Wall clock time and date at job start Thu Apr 9 2020 12:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38406 * 119.82795 * 2 1 4 4 C 1.37882 * 120.17340 * 180.28339 * 3 2 1 5 5 C 1.39855 * 119.82174 * 359.44195 * 4 3 2 6 6 C 1.47171 * 120.17100 * 180.29951 * 5 4 3 7 7 O 1.21252 * 119.99577 * 0.02562 * 6 5 4 8 8 C 1.50694 * 120.00006 * 180.02562 * 6 5 4 9 9 C 1.53004 * 109.47206 * 180.02562 * 8 6 5 10 10 N 1.46504 * 109.47003 * 180.02562 * 9 8 6 11 11 C 1.46496 * 119.99930 * 269.99583 * 10 9 8 12 12 C 1.36935 * 119.99643 * 90.00107 * 10 9 8 13 13 H 1.07995 * 120.00580 * 22.34414 * 12 10 9 14 14 C 1.38809 * 119.99989 * 202.33740 * 12 10 9 15 15 N 1.31621 * 119.99768 * 11.35912 * 14 12 10 16 16 Si 1.86802 * 120.00296 * 191.35619 * 14 12 10 17 17 H 1.48497 * 109.46971 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47013 * 120.00050 * 16 14 12 19 19 H 1.48499 * 109.46914 * 240.00072 * 16 14 12 20 20 C 1.39857 * 119.65974 * 0.28352 * 5 4 3 21 21 C 1.37881 * 119.82157 * 359.97438 * 20 5 4 22 22 H 1.09002 * 109.47364 * 270.27637 * 1 2 3 23 23 H 1.08998 * 109.47270 * 30.27586 * 1 2 3 24 24 H 1.09000 * 109.47306 * 150.27270 * 1 2 3 25 25 H 1.07996 * 119.91030 * 0.02562 * 3 2 1 26 26 H 1.08000 * 120.08749 * 179.72167 * 4 3 2 27 27 H 1.09001 * 109.47584 * 300.00671 * 8 6 5 28 28 H 1.09007 * 109.47076 * 60.00218 * 8 6 5 29 29 H 1.09005 * 109.46811 * 300.00039 * 9 8 6 30 30 H 1.08993 * 109.47044 * 60.00035 * 9 8 6 31 31 H 1.08998 * 109.46730 * 94.21531 * 11 10 9 32 32 H 1.09000 * 109.46878 * 214.20810 * 11 10 9 33 33 H 1.08992 * 109.47279 * 334.21314 * 11 10 9 34 34 H 0.97004 * 120.00014 * 179.97438 * 15 14 12 35 35 H 1.07996 * 120.08947 * 180.02562 * 20 5 4 36 36 H 1.07997 * 119.91629 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2007 0.0000 4 6 3.5742 1.2090 -0.0059 5 6 4.2770 -0.0001 -0.0001 6 6 5.7487 -0.0001 0.0004 7 8 6.3550 1.0500 -0.0039 8 6 6.5022 -1.3052 0.0061 9 6 8.0065 -1.0257 0.0060 10 7 8.7389 -2.2945 0.0109 11 6 9.1044 -2.9243 1.2820 12 6 9.0819 -2.8916 -1.1727 13 1 9.1508 -2.3020 -2.0750 14 6 9.3411 -4.2546 -1.2129 15 7 9.0445 -5.0117 -0.1779 16 14 10.1108 -5.0146 -2.7360 17 1 10.3465 -3.9571 -3.7515 18 1 11.4037 -5.6488 -2.3732 19 1 9.1947 -6.0417 -3.2935 20 6 3.5741 -1.2092 0.0057 21 6 2.1953 -1.2007 0.0061 22 1 -0.3634 0.0050 1.0276 23 1 -0.3634 0.8875 -0.5181 24 1 -0.3634 -0.8924 -0.5096 25 1 1.6512 2.1335 0.0004 26 1 4.1100 2.1468 -0.0104 27 1 6.2385 -1.8731 0.8983 28 1 6.2391 -1.8805 -0.8817 29 1 8.2704 -0.4576 -0.8862 30 1 8.2692 -0.4506 0.8938 31 1 8.3401 -3.6496 1.5611 32 1 10.0636 -3.4306 1.1741 33 1 9.1814 -2.1614 2.0566 34 1 9.2254 -5.9643 -0.2061 35 1 4.1099 -2.1469 0.0106 36 1 1.6510 -2.1335 0.0110 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159188451.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:21:08 Heat of formation + Delta-G solvation = -16.115212 kcal Electronic energy + Delta-G solvation = -17149.694499 eV Core-core repulsion = 14405.597161 eV Total energy + Delta-G solvation = -2744.097339 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.08221 -39.40937 -37.53735 -34.12901 -33.66924 -32.13789 -31.23890 -28.55646 -27.92024 -25.94552 -23.58328 -23.42652 -22.13178 -20.49268 -18.83220 -18.00075 -16.76386 -16.70300 -16.38447 -16.16591 -15.60382 -15.27265 -14.98785 -14.71990 -14.53545 -14.44761 -14.13600 -13.74797 -13.03526 -12.99487 -12.79810 -12.78935 -12.62075 -12.53472 -12.45198 -12.03179 -11.98318 -11.91355 -11.64872 -10.75607 -10.61832 -9.96528 -9.67246 -8.82335 -7.83897 -5.32729 -0.32910 0.42212 1.42612 1.46329 1.48078 1.58566 2.49981 2.81747 3.01216 3.31616 3.74624 3.86409 3.97149 4.03760 4.21715 4.24448 4.32631 4.43895 4.58859 4.74799 4.80519 4.83603 4.85778 4.87340 5.04504 5.09315 5.21984 5.25435 5.33113 5.37378 5.45313 5.58783 5.62171 5.70266 5.97019 6.31298 6.53425 7.14315 7.84155 8.29007 9.19911 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.029971 B = 0.004635 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.997702 B = 6039.650822 C = 6442.603807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.055 4.055 3 C -0.138 4.138 4 C -0.071 4.071 5 C -0.196 4.196 6 C 0.405 3.595 7 O -0.491 6.491 8 C -0.171 4.171 9 C 0.163 3.837 10 N -0.620 5.620 11 C 0.176 3.824 12 C -0.268 4.268 13 H 0.067 0.933 14 C -0.047 4.047 15 N -0.936 5.936 16 Si 0.968 3.032 17 H -0.270 1.270 18 H -0.290 1.290 19 H -0.288 1.288 20 C -0.072 4.072 21 C -0.140 4.140 22 H 0.086 0.914 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.153 0.847 26 H 0.128 0.872 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.039 0.961 30 H 0.049 0.951 31 H 0.011 0.989 32 H 0.020 0.980 33 H 0.025 0.975 34 H 0.249 0.751 35 H 0.134 0.866 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.980 8.832 1.345 20.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.055 4.055 3 C -0.156 4.156 4 C -0.090 4.090 5 C -0.197 4.197 6 C 0.286 3.714 7 O -0.369 6.369 8 C -0.211 4.211 9 C 0.036 3.964 10 N -0.343 5.343 11 C 0.031 3.969 12 C -0.398 4.398 13 H 0.085 0.915 14 C -0.242 4.242 15 N -0.582 5.582 16 Si 0.797 3.203 17 H -0.194 1.194 18 H -0.217 1.217 19 H -0.214 1.214 20 C -0.090 4.090 21 C -0.157 4.157 22 H 0.105 0.895 23 H 0.100 0.900 24 H 0.098 0.902 25 H 0.171 0.829 26 H 0.146 0.854 27 H 0.113 0.887 28 H 0.109 0.891 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.029 0.971 32 H 0.039 0.961 33 H 0.044 0.956 34 H 0.059 0.941 35 H 0.152 0.848 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -17.606 9.214 1.371 19.918 hybrid contribution 0.786 -0.819 -0.636 1.301 sum -16.820 8.395 0.735 18.813 Atomic orbital electron populations 1.20945 0.88382 1.04284 1.03708 1.20624 0.98124 0.92594 0.94196 1.21314 0.93053 0.99272 1.01958 1.21531 0.95154 0.97228 0.95050 1.20575 0.94140 0.95569 1.09419 1.22866 0.89069 0.90261 0.69235 1.90441 1.72053 1.35791 1.38646 1.22528 0.98359 0.95981 1.04197 1.20652 0.89174 0.87033 0.99516 1.44221 1.63660 1.23315 1.03064 1.20593 0.97908 0.93523 0.84903 1.19557 1.40652 0.90981 0.88579 0.91531 1.25745 1.01766 0.96388 1.00341 1.70226 1.51840 1.04588 1.31562 0.85188 0.77577 0.78167 0.79414 1.19442 1.21698 1.21443 1.21673 0.95304 0.97212 0.94818 1.21358 0.93353 0.99289 1.01746 0.89533 0.89997 0.90178 0.82946 0.85408 0.88722 0.89114 0.94255 0.93259 0.97116 0.96148 0.95605 0.94130 0.84848 0.83191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 10.00 71.24 0.71 -0.48 16 2 C -0.06 -0.97 5.89 -19.78 -0.12 -1.09 16 3 C -0.14 -2.66 9.68 22.23 0.22 -2.44 16 4 C -0.07 -1.82 9.60 22.58 0.22 -1.60 16 5 C -0.20 -5.74 5.87 -20.15 -0.12 -5.86 16 6 C 0.41 14.23 7.12 28.03 0.20 14.43 16 7 O -0.49 -19.44 15.98 -2.94 -0.05 -19.48 16 8 C -0.17 -6.52 4.64 29.85 0.14 -6.38 16 9 C 0.16 7.24 5.00 86.38 0.43 7.68 16 10 N -0.62 -32.44 2.93 -726.96 -2.13 -34.56 16 11 C 0.18 8.94 9.01 127.77 1.15 10.09 16 12 C -0.27 -15.09 9.67 84.03 0.81 -14.27 16 13 H 0.07 3.70 7.84 -2.91 -0.02 3.68 16 14 C -0.05 -2.65 5.13 84.86 0.44 -2.22 16 15 N -0.94 -55.02 10.59 21.65 0.23 -54.79 16 16 Si 0.97 45.30 29.57 68.60 2.03 47.33 16 17 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 18 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 19 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 20 C -0.07 -1.83 9.47 22.58 0.21 -1.62 16 21 C -0.14 -2.80 9.68 22.23 0.22 -2.58 16 22 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 23 H 0.08 0.65 8.08 -2.39 -0.02 0.63 16 24 H 0.08 0.69 8.08 -2.39 -0.02 0.67 16 25 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 26 H 0.13 3.26 7.65 -2.91 -0.02 3.23 16 27 H 0.09 3.52 8.09 -2.39 -0.02 3.50 16 28 H 0.09 3.62 8.09 -2.38 -0.02 3.60 16 29 H 0.04 1.80 7.99 -2.38 -0.02 1.78 16 30 H 0.05 2.10 7.82 -2.39 -0.02 2.08 16 31 H 0.01 0.57 7.42 -2.39 -0.02 0.55 16 32 H 0.02 1.10 7.19 -2.39 -0.02 1.08 16 33 H 0.03 1.13 7.84 -2.39 -0.02 1.11 16 34 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 35 H 0.13 3.40 7.05 -2.91 -0.02 3.38 16 36 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -66.69 306.84 5.64 -61.05 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: 1.05 Total: 6.80 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: 4.51 Total: -6.34 kcal Atomic # 7 Polarization: -87.45 SS G_CDS: -1.90 Total: -89.35 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.05 Total: -19.48 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -66.69 5.64 -61.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159188451.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.931 kcal (2) G-P(sol) polarization free energy of solvation -66.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds