48497 * 109.46971 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47013 * 120.00050 * 16 14 12 19 19 H 1.48499 * 109.46914 * 240.00072 * 16 14 12 20 20 C 1.39857 * 119.65974 * 0.28352 * 5 4 3 21 21 C 1.37881 * 119.82157 * 359.97438 * 20 5 4 22 22 H 1.09002 * 109.47364 * 270.27637 * 1 2 3 23 23 H 1.08998 * 109.47270 * 30.27586 * 1 2 3 24 24 H 1.09000 * 109.47306 * 150.27270 * 1 2 3 25 25 H 1.07996 * 119.91030 * 0.02562 * 3 2 1 26 26 H 1.08000 * 120.08749 * 179.72167 * 4 3 2 27 27 H 1.09001 * 109.47584 * 300.00671 * 8 6 5 28 28 H 1.09007 * 109.47076 * 60.00218 * 8 6 5 29 29 H 1.09005 * 109.46811 * 300.00039 * 9 8 6 30 30 H 1.08993 * 109.47044 * 60.00035 * 9 8 6 31 31 H 1.08998 * 109.46730 * 94.21531 * 11 10 9 32 32 H 1.09000 * 109.46878 * 214.20810 * 11 10 9 33 33 H 1.08992 * 109.47279 * 334.21314 * 11 10 9 34 34 H 0.97004 * 120.00014 * 179.97438 * 15 14 12 35 35 H 1.07996 * 120.08947 * 180.02562 * 20 5 4 36 36 H 1.07997 * 119.91629 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2007 0.0000 4 6 3.5742 1.2090 -0.0059 5 6 4.2770 -0.0001 -0.0001 6 6 5.7487 -0.0001 0.0004 7 8 6.3550 1.0500 -0.0039 8 6 6.5022 -1.3052 0.0061 9 6 8.0065 -1.0257 0.0060 10 7 8.7389 -2.2945 0.0109 11 6 9.1044 -2.9243 1.2820 12 6 9.0819 -2.8916 -1.1727 13 1 9.1508 -2.3020 -2.0750 14 6 9.3411 -4.2546 -1.2129 15 7 9.0445 -5.0117 -0.1779 16 14 10.1108 -5.0146 -2.7360 17 1 10.3465 -3.9571 -3.7515 18 1 11.4037 -5.6488 -2.3732 19 1 9.1947 -6.0417 -3.2935 20 6 3.5741 -1.2092 0.0057 21 6 2.1953 -1.2007 0.0061 22 1 -0.3634 0.0050 1.0276 23 1 -0.3634 0.8875 -0.5181 24 1 -0.3634 -0.8924 -0.5096 25 1 1.6512 2.1335 0.0004 26 1 4.1100 2.1468 -0.0104 27 1 6.2385 -1.8731 0.8983 28 1 6.2391 -1.8805 -0.8817 29 1 8.2704 -0.4576 -0.8862 30 1 8.2692 -0.4506 0.8938 31 1 8.3401 -3.6496 1.5611 32 1 10.0636 -3.4306 1.1741 33 1 9.1814 -2.1614 2.0566 34 1 9.2254 -5.9643 -0.2061 35 1 4.1099 -2.1469 0.0106 36 1 1.6510 -2.1335 0.0110 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159188451.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:21:08 Heat of formation + Delta-G solvation = 0.341770 kcal Electronic energy + Delta-G solvation = -17148.980871 eV Core-core repulsion = 14405.597161 eV Total energy + Delta-G solvation = -2743.383710 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.89790 -38.23993 -35.58261 -33.03894 -31.93015 -31.05186 -29.60142 -27.53230 -25.84307 -24.32614 -22.63546 -22.11169 -20.48753 -19.18800 -16.97683 -16.52123 -15.58085 -15.25802 -14.85177 -14.76794 -14.22021 -13.92679 -13.83292 -13.54750 -13.36644 -12.92234 -12.43307 -12.24759 -12.14289 -11.79146 -11.66679 -11.17808 -11.01135 -10.84914 -10.73138 -10.49941 -10.10236 -9.90958 -9.77860 -9.29697 -9.03364 -8.73427 -8.53035 -6.74184 -5.70729 -3.16398 0.73907 1.34778 2.63697 3.38815 3.46359 3.48796 3.81932 4.30851 4.54381 4.67919 4.73208 4.93366 5.10337 5.32933 5.34766 5.44480 5.48667 5.57802 5.61069 5.83973 5.89924 5.91417 5.95674 6.12399 6.29630 6.41680 6.44052 6.55417 6.76602 6.80474 6.86361 6.99521 7.42658 7.75059 7.84008 7.89537 8.42730 9.26773 9.90028 10.39215 11.34403 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.029971 B = 0.004635 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.997702 B = 6039.650822 C = 6442.603807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.064 4.064 3 C -0.139 4.139 4 C -0.063 4.063 5 C -0.170 4.170 6 C 0.397 3.603 7 O -0.462 6.462 8 C -0.184 4.184 9 C 0.163 3.837 10 N -0.604 5.604 11 C 0.162 3.838 12 C -0.253 4.253 13 H 0.069 0.931 14 C 0.001 3.999 15 N -0.910 5.910 16 Si 0.904 3.096 17 H -0.278 1.278 18 H -0.290 1.290 19 H -0.290 1.290 20 C -0.064 4.064 21 C -0.136 4.136 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.124 0.876 26 H 0.131 0.869 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.049 0.951 30 H 0.042 0.958 31 H 0.028 0.972 32 H 0.045 0.955 33 H -0.003 1.003 34 H 0.251 0.749 35 H 0.138 0.862 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.707 8.402 1.746 17.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.065 4.065 3 C -0.157 4.157 4 C -0.081 4.081 5 C -0.171 4.171 6 C 0.275 3.725 7 O -0.338 6.338 8 C -0.224 4.224 9 C 0.035 3.965 10 N -0.326 5.326 11 C 0.018 3.982 12 C -0.383 4.383 13 H 0.087 0.913 14 C -0.197 4.197 15 N -0.555 5.555 16 Si 0.734 3.266 17 H -0.203 1.203 18 H -0.216 1.216 19 H -0.217 1.217 20 C -0.082 4.082 21 C -0.154 4.154 22 H 0.091 0.909 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.142 0.858 26 H 0.149 0.851 27 H 0.109 0.891 28 H 0.117 0.883 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.064 0.936 33 H 0.015 0.985 34 H 0.061 0.939 35 H 0.155 0.845 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -15.312 8.762 1.773 17.731 hybrid contribution 0.180 -0.740 -0.790 1.098 sum -15.132 8.022 0.982 17.155 Atomic orbital electron populations 1.20852 0.91125 1.02945 1.02484 1.20167 0.96168 0.93290 0.96835 1.20981 0.94012 0.97612 1.03081 1.21431 0.93928 0.98001 0.94741 1.20824 0.96025 0.94078 1.06160 1.22963 0.87645 0.91666 0.70248 1.90455 1.71210 1.35348 1.36771 1.22821 1.00420 0.94871 1.04331 1.20634 0.87501 0.88659 0.99686 1.44033 1.62585 1.22541 1.03420 1.20814 0.99926 0.93242 0.84248 1.19306 1.40506 0.90547 0.87916 0.91301 1.25019 1.01151 0.96041 0.97494 1.70079 1.50970 1.04603 1.29861 0.86190 0.78758 0.79088 0.82583 1.20307 1.21632 1.21744 1.21610 0.94168 0.97979 0.94457 1.21042 0.94172 0.97674 1.02500 0.90913 0.91435 0.91298 0.85794 0.85080 0.89139 0.88291 0.93295 0.93934 0.95392 0.93633 0.98473 0.93857 0.84457 0.85535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 10.00 36.00 0.36 -0.49 16 2 C -0.06 -0.67 5.89 -104.50 -0.62 -1.29 16 3 C -0.14 -1.52 9.68 -39.65 -0.38 -1.91 16 4 C -0.06 -0.83 9.60 -39.11 -0.38 -1.21 16 5 C -0.17 -2.51 5.87 -105.06 -0.62 -3.12 16 6 C 0.40 6.86 7.12 -30.69 -0.22 6.64 16 7 O -0.46 -8.97 15.98 5.58 0.09 -8.88 16 8 C -0.18 -3.45 4.64 -27.88 -0.13 -3.58 16 9 C 0.16 3.57 5.00 -4.04 -0.02 3.55 16 10 N -0.60 -15.58 2.93 -181.13 -0.53 -16.11 16 11 C 0.16 4.08 9.01 59.84 0.54 4.62 16 12 C -0.25 -7.05 9.67 -15.06 -0.15 -7.19 16 13 H 0.07 1.89 7.84 -52.49 -0.41 1.48 16 14 C 0.00 0.02 5.13 -17.43 -0.09 -0.07 16 15 N -0.91 -26.40 10.59 55.49 0.59 -25.81 16 16 Si 0.90 21.93 29.57 -169.99 -5.03 16.90 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 C -0.06 -0.84 9.47 -39.11 -0.37 -1.21 16 21 C -0.14 -1.52 9.68 -39.65 -0.38 -1.91 16 22 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 24 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 25 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 26 H 0.13 1.69 7.65 -52.49 -0.40 1.29 16 27 H 0.09 1.66 8.09 -51.93 -0.42 1.24 16 28 H 0.10 1.92 8.09 -51.92 -0.42 1.50 16 29 H 0.05 1.10 7.99 -51.93 -0.41 0.68 16 30 H 0.04 0.90 7.82 -51.93 -0.41 0.49 16 31 H 0.03 0.74 7.42 -51.93 -0.39 0.35 16 32 H 0.04 1.23 7.19 -51.93 -0.37 0.85 16 33 H 0.00 -0.07 7.84 -51.93 -0.41 -0.48 16 34 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.14 1.75 7.05 -52.49 -0.37 1.38 16 36 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 306.84 15.07 4.62 4.62 Total: -1.00 -31.08 306.84 -7.96 -39.03 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -5.25 Total: -2.60 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -2.45 Total: -7.17 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.06 Total: -41.92 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.09 Total: -8.88 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.08 -7.96 -39.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159188451.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.376 kcal (2) G-P(sol) polarization free energy of solvation -31.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds