Wall clock time and date at job start Thu Apr 9 2020 12:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46860 * 2 1 4 4 H 1.09005 * 109.46848 * 178.30428 * 3 2 1 5 5 N 1.46899 * 109.47112 * 58.30724 * 3 2 1 6 6 C 1.46902 * 111.00201 * 81.64353 * 5 3 2 7 7 C 1.50698 * 109.47017 * 176.44595 * 6 5 3 8 8 H 1.07994 * 120.00400 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99774 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00169 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99767 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47123 * 90.00038 * 11 9 7 13 13 H 1.48503 * 109.46658 * 209.99656 * 11 9 7 14 14 H 1.48500 * 109.47250 * 329.99935 * 11 9 7 15 15 C 1.50701 * 109.47206 * 298.30307 * 3 2 1 16 16 C 1.38251 * 119.99744 * 100.00483 * 15 3 2 17 17 C 1.38215 * 119.99915 * 180.25596 * 16 15 3 18 18 C 1.50707 * 119.99918 * 179.71725 * 17 16 15 19 19 C 1.38256 * 120.00109 * 359.53078 * 17 16 15 20 20 C 1.38209 * 119.99741 * 0.40038 * 19 17 16 21 21 C 1.38207 * 120.00074 * 279.97568 * 15 3 2 22 22 C 1.50698 * 120.00266 * 359.97438 * 21 15 3 23 23 H 1.08999 * 109.46948 * 185.61204 * 1 2 3 24 24 H 1.09003 * 109.47231 * 305.60935 * 1 2 3 25 25 H 1.09000 * 109.47341 * 65.61123 * 1 2 3 26 26 H 1.09002 * 109.46928 * 240.00538 * 2 1 3 27 27 H 1.08995 * 109.47518 * 120.00422 * 2 1 3 28 28 H 1.00899 * 110.99706 * 205.59371 * 5 3 2 29 29 H 1.08997 * 109.46791 * 296.44772 * 6 5 3 30 30 H 1.09001 * 109.47123 * 56.44509 * 6 5 3 31 31 H 0.96997 * 120.00123 * 180.02562 * 10 9 7 32 32 H 1.07999 * 120.00246 * 359.97438 * 16 15 3 33 33 H 1.09004 * 109.46669 * 90.00081 * 18 17 16 34 34 H 1.08996 * 109.46862 * 209.99812 * 18 17 16 35 35 H 1.08997 * 109.47257 * 330.00176 * 18 17 16 36 36 H 1.07994 * 120.00301 * 180.23745 * 19 17 16 37 37 H 1.07998 * 120.00380 * 179.83586 * 20 19 17 38 38 H 1.08994 * 109.47346 * 89.99164 * 22 21 15 39 39 H 1.08999 * 109.47465 * 209.99766 * 22 21 15 40 40 H 1.09004 * 109.47005 * 329.99457 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1296 1.4427 0.0304 5 7 1.5171 2.1467 1.1784 6 6 2.3227 1.8488 2.3702 7 6 1.8111 2.6542 3.5366 8 1 0.9717 3.3210 3.4057 9 6 2.4152 2.5405 4.7708 10 7 3.4377 1.7288 4.9301 11 14 1.7814 3.5394 6.2164 12 1 0.7365 2.7649 6.9331 13 1 2.9030 3.8339 7.1442 14 1 1.2010 4.8135 5.7213 15 6 1.5722 2.1407 -1.2510 16 6 0.4753 2.9809 -1.2046 17 6 0.0431 3.6171 -2.3530 18 6 -1.1566 4.5279 -2.3038 19 6 0.7136 3.4209 -3.5461 20 6 1.8111 2.5821 -3.5921 21 6 2.2402 1.9416 -2.4444 22 6 3.4367 1.0267 -2.4946 23 1 -0.3633 -1.0227 0.1005 24 1 -0.3634 0.5984 0.8355 25 1 -0.3634 0.4243 -0.9359 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.4692 3.1410 1.0137 29 1 2.2491 0.7863 2.6021 30 1 3.3641 2.1076 2.1788 31 1 3.8625 1.6486 5.7985 32 1 -0.0467 3.1365 -0.2720 33 1 -0.8320 5.5445 -2.0814 34 1 -1.6649 4.5115 -3.2678 35 1 -1.8403 4.1866 -1.5266 36 1 0.3782 3.9210 -4.4426 37 1 2.3333 2.4267 -4.5245 38 1 3.1089 0.0118 -2.7190 39 1 4.1221 1.3671 -3.2708 40 1 3.9447 1.0396 -1.5303 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599641570.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:21:18 Heat of formation + Delta-G solvation = 2.453918 kcal Electronic energy + Delta-G solvation = -18111.011187 eV Core-core repulsion = 15503.552161 eV Total energy + Delta-G solvation = -2607.459026 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.76118 -36.40277 -33.77175 -32.89879 -31.11591 -30.34296 -29.14523 -26.81667 -24.98686 -24.54513 -22.31445 -21.98921 -20.28875 -18.91366 -16.61020 -15.70988 -15.62296 -14.87702 -14.57124 -14.49991 -14.02377 -13.56049 -13.25260 -13.10952 -12.78781 -12.59218 -12.40205 -12.21224 -12.08900 -11.79279 -11.45870 -11.36985 -11.13360 -10.89693 -10.80205 -10.67035 -10.52481 -10.35391 -10.10392 -9.75790 -9.15916 -8.50442 -8.43027 -8.15155 -7.27830 -6.02862 -4.04559 1.56324 1.66139 3.32377 3.38188 3.41722 3.95428 4.43208 4.95947 4.97435 5.06183 5.21402 5.29405 5.33157 5.33798 5.57010 5.62646 5.66838 5.69301 5.71577 5.85212 5.88490 5.98631 6.02184 6.09215 6.24608 6.33915 6.41888 6.49459 6.51853 6.66585 6.75831 6.85265 6.94752 7.01316 7.29023 7.30624 7.46248 7.79320 8.14309 8.39951 8.62443 9.04836 9.60300 11.08333 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.024278 B = 0.005711 C = 0.005157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.041984 B = 4901.361291 C = 5428.120909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.102 4.102 3 C 0.121 3.879 4 H 0.045 0.955 5 N -0.681 5.681 6 C 0.195 3.805 7 C -0.514 4.514 8 H 0.061 0.939 9 C 0.056 3.944 10 N -0.897 5.897 11 Si 0.898 3.102 12 H -0.280 1.280 13 H -0.287 1.287 14 H -0.274 1.274 15 C -0.065 4.065 16 C -0.100 4.100 17 C -0.097 4.097 18 C -0.111 4.111 19 C -0.129 4.129 20 C -0.122 4.122 21 C -0.092 4.092 22 C -0.117 4.117 23 H 0.036 0.964 24 H 0.076 0.924 25 H 0.042 0.958 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.330 0.670 29 H 0.030 0.970 30 H -0.015 1.015 31 H 0.261 0.739 32 H 0.136 0.864 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.319 0.819 -16.144 16.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.140 4.140 3 C 0.011 3.989 4 H 0.063 0.937 5 N -0.313 5.313 6 C 0.068 3.932 7 C -0.553 4.553 8 H 0.080 0.920 9 C -0.145 4.145 10 N -0.537 5.537 11 Si 0.726 3.274 12 H -0.206 1.206 13 H -0.213 1.213 14 H -0.199 1.199 15 C -0.066 4.066 16 C -0.118 4.118 17 C -0.097 4.097 18 C -0.168 4.168 19 C -0.147 4.147 20 C -0.140 4.140 21 C -0.092 4.092 22 C -0.173 4.173 23 H 0.055 0.945 24 H 0.095 0.905 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.148 0.852 29 H 0.048 0.952 30 H 0.003 0.997 31 H 0.071 0.929 32 H 0.154 0.846 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.655 0.270 -15.850 16.522 hybrid contribution 0.631 0.971 0.637 1.322 sum -4.024 1.242 -15.213 15.785 Atomic orbital electron populations 1.21631 0.95543 1.00240 1.02267 1.21410 0.96980 0.94875 1.00779 1.20464 0.96350 0.94172 0.87932 0.93729 1.60804 1.55147 1.12613 1.02706 1.19586 0.90098 0.97391 0.86122 1.21180 1.15524 1.24616 0.93937 0.92040 1.24976 0.94967 0.95660 0.98897 1.69960 1.22285 1.37429 1.24010 0.86503 0.78316 0.80417 0.82185 1.20628 1.21339 1.19886 1.19950 0.95310 0.96702 0.94597 1.21073 0.96408 0.96045 0.98250 1.19899 0.97540 0.98673 0.93565 1.20754 0.95364 0.98459 1.02239 1.20886 0.96691 0.99873 0.97271 1.20873 0.97500 0.98182 0.97420 1.19712 0.97571 0.98900 0.93050 1.20847 0.95328 0.98293 1.02846 0.94452 0.90530 0.93896 0.93101 0.91644 0.85196 0.95214 0.99700 0.92943 0.84612 0.91463 0.92105 0.91467 0.86816 0.86691 0.91348 0.92112 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.30 37.16 0.35 -1.94 16 2 C -0.10 -1.74 5.66 -26.73 -0.15 -1.89 16 3 C 0.12 2.18 1.96 -68.86 -0.13 2.05 16 4 H 0.05 0.86 6.07 -51.93 -0.31 0.54 16 5 N -0.68 -14.32 4.59 -109.22 -0.50 -14.82 16 6 C 0.19 5.05 5.26 -4.98 -0.03 5.02 16 7 C -0.51 -14.45 9.28 -34.44 -0.32 -14.77 16 8 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 9 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 10 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 11 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 15 C -0.07 -1.05 4.16 -104.63 -0.44 -1.48 16 16 C -0.10 -1.54 7.76 -39.59 -0.31 -1.85 16 17 C -0.10 -1.31 5.88 -104.62 -0.62 -1.92 16 18 C -0.11 -1.21 10.01 36.01 0.36 -0.85 16 19 C -0.13 -1.63 9.70 -39.59 -0.38 -2.02 16 20 C -0.12 -1.57 9.70 -39.58 -0.38 -1.96 16 21 C -0.09 -1.32 5.88 -104.62 -0.61 -1.93 16 22 C -0.12 -1.45 8.92 36.00 0.32 -1.13 16 23 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.08 1.41 7.38 -51.93 -0.38 1.02 16 25 H 0.04 0.67 7.04 -51.93 -0.37 0.30 16 26 H 0.05 0.76 7.08 -51.93 -0.37 0.39 16 27 H 0.06 1.22 7.36 -51.93 -0.38 0.83 16 28 H 0.33 6.85 7.13 -39.29 -0.28 6.57 16 29 H 0.03 0.83 7.35 -51.93 -0.38 0.45 16 30 H -0.01 -0.41 7.98 -51.93 -0.41 -0.83 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.14 2.20 6.77 -52.49 -0.36 1.85 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 35 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 36 H 0.11 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 38 H 0.07 0.78 7.77 -51.93 -0.40 0.38 16 39 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 40 H 0.07 0.96 6.12 -51.93 -0.32 0.64 16 LS Contribution 318.52 15.07 4.80 4.80 Total: -1.00 -29.49 318.52 -8.89 -38.38 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -6.46 Total: 4.19 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: -2.44 Total: -23.16 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 0.23 Total: -40.89 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.49 -8.89 -38.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599641570.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.832 kcal (2) G-P(sol) polarization free energy of solvation -29.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds