Wall clock time and date at job start Thu Apr 9 2020 12:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50695 * 120.00450 * 2 1 4 4 N 1.46504 * 109.47075 * 125.00253 * 3 2 1 5 5 C 1.34780 * 120.00026 * 180.02562 * 4 3 2 6 6 O 1.21582 * 119.99645 * 359.97438 * 5 4 3 7 7 N 1.34773 * 119.99891 * 180.27536 * 5 4 3 8 8 C 1.39462 * 119.99930 * 175.17877 * 7 5 4 9 9 C 1.38640 * 119.64865 * 186.28271 * 8 7 5 10 10 C 1.40826 * 118.67199 * 179.97438 * 9 8 7 11 11 C 1.41544 * 120.99417 * 179.97438 * 10 9 8 12 12 H 1.08005 * 120.00032 * 201.15175 * 11 10 9 13 13 C 1.40032 * 120.00305 * 21.14843 * 11 10 9 14 14 N 1.30744 * 119.99772 * 12.10350 * 13 11 10 15 15 Si 1.86800 * 120.00346 * 192.10549 * 13 11 10 16 16 H 1.48504 * 109.47166 * 89.99717 * 15 13 11 17 17 H 1.48496 * 109.47255 * 210.00257 * 15 13 11 18 18 H 1.48499 * 109.46923 * 330.00204 * 15 13 11 19 19 C 1.41156 * 118.00811 * 0.02562 * 10 9 8 20 20 C 1.36597 * 119.12751 * 359.97438 * 19 10 9 21 21 N 1.32065 * 121.25940 * 359.75030 * 20 19 10 22 22 H 1.07993 * 120.00850 * 179.97438 * 1 2 3 23 23 H 1.08008 * 119.99375 * 359.97438 * 1 2 3 24 24 H 1.08002 * 119.99799 * 180.02562 * 2 1 3 25 25 H 1.09004 * 109.47342 * 5.00012 * 3 2 1 26 26 H 1.09002 * 109.47598 * 244.99913 * 3 2 1 27 27 H 0.96993 * 119.99803 * 359.97438 * 4 3 2 28 28 H 0.96998 * 120.00392 * 355.17466 * 7 5 4 29 29 H 1.07997 * 120.66216 * 0.02562 * 9 8 7 30 30 H 0.96999 * 120.00159 * 180.02562 * 14 13 11 31 31 H 1.08005 * 120.43801 * 179.97438 * 19 10 9 32 32 H 1.08004 * 119.36742 * 179.97438 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9939 1.3317 1.1314 5 6 3.7785 2.4088 1.3335 6 8 3.7145 3.3580 0.5765 7 7 4.6383 2.4310 2.3711 8 6 5.5207 3.5003 2.5227 9 6 6.4890 3.4552 3.5139 10 6 7.3696 4.5459 3.6483 11 6 8.3760 4.5517 4.6436 12 1 8.8094 5.4864 4.9678 13 6 8.8096 3.3458 5.2081 14 7 8.4675 2.2082 4.6620 15 14 9.8768 3.3624 6.7411 16 1 9.0111 3.3283 7.9473 17 1 10.7675 2.1742 6.7372 18 1 10.7001 4.5982 6.7577 19 6 7.2178 5.6335 2.7615 20 6 6.2334 5.5879 1.8157 21 7 5.4281 4.5461 1.7144 22 1 -0.5401 -0.9352 -0.0004 23 1 -0.5399 0.9354 0.0004 24 1 1.8499 -0.9353 -0.0004 25 1 1.3587 2.1316 0.0896 26 1 2.6214 1.4025 -0.9314 27 1 3.0446 0.5745 1.7355 28 1 4.6434 1.7034 3.0125 29 1 6.5669 2.6003 4.1692 30 1 8.7676 1.3728 5.0532 31 1 7.8715 6.4906 2.8299 32 1 6.1135 6.4182 1.1354 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663871002.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:20:47 Heat of formation + Delta-G solvation = 31.465898 kcal Electronic energy + Delta-G solvation = -16909.676948 eV Core-core repulsion = 14064.102538 eV Total energy + Delta-G solvation = -2845.574410 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.73616 -38.04628 -35.71083 -34.24035 -33.69855 -32.49358 -30.45386 -28.60015 -26.06178 -25.77089 -21.95161 -21.59074 -20.45375 -19.84825 -17.91395 -17.63198 -16.32932 -15.53107 -15.31136 -14.93815 -14.35902 -14.13557 -14.05651 -13.62093 -13.10402 -12.87927 -12.69040 -12.52958 -12.07488 -11.41421 -11.27909 -11.17945 -10.88207 -10.26421 -10.07531 -9.92959 -9.73298 -9.48307 -9.37688 -8.74023 -7.95954 -7.69433 -6.96494 -6.73504 -4.61585 1.90799 2.72616 2.83171 3.01540 3.05126 3.24024 3.27929 3.84724 3.91488 4.66343 4.68711 4.72107 4.94337 5.50198 5.67305 5.72568 5.75338 6.00983 6.33577 6.44006 6.58635 6.66132 6.77016 6.84340 6.96063 7.19511 7.33640 7.48096 7.53186 7.90732 8.14299 8.43625 8.50106 8.76157 8.78030 9.22716 9.78196 10.07711 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.033920 B = 0.004867 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.274843 B = 5752.157238 C = 6492.276882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.170 4.170 3 C 0.167 3.833 4 N -0.753 5.753 5 C 0.690 3.310 6 O -0.534 6.534 7 N -0.667 5.667 8 C 0.353 3.647 9 C -0.250 4.250 10 C 0.140 3.860 11 C -0.450 4.450 12 H 0.081 0.919 13 C 0.075 3.925 14 N -0.791 5.791 15 Si 0.915 3.085 16 H -0.267 1.267 17 H -0.277 1.277 18 H -0.261 1.261 19 C -0.286 4.286 20 C 0.119 3.881 21 N -0.554 5.554 22 H 0.101 0.899 23 H 0.100 0.900 24 H 0.114 0.886 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.392 0.608 28 H 0.404 0.596 29 H 0.139 0.861 30 H 0.280 0.720 31 H 0.101 0.899 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.460 -7.008 -1.730 11.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.188 4.188 3 C 0.043 3.957 4 N -0.411 5.411 5 C 0.390 3.610 6 O -0.405 6.405 7 N -0.315 5.315 8 C 0.127 3.873 9 C -0.276 4.276 10 C 0.131 3.869 11 C -0.481 4.481 12 H 0.100 0.900 13 C -0.144 4.144 14 N -0.417 5.417 15 Si 0.740 3.260 16 H -0.192 1.192 17 H -0.202 1.202 18 H -0.185 1.185 19 C -0.310 4.310 20 C -0.035 4.035 21 N -0.273 5.273 22 H 0.119 0.881 23 H 0.118 0.882 24 H 0.132 0.868 25 H 0.086 0.914 26 H 0.090 0.910 27 H 0.225 0.775 28 H 0.238 0.762 29 H 0.157 0.843 30 H 0.092 0.908 31 H 0.119 0.881 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.165 -6.377 -3.139 11.598 hybrid contribution 1.220 -0.950 1.899 2.449 sum -7.945 -7.327 -1.240 10.879 Atomic orbital electron populations 1.23940 0.95791 1.02222 0.99088 1.23067 0.96191 0.98362 1.01198 1.20160 0.91211 0.94841 0.89456 1.45176 1.43790 1.19713 1.32433 1.16106 0.79463 0.83113 0.82351 1.91010 1.68890 1.34348 1.46283 1.42542 1.37245 1.23823 1.27903 1.18011 0.88868 0.86931 0.93487 1.21786 0.98063 1.04527 1.03231 1.17581 0.89866 0.89689 0.89738 1.19625 1.17288 0.93779 1.17390 0.90045 1.25982 0.95794 0.94959 0.97632 1.69741 1.37198 0.98827 1.35958 0.86194 0.79738 0.78940 0.81171 1.19225 1.20213 1.18515 1.21645 1.04832 1.02439 1.02043 1.21468 0.91573 0.94462 0.95980 1.67208 1.29797 1.01401 1.28905 0.88106 0.88182 0.86821 0.91437 0.90976 0.77498 0.76182 0.84316 0.90837 0.88103 0.86082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 14.32 29.02 0.42 -0.97 16 2 C -0.17 -1.56 9.63 -36.03 -0.35 -1.91 16 3 C 0.17 2.11 6.11 -5.19 -0.03 2.08 16 4 N -0.75 -10.81 5.55 -66.41 -0.37 -11.18 16 5 C 0.69 13.85 8.52 -86.92 -0.74 13.11 16 6 O -0.53 -13.12 14.60 5.29 0.08 -13.04 16 7 N -0.67 -13.60 5.39 -15.86 -0.09 -13.69 16 8 C 0.35 8.83 7.42 -154.67 -1.15 7.68 16 9 C -0.25 -6.45 8.67 -38.46 -0.33 -6.78 16 10 C 0.14 3.72 5.65 -106.55 -0.60 3.12 16 11 C -0.45 -11.61 9.15 -37.65 -0.34 -11.95 16 12 H 0.08 2.01 7.88 -52.48 -0.41 1.60 16 13 C 0.07 1.79 5.31 -17.34 -0.09 1.70 16 14 N -0.79 -19.40 10.50 55.55 0.58 -18.81 16 15 Si 0.92 17.90 29.58 -169.99 -5.03 12.88 16 16 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 17 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 18 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 19 C -0.29 -7.14 9.85 -39.07 -0.38 -7.52 16 20 C 0.12 2.94 11.10 -18.04 -0.20 2.74 16 21 N -0.55 -14.66 7.86 -12.75 -0.10 -14.76 16 22 H 0.10 0.64 8.06 -52.49 -0.42 0.22 16 23 H 0.10 0.79 7.84 -52.48 -0.41 0.38 16 24 H 0.11 0.91 8.06 -52.49 -0.42 0.48 16 25 H 0.07 0.90 7.79 -51.93 -0.40 0.50 16 26 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.39 4.38 8.48 -40.82 -0.35 4.04 16 28 H 0.40 6.69 8.72 -40.82 -0.36 6.33 16 29 H 0.14 3.53 5.81 -52.49 -0.30 3.23 16 30 H 0.28 6.21 8.29 -40.82 -0.34 5.87 16 31 H 0.10 2.30 8.06 -52.48 -0.42 1.88 16 32 H 0.12 2.63 8.06 -52.48 -0.42 2.20 16 LS Contribution 285.73 15.07 4.31 4.31 Total: -1.00 -32.14 285.73 -7.91 -40.05 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -3.48 Total: 12.95 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -3.81 Total: 1.30 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: 0.03 Total: -58.43 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.08 Total: -13.04 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.88 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.14 -7.91 -40.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663871002.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.513 kcal (2) G-P(sol) polarization free energy of solvation -32.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds