Wall clock time and date at job start Thu Apr 9 2020 12:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47407 * 2 1 4 4 N 1.46904 * 109.46992 * 120.00539 * 2 1 3 5 5 C 1.46900 * 110.99696 * 274.99943 * 4 2 1 6 6 C 1.50702 * 109.47140 * 180.02562 * 5 4 2 7 7 H 1.07995 * 119.99685 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99873 * 180.02562 * 6 5 4 9 9 N 1.31522 * 119.99786 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 120.00210 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.46878 * 90.00805 * 10 8 6 12 12 H 1.48505 * 109.47095 * 210.00360 * 10 8 6 13 13 H 1.48498 * 109.47406 * 330.00884 * 10 8 6 14 14 C 1.53000 * 109.47131 * 239.99920 * 2 1 3 15 15 C 1.53002 * 109.46934 * 54.67546 * 14 2 1 16 16 C 1.52999 * 109.47349 * 294.67682 * 14 2 1 17 17 C 1.50704 * 109.46962 * 174.67256 * 14 2 1 18 18 C 1.38239 * 119.99793 * 173.91057 * 17 14 2 19 19 C 1.38231 * 120.00036 * 180.02562 * 18 17 14 20 20 C 1.38236 * 119.99849 * 359.95440 * 19 18 17 21 21 C 1.38231 * 120.00077 * 0.27679 * 20 19 18 22 22 C 1.38227 * 120.00040 * 353.88774 * 17 14 2 23 23 H 1.09001 * 109.47068 * 174.56279 * 1 2 3 24 24 H 1.08996 * 109.47233 * 294.55623 * 1 2 3 25 25 H 1.09001 * 109.47098 * 54.55973 * 1 2 3 26 26 H 1.00897 * 110.99954 * 38.95094 * 4 2 1 27 27 H 1.09006 * 109.47105 * 299.99956 * 5 4 2 28 28 H 1.08993 * 109.47342 * 59.99791 * 5 4 2 29 29 H 0.96998 * 119.99807 * 179.97438 * 9 8 6 30 30 H 1.09000 * 109.47347 * 179.97438 * 15 14 2 31 31 H 1.08994 * 109.47441 * 299.99762 * 15 14 2 32 32 H 1.09005 * 109.47336 * 59.99985 * 15 14 2 33 33 H 1.08995 * 109.47049 * 299.99520 * 16 14 2 34 34 H 1.08994 * 109.47154 * 60.00159 * 16 14 2 35 35 H 1.09009 * 109.47015 * 179.97438 * 16 14 2 36 36 H 1.08004 * 119.99776 * 359.97438 * 18 17 14 37 37 H 1.08003 * 120.00033 * 179.97438 * 19 18 17 38 38 H 1.08005 * 119.99684 * 180.02562 * 20 19 18 39 39 H 1.08002 * 120.00130 * 179.72065 * 21 20 19 40 40 H 1.07994 * 120.00269 * 0.02562 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 2.0824 0.2224 2.3469 6 6 2.5884 -0.5218 3.5557 7 1 2.8380 -1.5697 3.4793 8 6 2.7317 0.1351 4.7595 9 7 3.1729 -0.5145 5.8146 10 14 2.2994 1.9475 4.8918 11 1 0.8699 2.0891 5.2684 12 1 3.1500 2.5848 5.9290 13 1 2.5345 2.6093 3.5835 14 6 2.0400 -0.7213 -1.2492 15 6 1.4236 -0.0814 -2.4949 16 6 1.6422 -2.1972 -1.1841 17 6 3.5412 -0.6080 -1.3169 18 6 4.2425 -1.2905 -2.2934 19 6 5.6195 -1.1871 -2.3552 20 6 6.2953 -0.4004 -1.4411 21 6 5.5945 0.2782 -0.4618 22 6 4.2169 0.1786 -0.4030 23 1 -0.3633 -1.0231 -0.0974 24 1 -0.3633 0.4271 0.9347 25 1 -0.3633 0.5959 -0.8373 26 1 1.4495 -1.4980 1.4099 27 1 2.7588 1.0460 2.1183 28 1 1.0871 0.6161 2.5525 29 1 3.2741 -0.0524 6.6613 30 1 1.7872 -0.5949 -3.3849 31 1 0.3378 -0.1633 -2.4460 32 1 1.7070 0.9701 -2.5413 33 1 2.0814 -2.6530 -0.2968 34 1 0.5565 -2.2791 -1.1352 35 1 2.0052 -2.7109 -2.0744 36 1 3.7145 -1.9051 -3.0075 37 1 6.1675 -1.7206 -3.1178 38 1 7.3712 -0.3193 -1.4897 39 1 6.1228 0.8892 0.2551 40 1 3.6691 0.7117 0.3599 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299615744.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:22:14 Heat of formation + Delta-G solvation = 18.221663 kcal Electronic energy + Delta-G solvation = -18549.786031 eV Core-core repulsion = 15943.010745 eV Total energy + Delta-G solvation = -2606.775285 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.78433 -37.19457 -34.16069 -32.24162 -30.45856 -30.15649 -28.51270 -27.30311 -26.17140 -23.91745 -22.10591 -21.49448 -20.85566 -18.43585 -17.00980 -16.49354 -15.11698 -14.74896 -14.63689 -14.29750 -13.99160 -13.78687 -13.48270 -13.21505 -12.83638 -12.62117 -12.12397 -12.07861 -11.96238 -11.85650 -11.63144 -11.39825 -11.06933 -10.95820 -10.74590 -10.70142 -10.47020 -10.16550 -9.89234 -9.69082 -9.25721 -8.59778 -8.45455 -8.24504 -7.39401 -6.05442 -4.02864 1.79820 1.87964 3.27077 3.35176 3.36826 4.23550 4.41421 4.84319 4.88785 5.10697 5.27307 5.33699 5.38967 5.46947 5.55975 5.56741 5.57498 5.69618 5.80918 5.87594 5.97980 6.01175 6.06296 6.11723 6.19233 6.28511 6.33289 6.42280 6.52189 6.54585 6.68905 6.79342 6.87471 7.01009 7.04421 7.17917 7.46355 7.63549 7.92749 8.36311 8.66487 9.03957 9.56767 11.08009 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.021029 B = 0.007390 C = 0.006188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.184480 B = 3787.836828 C = 4523.558859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.086 3.914 3 H 0.072 0.928 4 N -0.669 5.669 5 C 0.164 3.836 6 C -0.512 4.512 7 H 0.079 0.921 8 C 0.068 3.932 9 N -0.900 5.900 10 Si 0.876 3.124 11 H -0.278 1.278 12 H -0.286 1.286 13 H -0.267 1.267 14 C -0.013 4.013 15 C -0.139 4.139 16 C -0.137 4.137 17 C -0.052 4.052 18 C -0.124 4.124 19 C -0.132 4.132 20 C -0.132 4.132 21 C -0.122 4.122 22 C -0.085 4.085 23 H 0.058 0.942 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.336 0.664 27 H 0.024 0.976 28 H -0.021 1.021 29 H 0.263 0.737 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.116 0.884 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.276 1.023 -17.047 17.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.025 4.025 3 H 0.090 0.910 4 N -0.298 5.298 5 C 0.036 3.964 6 C -0.550 4.550 7 H 0.097 0.903 8 C -0.133 4.133 9 N -0.540 5.540 10 Si 0.703 3.297 11 H -0.204 1.204 12 H -0.212 1.212 13 H -0.192 1.192 14 C -0.014 4.014 15 C -0.197 4.197 16 C -0.195 4.195 17 C -0.052 4.052 18 C -0.142 4.142 19 C -0.150 4.150 20 C -0.150 4.150 21 C -0.141 4.141 22 C -0.103 4.103 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.154 0.846 27 H 0.041 0.959 28 H -0.003 1.003 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.557 1.129 -16.996 17.042 hybrid contribution -1.053 1.030 0.574 1.581 sum -1.610 2.159 -16.422 16.641 Atomic orbital electron populations 1.22619 0.98114 1.01915 1.01690 1.21587 0.91860 0.97692 0.91392 0.90999 1.60655 1.55658 1.09862 1.03669 1.20022 0.94193 0.92897 0.89244 1.21051 1.43372 0.98826 0.91791 0.90323 1.24902 0.94899 0.97806 0.95699 1.69904 1.46724 1.36459 1.00863 0.86859 0.78518 0.86199 0.78115 1.20432 1.21209 1.19194 1.19488 0.91059 0.96242 0.94593 1.21949 1.00485 1.00552 0.96721 1.21880 1.00620 0.94664 1.02297 1.19632 0.94636 0.96261 0.94702 1.20877 0.93995 1.00324 0.98968 1.20943 0.94402 1.00061 0.99601 1.21026 0.99237 0.98484 0.96225 1.21188 0.94766 0.99997 0.98100 1.21406 0.93953 0.97677 0.97249 0.92327 0.92612 0.92680 0.84577 0.95858 1.00334 0.92710 0.92794 0.92229 0.92843 0.91059 0.92839 0.93310 0.86988 0.87050 0.87019 0.86580 0.84716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.60 8.37 37.16 0.31 -2.29 16 2 C 0.09 1.36 1.21 -67.71 -0.08 1.28 16 3 H 0.07 1.22 6.52 -51.93 -0.34 0.88 16 4 N -0.67 -13.09 4.29 -107.99 -0.46 -13.55 16 5 C 0.16 3.85 4.01 -4.97 -0.02 3.83 16 6 C -0.51 -14.45 9.87 -34.44 -0.34 -14.79 16 7 H 0.08 2.43 8.06 -52.49 -0.42 2.00 16 8 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 9 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 10 Si 0.88 21.53 27.47 -169.99 -4.67 16.86 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 14 C -0.01 -0.18 0.46 -155.66 -0.07 -0.26 16 15 C -0.14 -1.62 7.85 37.16 0.29 -1.33 16 16 C -0.14 -1.82 7.60 37.16 0.28 -1.54 16 17 C -0.05 -0.81 4.64 -104.62 -0.49 -1.30 16 18 C -0.12 -1.74 8.77 -39.58 -0.35 -2.08 16 19 C -0.13 -1.80 10.05 -39.58 -0.40 -2.19 16 20 C -0.13 -1.89 10.05 -39.58 -0.40 -2.29 16 21 C -0.12 -1.99 10.05 -39.58 -0.40 -2.38 16 22 C -0.09 -1.48 8.52 -39.58 -0.34 -1.82 16 23 H 0.06 0.77 6.34 -51.93 -0.33 0.44 16 24 H 0.05 0.87 7.35 -51.93 -0.38 0.48 16 25 H 0.05 0.67 6.68 -51.93 -0.35 0.32 16 26 H 0.34 6.54 7.69 -39.29 -0.30 6.24 16 27 H 0.02 0.56 6.01 -51.93 -0.31 0.25 16 28 H -0.02 -0.49 6.78 -51.93 -0.35 -0.84 16 29 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.05 0.57 7.77 -51.93 -0.40 0.17 16 31 H 0.06 0.63 6.47 -51.93 -0.34 0.29 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.07 1.09 7.12 -51.93 -0.37 0.72 16 34 H 0.05 0.64 6.46 -51.93 -0.34 0.31 16 35 H 0.05 0.58 7.07 -51.92 -0.37 0.21 16 36 H 0.11 1.35 7.11 -52.48 -0.37 0.98 16 37 H 0.11 1.23 8.06 -52.48 -0.42 0.81 16 38 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 39 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 40 H 0.14 2.57 4.01 -52.49 -0.21 2.36 16 LS Contribution 305.45 15.07 4.60 4.60 Total: -1.00 -29.92 305.45 -7.88 -37.80 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -6.04 Total: 6.46 kcal Atomic # 6 Polarization: -23.17 SS G_CDS: -2.09 Total: -25.26 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: 0.31 Total: -40.46 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.92 -7.88 -37.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299615744.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.025 kcal (2) G-P(sol) polarization free energy of solvation -29.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds