Wall clock time and date at job start Thu Apr 9 2020 12:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47085 * 2 1 4 4 H 1.08999 * 109.46784 * 304.99757 * 3 2 1 5 5 C 1.50700 * 109.46884 * 184.99956 * 3 2 1 6 6 H 1.07998 * 120.00161 * 240.00165 * 5 3 2 7 7 C 1.37875 * 120.00031 * 60.00085 * 5 3 2 8 8 N 1.31519 * 120.00223 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 120.00057 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47000 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47143 * 119.99700 * 9 7 5 12 12 H 1.48503 * 109.47062 * 239.99870 * 9 7 5 13 13 N 1.46898 * 109.46979 * 65.00301 * 3 2 1 14 14 C 1.46850 * 110.99813 * 190.00067 * 13 3 2 15 15 C 1.53033 * 109.52490 * 174.15761 * 14 13 3 16 16 C 1.53119 * 109.27787 * 59.17980 * 15 14 13 17 17 H 1.08993 * 109.52436 * 62.24928 * 16 15 14 18 18 C 1.53000 * 109.52054 * 182.44127 * 16 15 14 19 19 C 1.53126 * 109.16048 * 302.34386 * 16 15 14 20 20 F 1.39893 * 109.50565 * 177.59620 * 19 16 15 21 21 F 1.39901 * 109.50200 * 297.71677 * 19 16 15 22 22 C 1.46845 * 111.00565 * 65.79001 * 13 3 2 23 23 H 1.09002 * 109.46787 * 300.00087 * 1 2 3 24 24 H 1.08996 * 109.46859 * 59.99656 * 1 2 3 25 25 H 1.08991 * 109.47104 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47283 * 239.99728 * 2 1 3 27 27 H 1.09005 * 109.47046 * 119.99531 * 2 1 3 28 28 H 0.96994 * 120.00201 * 179.97438 * 8 7 5 29 29 H 1.09005 * 109.46186 * 54.13967 * 14 13 3 30 30 H 1.08998 * 109.46012 * 294.17361 * 14 13 3 31 31 H 1.09004 * 109.50318 * 299.23790 * 15 14 13 32 32 H 1.09003 * 109.50170 * 179.11732 * 15 14 13 33 33 H 1.09004 * 109.47218 * 179.67860 * 18 16 15 34 34 H 1.08993 * 109.47485 * 299.67670 * 18 16 15 35 35 H 1.09002 * 109.47434 * 59.68440 * 18 16 15 36 36 H 1.08995 * 109.46315 * 65.81881 * 22 13 3 37 37 H 1.09005 * 109.45975 * 305.85394 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8888 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4063 0.3366 -2.1729 9 14 6.0051 0.8799 -1.3811 10 1 6.5988 1.5451 -0.1936 11 1 6.4962 -0.5191 -1.4626 12 1 6.4001 1.6156 -2.6091 13 7 1.6515 2.0993 1.2552 14 6 1.9124 3.5432 1.1964 15 6 1.3640 4.2139 2.4579 16 6 2.0396 3.6039 3.6892 17 1 3.1114 3.7980 3.6502 18 6 1.4515 4.2275 4.9565 19 6 1.7933 2.0927 3.7007 20 9 2.4535 1.5201 4.7931 21 9 0.4202 1.8440 3.8011 22 6 2.3293 1.4835 2.4032 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8901 28 1 3.8293 -0.0612 -2.9498 29 1 1.4230 3.9652 0.3186 30 1 2.9867 3.7157 1.1312 31 1 0.2874 4.0535 2.5166 32 1 1.5717 5.2833 2.4211 33 1 1.9289 3.7887 5.8327 34 1 1.6273 5.3031 4.9476 35 1 0.3792 4.0348 4.9925 36 1 3.4016 1.6657 2.3323 37 1 2.1426 0.4096 2.4019 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166364.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:21:05 Heat of formation + Delta-G solvation = -114.435812 kcal Electronic energy + Delta-G solvation = -19814.373878 eV Core-core repulsion = 16647.616603 eV Total energy + Delta-G solvation = -3166.757275 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.144 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.46015 -46.42114 -38.28569 -35.15334 -32.49441 -31.20644 -29.62232 -27.95093 -25.83930 -23.20266 -22.87628 -21.63579 -19.78451 -19.19438 -16.93819 -16.66119 -16.19246 -15.72062 -14.83638 -14.39438 -14.17154 -13.70329 -13.27012 -13.01832 -12.87608 -12.83649 -12.74997 -12.52924 -12.12192 -11.84119 -11.70568 -11.53305 -11.22678 -11.12278 -10.90112 -10.66705 -10.61679 -10.30674 -10.10314 -9.88657 -9.67824 -9.38565 -9.15554 -8.44084 -7.29032 -6.06876 -4.21036 3.21096 3.30344 3.32619 4.13715 4.33001 4.52537 4.72077 4.77249 4.97065 5.18502 5.35416 5.50910 5.61156 5.75346 5.80543 5.88451 6.05416 6.12882 6.18425 6.27254 6.36549 6.43613 6.48279 6.51323 6.67729 6.69223 7.06985 7.16068 7.26694 7.52093 7.68367 7.81218 8.04242 8.17627 8.34771 8.87427 9.47201 10.92684 Molecular weight = 247.14amu Principal moments of inertia in cm(-1) A = 0.025324 B = 0.008231 C = 0.007396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.417271 B = 3400.957815 C = 3784.950782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.112 4.112 3 C 0.216 3.784 4 H 0.044 0.956 5 C -0.549 4.549 6 H 0.057 0.943 7 C 0.070 3.930 8 N -0.882 5.882 9 Si 0.887 3.113 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.284 1.284 13 N -0.525 5.525 14 C 0.056 3.944 15 C -0.110 4.110 16 C -0.128 4.128 17 H 0.092 0.908 18 C -0.149 4.149 19 C 0.290 3.710 20 F -0.210 7.210 21 F -0.194 7.194 22 C 0.027 3.973 23 H 0.050 0.950 24 H 0.039 0.961 25 H 0.026 0.974 26 H 0.094 0.906 27 H 0.032 0.968 28 H 0.262 0.738 29 H 0.073 0.927 30 H 0.040 0.960 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.109 5.558 8.872 10.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.151 4.151 3 C 0.111 3.889 4 H 0.062 0.938 5 C -0.588 4.588 6 H 0.075 0.925 7 C -0.133 4.133 8 N -0.520 5.520 9 Si 0.715 3.285 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.210 1.210 13 N -0.250 5.250 14 C -0.073 4.073 15 C -0.148 4.148 16 C -0.148 4.148 17 H 0.110 0.890 18 C -0.206 4.206 19 C 0.254 3.746 20 F -0.191 7.191 21 F -0.175 7.175 22 C -0.102 4.102 23 H 0.069 0.931 24 H 0.058 0.942 25 H 0.045 0.955 26 H 0.112 0.888 27 H 0.050 0.950 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.627 5.375 8.768 10.906 hybrid contribution 1.961 -0.077 -0.150 1.968 sum -1.666 5.297 8.619 10.253 Atomic orbital electron populations 1.21717 0.98638 0.98603 1.00739 1.21624 0.92502 0.98960 1.01973 1.19321 0.93272 0.91365 0.84985 0.93783 1.21736 0.92656 1.38625 1.05738 0.92492 1.24901 0.97931 0.94841 0.95604 1.69878 1.34811 1.37954 1.09373 0.86613 0.86008 0.77827 0.78011 1.19927 1.20909 1.20965 1.62359 1.56449 1.01916 1.04245 1.21984 0.99222 0.89550 0.96535 1.21686 1.01075 0.99024 0.93053 1.22134 1.02579 0.92285 0.97769 0.88994 1.21801 1.01624 1.00785 0.96415 1.21273 0.74459 0.93497 0.85390 1.92936 1.81138 1.87000 1.57994 1.92949 1.32545 1.95402 1.96638 1.22782 0.98404 1.00697 0.88332 0.93140 0.94177 0.95518 0.88778 0.94974 0.92806 0.90819 0.94148 0.90710 0.91135 0.92326 0.91882 0.91899 0.91515 0.88971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.80 37.16 0.36 -2.49 16 2 C -0.11 -2.61 5.16 -26.73 -0.14 -2.75 16 3 C 0.22 5.11 1.71 -68.86 -0.12 4.99 16 4 H 0.04 1.15 7.99 -51.93 -0.41 0.74 16 5 C -0.55 -14.02 7.23 -34.44 -0.25 -14.27 16 6 H 0.06 1.46 5.84 -52.49 -0.31 1.15 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -24.07 11.29 55.43 0.63 -23.44 16 9 Si 0.89 20.55 29.54 -169.99 -5.02 15.52 16 10 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.53 -10.67 3.99 -228.08 -0.91 -11.58 16 14 C 0.06 1.00 5.19 -3.83 -0.02 0.98 16 15 C -0.11 -1.61 5.25 -26.65 -0.14 -1.75 16 16 C -0.13 -1.87 2.43 -90.49 -0.22 -2.09 16 17 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 18 C -0.15 -1.83 8.96 37.16 0.33 -1.49 16 19 C 0.29 5.03 1.67 -26.65 -0.04 4.98 16 20 F -0.21 -3.67 16.66 2.25 0.04 -3.63 16 21 F -0.19 -3.57 15.99 2.25 0.04 -3.54 16 22 C 0.03 0.54 4.27 -3.84 -0.02 0.52 16 23 H 0.05 1.01 7.75 -51.93 -0.40 0.61 16 24 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.09 2.44 5.95 -51.93 -0.31 2.13 16 27 H 0.03 0.74 6.22 -51.93 -0.32 0.41 16 28 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 29 H 0.07 1.32 8.02 -51.93 -0.42 0.90 16 30 H 0.04 0.77 7.29 -51.93 -0.38 0.39 16 31 H 0.07 1.12 7.91 -51.93 -0.41 0.71 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.71 7.87 -51.93 -0.41 0.30 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.79 7.75 -51.93 -0.40 0.38 16 36 H 0.07 1.37 6.37 -51.93 -0.33 1.04 16 37 H 0.09 1.90 6.12 -51.93 -0.32 1.58 16 LS Contribution 289.87 15.07 4.37 4.37 Total: -1.00 -26.43 289.87 -6.88 -33.31 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -5.67 Total: 0.60 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -0.34 Total: -11.61 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: -0.29 Total: -35.02 kcal Atomic # 9 Polarization: -7.24 SS G_CDS: 0.07 Total: -7.17 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -26.43 -6.88 -33.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166364.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.127 kcal (2) G-P(sol) polarization free energy of solvation -26.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds