Wall clock time and date at job start Thu Apr 9 2020 12:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 C 1.38257 * 119.99832 * 59.72788 * 4 2 1 6 6 C 1.38218 * 119.99931 * 179.79086 * 5 4 2 7 7 C 1.38247 * 119.99859 * 0.43840 * 6 5 4 8 8 C 1.38210 * 120.00197 * 359.81567 * 7 6 5 9 9 C 1.50703 * 120.00214 * 179.97438 * 8 7 6 10 10 N 1.46893 * 109.47185 * 269.97703 * 9 8 7 11 11 C 1.46903 * 111.00145 * 66.04231 * 10 9 8 12 12 C 1.46903 * 111.00228 * 189.99731 * 10 9 8 13 13 C 1.50696 * 109.47207 * 169.99868 * 12 10 9 14 14 H 1.08005 * 120.00364 * 359.97438 * 13 12 10 15 15 C 1.37875 * 120.00257 * 180.02562 * 13 12 10 16 16 N 1.31516 * 120.00324 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 119.99840 * 359.97438 * 15 13 12 18 18 H 1.48509 * 109.46877 * 90.00011 * 17 15 13 19 19 H 1.48494 * 109.47267 * 210.00145 * 17 15 13 20 20 H 1.48497 * 109.47163 * 330.00523 * 17 15 13 21 21 C 1.38207 * 120.00269 * 240.00057 * 4 2 1 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 25 25 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 26 26 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 28 28 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 29 29 H 1.08002 * 119.99958 * 0.02562 * 5 4 2 30 30 H 1.08007 * 119.99653 * 180.27264 * 6 5 4 31 31 H 1.08005 * 120.00188 * 179.83548 * 7 6 5 32 32 H 1.09006 * 109.47039 * 29.97931 * 9 8 7 33 33 H 1.08998 * 109.47577 * 149.97343 * 9 8 7 34 34 H 1.09000 * 109.46623 * 60.00261 * 11 10 9 35 35 H 1.09000 * 109.47176 * 179.97438 * 11 10 9 36 36 H 1.08994 * 109.47132 * 300.00371 * 11 10 9 37 37 H 1.09000 * 109.47181 * 289.99941 * 12 10 9 38 38 H 1.09000 * 109.46677 * 49.99712 * 12 10 9 39 39 H 0.97005 * 119.99928 * 179.97438 * 16 15 13 40 40 H 1.07997 * 120.00321 * 359.97438 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 1.6938 -0.2415 -2.4861 6 6 2.1581 -0.8905 -3.6146 7 6 2.9537 -2.0140 -3.4877 8 6 3.2879 -2.4859 -2.2324 9 6 4.1546 -3.7110 -2.0940 10 7 3.3057 -4.9088 -2.0482 11 6 2.6137 -5.1130 -3.3279 12 6 4.0888 -6.0953 -1.6781 13 6 3.1564 -7.2465 -1.4019 14 1 2.0887 -7.1104 -1.4918 15 6 3.6661 -8.4734 -1.0333 16 7 2.8524 -9.4783 -0.7927 17 14 5.5126 -8.7089 -0.8769 18 1 5.9359 -8.3940 0.5113 19 1 5.8605 -10.1174 -1.1932 20 1 6.2092 -7.8022 -1.8244 21 6 2.8270 -1.8341 -1.1035 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5137 0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.0695 0.6343 -2.5852 30 1 1.8972 -0.5215 -4.5956 31 1 3.3144 -2.5228 -4.3695 32 1 4.8299 -3.7765 -2.9472 33 1 4.7364 -3.6426 -1.1747 34 1 3.3492 -5.2360 -4.1229 35 1 1.9926 -6.0065 -3.2666 36 1 1.9865 -4.2481 -3.5438 37 1 4.7585 -6.3586 -2.4968 38 1 4.6745 -5.8797 -0.7845 39 1 3.2111 -10.3415 -0.5337 40 1 3.0882 -2.2029 -0.1226 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595341568.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:21:09 Heat of formation + Delta-G solvation = 13.114251 kcal Electronic energy + Delta-G solvation = -17667.866673 eV Core-core repulsion = 15060.869913 eV Total energy + Delta-G solvation = -2606.996759 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.60524 -36.87106 -35.10059 -32.56710 -31.17028 -29.81724 -27.74588 -27.21674 -26.63686 -23.77218 -22.92361 -21.71190 -20.26792 -19.18425 -16.84449 -16.44439 -15.60199 -15.06054 -14.75147 -14.30016 -14.21768 -13.68778 -13.63657 -13.52554 -13.15930 -12.53487 -12.40890 -12.19559 -11.98791 -11.96623 -11.76124 -11.28935 -11.21907 -11.03750 -10.94808 -10.70735 -10.54441 -10.47986 -10.22611 -9.86461 -9.28379 -8.58650 -8.55859 -8.41860 -7.34979 -6.04341 -4.01634 1.54611 1.61887 3.28631 3.36024 3.37896 3.92175 4.42437 4.65521 4.77919 4.97226 5.14268 5.15979 5.17798 5.28177 5.31637 5.35995 5.52200 5.60657 5.67787 5.68103 5.73154 5.86781 5.96603 5.99021 6.11597 6.17288 6.18406 6.23618 6.29923 6.32823 6.64896 6.70149 6.77276 6.86852 6.93387 7.00421 7.21850 7.59196 7.90812 8.05230 8.66789 9.04573 9.57217 11.08792 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.030962 B = 0.004696 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.113875 B = 5961.329713 C = 6220.290281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.057 4.057 3 C -0.142 4.142 4 C -0.080 4.080 5 C -0.123 4.123 6 C -0.122 4.122 7 C -0.119 4.119 8 C -0.059 4.059 9 C 0.086 3.914 10 N -0.524 5.524 11 C 0.034 3.966 12 C 0.161 3.839 13 C -0.508 4.508 14 H 0.081 0.919 15 C 0.068 3.932 16 N -0.901 5.901 17 Si 0.875 3.125 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.268 1.268 21 C -0.096 4.096 22 H 0.059 0.941 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.077 0.923 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.032 0.968 33 H 0.076 0.924 34 H 0.010 0.990 35 H 0.079 0.921 36 H 0.052 0.948 37 H -0.011 1.011 38 H 0.024 0.976 39 H 0.263 0.737 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.570 20.327 -2.197 20.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.075 4.075 3 C -0.199 4.199 4 C -0.080 4.080 5 C -0.142 4.142 6 C -0.140 4.140 7 C -0.137 4.137 8 C -0.060 4.060 9 C -0.042 4.042 10 N -0.248 5.248 11 C -0.114 4.114 12 C 0.035 3.965 13 C -0.547 4.547 14 H 0.099 0.901 15 C -0.133 4.133 16 N -0.540 5.540 17 Si 0.702 3.298 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.193 1.193 21 C -0.115 4.115 22 H 0.078 0.922 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.096 0.904 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.132 0.868 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.050 0.950 33 H 0.094 0.906 34 H 0.028 0.972 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.006 0.994 38 H 0.042 0.958 39 H 0.073 0.927 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.919 20.181 -1.776 20.280 hybrid contribution 1.573 -0.499 -0.561 1.743 sum 0.654 19.682 -2.337 19.831 Atomic orbital electron populations 1.21849 0.94446 1.02289 1.01485 1.20110 0.95920 0.95751 0.95747 1.21846 1.01157 0.95349 1.01578 1.19790 0.97872 0.95863 0.94459 1.20835 1.00946 1.00291 0.92083 1.21012 0.98616 0.96189 0.98178 1.21034 0.99134 0.96599 0.96970 1.19882 0.97622 0.95549 0.92905 1.21103 0.93252 0.89072 1.00769 1.61964 1.29706 1.02762 1.30377 1.22311 0.98098 1.01915 0.89082 1.20210 0.93374 0.88301 0.94607 1.21032 0.95201 0.92587 1.45831 0.90111 1.24894 0.97553 0.95864 0.95006 1.69897 1.34558 1.02087 1.47432 0.86871 0.86548 0.77475 0.78916 1.20120 1.21190 1.19315 1.20944 0.97449 0.94553 0.98544 0.92224 0.92665 0.92638 0.90437 0.92630 0.92641 0.92627 0.86761 0.86599 0.86614 0.95031 0.90594 0.97174 0.90237 0.92937 0.99377 0.95825 0.92672 0.86078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.00 37.16 0.33 -1.07 16 2 C -0.06 -0.60 3.09 -91.77 -0.28 -0.89 16 3 C -0.14 -1.26 9.01 37.16 0.33 -0.93 16 4 C -0.08 -1.03 4.78 -104.63 -0.50 -1.53 16 5 C -0.12 -1.49 8.71 -39.58 -0.34 -1.84 16 6 C -0.12 -1.52 10.05 -39.59 -0.40 -1.92 16 7 C -0.12 -1.68 7.97 -39.59 -0.32 -2.00 16 8 C -0.06 -0.93 4.88 -104.62 -0.51 -1.44 16 9 C 0.09 1.52 5.12 -4.98 -0.03 1.50 16 10 N -0.52 -11.29 4.74 -245.83 -1.17 -12.45 16 11 C 0.03 0.69 8.96 60.07 0.54 1.22 16 12 C 0.16 3.97 3.79 -4.98 -0.02 3.95 16 13 C -0.51 -14.62 9.01 -34.44 -0.31 -14.93 16 14 H 0.08 2.54 7.37 -52.48 -0.39 2.15 16 15 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 16 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 17 Si 0.87 21.60 27.47 -169.99 -4.67 16.93 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 21 C -0.10 -1.43 9.33 -39.59 -0.37 -1.80 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 23 H 0.05 0.51 7.37 -51.93 -0.38 0.12 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.08 0.83 7.88 -51.93 -0.41 0.42 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.47 7.40 -51.93 -0.38 0.08 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.11 1.15 7.10 -52.49 -0.37 0.77 16 30 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 31 H 0.12 1.54 8.04 -52.48 -0.42 1.12 16 32 H 0.03 0.54 8.07 -51.93 -0.42 0.12 16 33 H 0.08 1.30 7.87 -51.93 -0.41 0.89 16 34 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 35 H 0.08 1.76 6.76 -51.93 -0.35 1.41 16 36 H 0.05 0.94 6.17 -51.93 -0.32 0.62 16 37 H -0.01 -0.28 7.18 -51.93 -0.37 -0.66 16 38 H 0.02 0.58 7.36 -51.93 -0.38 0.20 16 39 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 40 H 0.12 1.77 7.95 -52.49 -0.42 1.35 16 LS Contribution 319.69 15.07 4.82 4.82 Total: -1.00 -30.70 319.69 -8.94 -39.64 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -6.73 Total: -2.16 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: -1.97 Total: -19.78 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: -0.39 Total: -39.45 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.70 -8.94 -39.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595341568.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.758 kcal (2) G-P(sol) polarization free energy of solvation -30.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds