Wall clock time and date at job start Thu Apr 9 2020 12:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 C 1.38257 * 119.99832 * 59.72788 * 4 2 1 6 6 C 1.38218 * 119.99931 * 179.79086 * 5 4 2 7 7 C 1.38247 * 119.99859 * 0.43840 * 6 5 4 8 8 C 1.38210 * 120.00197 * 359.81567 * 7 6 5 9 9 C 1.50703 * 120.00214 * 179.97438 * 8 7 6 10 10 N 1.46893 * 109.47185 * 269.97703 * 9 8 7 11 11 C 1.46903 * 111.00145 * 66.04231 * 10 9 8 12 12 C 1.46903 * 111.00228 * 189.99731 * 10 9 8 13 13 C 1.50696 * 109.47207 * 169.99868 * 12 10 9 14 14 H 1.08005 * 120.00364 * 359.97438 * 13 12 10 15 15 C 1.37875 * 120.00257 * 180.02562 * 13 12 10 16 16 N 1.31516 * 120.00324 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 119.99840 * 359.97438 * 15 13 12 18 18 H 1.48509 * 109.46877 * 90.00011 * 17 15 13 19 19 H 1.48494 * 109.47267 * 210.00145 * 17 15 13 20 20 H 1.48497 * 109.47163 * 330.00523 * 17 15 13 21 21 C 1.38207 * 120.00269 * 240.00057 * 4 2 1 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 25 25 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 26 26 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 28 28 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 29 29 H 1.08002 * 119.99958 * 0.02562 * 5 4 2 30 30 H 1.08007 * 119.99653 * 180.27264 * 6 5 4 31 31 H 1.08005 * 120.00188 * 179.83548 * 7 6 5 32 32 H 1.09006 * 109.47039 * 29.97931 * 9 8 7 33 33 H 1.08998 * 109.47577 * 149.97343 * 9 8 7 34 34 H 1.09000 * 109.46623 * 60.00261 * 11 10 9 35 35 H 1.09000 * 109.47176 * 179.97438 * 11 10 9 36 36 H 1.08994 * 109.47132 * 300.00371 * 11 10 9 37 37 H 1.09000 * 109.47181 * 289.99941 * 12 10 9 38 38 H 1.09000 * 109.46677 * 49.99712 * 12 10 9 39 39 H 0.97005 * 119.99928 * 179.97438 * 16 15 13 40 40 H 1.07997 * 120.00321 * 359.97438 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 1.6938 -0.2415 -2.4861 6 6 2.1581 -0.8905 -3.6146 7 6 2.9537 -2.0140 -3.4877 8 6 3.2879 -2.4859 -2.2324 9 6 4.1546 -3.7110 -2.0940 10 7 3.3057 -4.9088 -2.0482 11 6 2.6137 -5.1130 -3.3279 12 6 4.0888 -6.0953 -1.6781 13 6 3.1564 -7.2465 -1.4019 14 1 2.0887 -7.1104 -1.4918 15 6 3.6661 -8.4734 -1.0333 16 7 2.8524 -9.4783 -0.7927 17 14 5.5126 -8.7089 -0.8769 18 1 5.9359 -8.3940 0.5113 19 1 5.8605 -10.1174 -1.1932 20 1 6.2092 -7.8022 -1.8244 21 6 2.8270 -1.8341 -1.1035 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5137 0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.0695 0.6343 -2.5852 30 1 1.8972 -0.5215 -4.5956 31 1 3.3144 -2.5228 -4.3695 32 1 4.8299 -3.7765 -2.9472 33 1 4.7364 -3.6426 -1.1747 34 1 3.3492 -5.2360 -4.1229 35 1 1.9926 -6.0065 -3.2666 36 1 1.9865 -4.2481 -3.5438 37 1 4.7585 -6.3586 -2.4968 38 1 4.6745 -5.8797 -0.7845 39 1 3.2111 -10.3415 -0.5337 40 1 3.0882 -2.2029 -0.1226 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595341568.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:21:07 Heat of formation + Delta-G solvation = -4.749528 kcal Electronic energy + Delta-G solvation = -17668.641304 eV Core-core repulsion = 15060.869913 eV Total energy + Delta-G solvation = -2607.771391 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.67220 -38.36188 -36.16017 -34.65313 -32.46244 -30.89903 -29.62527 -28.08523 -27.93861 -25.43716 -23.90418 -22.97513 -21.95913 -20.24328 -18.95921 -17.47966 -16.76577 -16.62392 -16.25363 -15.93583 -15.56689 -14.96191 -14.67272 -14.57485 -14.36125 -14.31566 -13.61799 -13.53551 -13.26341 -13.00937 -12.91306 -12.75288 -12.62545 -12.45983 -12.31930 -11.99027 -11.93476 -11.84884 -11.57127 -11.45117 -11.32649 -10.79352 -9.65302 -9.48653 -9.01734 -8.29205 -6.33073 0.48882 0.57107 1.34340 1.35742 1.46532 2.33677 2.82493 3.03915 3.45541 3.72447 3.88774 4.06696 4.17871 4.28906 4.35036 4.36920 4.45126 4.55194 4.61201 4.63652 4.69402 4.75739 4.84849 4.88099 4.99526 5.01461 5.02561 5.15301 5.15825 5.21242 5.29680 5.37375 5.43405 5.50262 5.63878 5.75681 5.83934 5.96028 6.19720 6.32503 6.62430 6.72831 7.30521 8.87517 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.030962 B = 0.004696 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.113875 B = 5961.329713 C = 6220.290281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.059 4.059 3 C -0.137 4.137 4 C -0.081 4.081 5 C -0.121 4.121 6 C -0.119 4.119 7 C -0.129 4.129 8 C -0.079 4.079 9 C 0.090 3.910 10 N -0.543 5.543 11 C 0.043 3.957 12 C 0.171 3.829 13 C -0.518 4.518 14 H 0.036 0.964 15 C 0.008 3.992 16 N -0.948 5.948 17 Si 0.949 3.051 18 H -0.264 1.264 19 H -0.280 1.280 20 H -0.251 1.251 21 C -0.117 4.117 22 H 0.040 0.960 23 H 0.064 0.936 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.141 0.859 30 H 0.144 0.856 31 H 0.122 0.878 32 H 0.041 0.959 33 H 0.076 0.924 34 H 0.022 0.978 35 H 0.046 0.954 36 H 0.073 0.927 37 H -0.010 1.010 38 H 0.029 0.971 39 H 0.267 0.733 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.417 22.770 -2.779 22.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.077 4.077 3 C -0.194 4.194 4 C -0.081 4.081 5 C -0.139 4.139 6 C -0.137 4.137 7 C -0.147 4.147 8 C -0.080 4.080 9 C -0.037 4.037 10 N -0.267 5.267 11 C -0.105 4.105 12 C 0.044 3.956 13 C -0.556 4.556 14 H 0.054 0.946 15 C -0.189 4.189 16 N -0.589 5.589 17 Si 0.772 3.228 18 H -0.189 1.189 19 H -0.206 1.206 20 H -0.175 1.175 21 C -0.135 4.135 22 H 0.059 0.941 23 H 0.083 0.917 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.159 0.841 30 H 0.162 0.838 31 H 0.140 0.860 32 H 0.059 0.941 33 H 0.095 0.905 34 H 0.040 0.960 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.007 0.993 38 H 0.047 0.953 39 H 0.076 0.924 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.064 22.653 -2.365 22.776 hybrid contribution 1.131 -1.178 -0.384 1.677 sum 1.194 21.475 -2.749 21.683 Atomic orbital electron populations 1.21836 0.93722 1.01474 1.02806 1.20165 0.96450 0.96656 0.94440 1.21811 1.00824 0.94052 1.02761 1.20060 0.96968 0.95146 0.95938 1.21184 1.00443 1.00759 0.91497 1.21356 0.97410 0.95253 0.99708 1.21175 0.99662 0.97463 0.96432 1.19780 0.98765 0.95369 0.94050 1.21100 0.93317 0.88122 1.01206 1.61844 1.30448 1.02951 1.31419 1.22193 0.98091 1.01286 0.88932 1.19970 0.92584 0.88248 0.94782 1.21245 0.93946 0.94607 1.45818 0.94600 1.25851 1.03308 0.95292 0.94427 1.70054 1.37254 1.02841 1.48730 0.85695 0.79553 0.77848 0.79718 1.18884 1.20595 1.17529 1.21027 0.98684 0.95768 0.98050 0.94074 0.91651 0.91061 0.91206 0.93141 0.91726 0.91198 0.84115 0.83794 0.85955 0.94087 0.90525 0.95991 0.93524 0.90857 0.99255 0.95271 0.92369 0.86971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.00 71.98 0.65 -1.85 16 2 C -0.06 -1.14 3.09 -11.54 -0.04 -1.18 16 3 C -0.14 -2.08 9.01 71.98 0.65 -1.43 16 4 C -0.08 -1.96 4.78 -19.87 -0.09 -2.06 16 5 C -0.12 -2.58 8.71 22.27 0.19 -2.38 16 6 C -0.12 -2.63 10.05 22.27 0.22 -2.41 16 7 C -0.13 -3.41 7.97 22.27 0.18 -3.24 16 8 C -0.08 -2.44 4.88 -19.87 -0.10 -2.53 16 9 C 0.09 3.12 5.12 85.56 0.44 3.56 16 10 N -0.54 -23.51 4.74 -931.66 -4.42 -27.93 16 11 C 0.04 1.74 8.96 127.69 1.14 2.88 16 12 C 0.17 8.44 3.79 85.55 0.32 8.77 16 13 C -0.52 -30.74 9.01 25.60 0.23 -30.51 16 14 H 0.04 2.38 7.37 -2.91 -0.02 2.36 16 15 C 0.01 0.50 5.47 84.65 0.46 0.96 16 16 N -0.95 -60.11 13.96 21.45 0.30 -59.81 16 17 Si 0.95 44.49 27.47 68.60 1.88 46.37 16 18 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 19 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 20 H -0.25 -11.03 6.54 99.48 0.65 -10.38 16 21 C -0.12 -3.43 9.33 22.27 0.21 -3.22 16 22 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 23 H 0.06 1.01 7.37 -2.39 -0.02 1.00 16 24 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 25 H 0.07 1.45 7.88 -2.39 -0.02 1.43 16 26 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.06 0.86 7.40 -2.39 -0.02 0.85 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.14 2.24 7.10 -2.91 -0.02 2.22 16 30 H 0.14 2.34 8.06 -2.91 -0.02 2.31 16 31 H 0.12 3.01 8.04 -2.91 -0.02 2.99 16 32 H 0.04 1.34 8.07 -2.38 -0.02 1.32 16 33 H 0.08 2.59 7.87 -2.39 -0.02 2.57 16 34 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.05 2.15 6.76 -2.39 -0.02 2.14 16 36 H 0.07 2.60 6.17 -2.39 -0.01 2.59 16 37 H -0.01 -0.50 7.18 -2.39 -0.02 -0.51 16 38 H 0.03 1.40 7.36 -2.39 -0.02 1.39 16 39 H 0.27 15.74 8.31 -92.70 -0.77 14.97 16 40 H 0.11 3.37 7.95 -2.91 -0.02 3.35 16 Total: -1.00 -67.53 319.69 3.16 -64.36 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 0.93 Total: 11.64 kcal Atomic # 6 Polarization: -39.11 SS G_CDS: 4.47 Total: -34.63 kcal Atomic # 7 Polarization: -83.62 SS G_CDS: -4.12 Total: -87.74 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.88 Total: 46.37 kcal Total: -67.53 3.16 -64.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595341568.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.615 kcal (2) G-P(sol) polarization free energy of solvation -67.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds