Wall clock time and date at job start Thu Apr 9 2020 12:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46860 * 2 1 4 4 H 1.09005 * 109.46848 * 178.30428 * 3 2 1 5 5 N 1.46899 * 109.47112 * 58.30724 * 3 2 1 6 6 C 1.46902 * 111.00201 * 81.64353 * 5 3 2 7 7 C 1.50698 * 109.47017 * 176.44595 * 6 5 3 8 8 H 1.07994 * 120.00400 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99774 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00169 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99767 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47123 * 90.00038 * 11 9 7 13 13 H 1.48503 * 109.46658 * 209.99656 * 11 9 7 14 14 H 1.48500 * 109.47250 * 329.99935 * 11 9 7 15 15 C 1.50701 * 109.47206 * 298.30307 * 3 2 1 16 16 C 1.38251 * 119.99744 * 100.00483 * 15 3 2 17 17 C 1.38215 * 119.99915 * 180.25596 * 16 15 3 18 18 C 1.50707 * 119.99918 * 179.71725 * 17 16 15 19 19 C 1.38256 * 120.00109 * 359.53078 * 17 16 15 20 20 C 1.38209 * 119.99741 * 0.40038 * 19 17 16 21 21 C 1.38207 * 120.00074 * 279.97568 * 15 3 2 22 22 C 1.50698 * 120.00266 * 359.97438 * 21 15 3 23 23 H 1.08999 * 109.46948 * 185.61204 * 1 2 3 24 24 H 1.09003 * 109.47231 * 305.60935 * 1 2 3 25 25 H 1.09000 * 109.47341 * 65.61123 * 1 2 3 26 26 H 1.09002 * 109.46928 * 240.00538 * 2 1 3 27 27 H 1.08995 * 109.47518 * 120.00422 * 2 1 3 28 28 H 1.00899 * 110.99706 * 205.59371 * 5 3 2 29 29 H 1.08997 * 109.46791 * 296.44772 * 6 5 3 30 30 H 1.09001 * 109.47123 * 56.44509 * 6 5 3 31 31 H 0.96997 * 120.00123 * 180.02562 * 10 9 7 32 32 H 1.07999 * 120.00246 * 359.97438 * 16 15 3 33 33 H 1.09004 * 109.46669 * 90.00081 * 18 17 16 34 34 H 1.08996 * 109.46862 * 209.99812 * 18 17 16 35 35 H 1.08997 * 109.47257 * 330.00176 * 18 17 16 36 36 H 1.07994 * 120.00301 * 180.23745 * 19 17 16 37 37 H 1.07998 * 120.00380 * 179.83586 * 20 19 17 38 38 H 1.08994 * 109.47346 * 89.99164 * 22 21 15 39 39 H 1.08999 * 109.47465 * 209.99766 * 22 21 15 40 40 H 1.09004 * 109.47005 * 329.99457 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1296 1.4427 0.0304 5 7 1.5171 2.1467 1.1784 6 6 2.3227 1.8488 2.3702 7 6 1.8111 2.6542 3.5366 8 1 0.9717 3.3210 3.4057 9 6 2.4152 2.5405 4.7708 10 7 3.4377 1.7288 4.9301 11 14 1.7814 3.5394 6.2164 12 1 0.7365 2.7649 6.9331 13 1 2.9030 3.8339 7.1442 14 1 1.2010 4.8135 5.7213 15 6 1.5722 2.1407 -1.2510 16 6 0.4753 2.9809 -1.2046 17 6 0.0431 3.6171 -2.3530 18 6 -1.1566 4.5279 -2.3038 19 6 0.7136 3.4209 -3.5461 20 6 1.8111 2.5821 -3.5921 21 6 2.2402 1.9416 -2.4444 22 6 3.4367 1.0267 -2.4946 23 1 -0.3633 -1.0227 0.1005 24 1 -0.3634 0.5984 0.8355 25 1 -0.3634 0.4243 -0.9359 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.4692 3.1410 1.0137 29 1 2.2491 0.7863 2.6021 30 1 3.3641 2.1076 2.1788 31 1 3.8625 1.6486 5.7985 32 1 -0.0467 3.1365 -0.2720 33 1 -0.8320 5.5445 -2.0814 34 1 -1.6649 4.5115 -3.2678 35 1 -1.8403 4.1866 -1.5266 36 1 0.3782 3.9210 -4.4426 37 1 2.3333 2.4267 -4.5245 38 1 3.1089 0.0118 -2.7190 39 1 4.1221 1.3671 -3.2708 40 1 3.9447 1.0396 -1.5303 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599641570.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:21:18 Heat of formation + Delta-G solvation = -13.331232 kcal Electronic energy + Delta-G solvation = -18111.695683 eV Core-core repulsion = 15503.552161 eV Total energy + Delta-G solvation = -2608.143522 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.92562 -37.87258 -35.30467 -34.48473 -32.86302 -31.55111 -30.10588 -28.66091 -26.53164 -25.57905 -24.13332 -23.25957 -21.60483 -20.29490 -18.60599 -17.08762 -16.97188 -16.49587 -16.07443 -15.88340 -15.19322 -14.89843 -14.60690 -14.38327 -14.03576 -13.96014 -13.91556 -13.59135 -13.45420 -13.17476 -12.76714 -12.70502 -12.62392 -12.40668 -12.32751 -12.13946 -12.00134 -11.77531 -11.73724 -11.33852 -11.16344 -10.66036 -9.57953 -9.22960 -9.08717 -8.22938 -6.33780 0.49269 0.57170 1.40275 1.42152 1.53166 2.39322 2.87779 3.10698 3.53058 3.77049 3.99497 4.09155 4.18714 4.25851 4.34017 4.42627 4.48406 4.69170 4.70878 4.79199 4.85955 4.87989 4.91667 4.99107 5.02951 5.06581 5.16700 5.18168 5.27237 5.30201 5.36321 5.43261 5.56501 5.61163 5.63935 5.79124 5.83971 6.04229 6.22585 6.46251 6.71806 6.88869 7.37056 8.88926 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.024278 B = 0.005711 C = 0.005157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.041984 B = 4901.361291 C = 5428.120909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.100 4.100 3 C 0.124 3.876 4 H 0.028 0.972 5 N -0.672 5.672 6 C 0.213 3.787 7 C -0.534 4.534 8 H 0.064 0.936 9 C 0.002 3.998 10 N -0.934 5.934 11 Si 0.972 3.028 12 H -0.273 1.273 13 H -0.282 1.282 14 H -0.263 1.263 15 C -0.084 4.084 16 C -0.117 4.117 17 C -0.101 4.101 18 C -0.110 4.110 19 C -0.126 4.126 20 C -0.120 4.120 21 C -0.102 4.102 22 C -0.116 4.116 23 H 0.052 0.948 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.075 0.925 27 H 0.039 0.961 28 H 0.332 0.668 29 H 0.003 0.997 30 H -0.045 1.045 31 H 0.265 0.735 32 H 0.119 0.881 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.145 0.855 37 H 0.144 0.856 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.371 1.804 -17.992 18.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.138 4.138 3 C 0.014 3.986 4 H 0.046 0.954 5 N -0.303 5.303 6 C 0.085 3.915 7 C -0.573 4.573 8 H 0.082 0.918 9 C -0.196 4.196 10 N -0.574 5.574 11 Si 0.797 3.203 12 H -0.198 1.198 13 H -0.207 1.207 14 H -0.188 1.188 15 C -0.084 4.084 16 C -0.135 4.135 17 C -0.101 4.101 18 C -0.167 4.167 19 C -0.143 4.143 20 C -0.138 4.138 21 C -0.102 4.102 22 C -0.172 4.172 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.093 0.907 27 H 0.058 0.942 28 H 0.150 0.850 29 H 0.021 0.979 30 H -0.028 1.028 31 H 0.073 0.927 32 H 0.137 0.863 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.162 0.838 37 H 0.162 0.838 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.719 1.256 -17.720 18.662 hybrid contribution 0.970 0.654 1.108 1.612 sum -4.749 1.910 -16.612 17.382 Atomic orbital electron populations 1.21515 0.94769 1.00775 1.01606 1.21397 0.97578 0.94178 1.00657 1.20440 0.95386 0.94819 0.87964 0.95401 1.60691 1.54055 1.12940 1.02646 1.19191 0.88962 0.95393 0.87942 1.21535 1.15773 1.25002 0.94960 0.91773 1.25939 0.94999 0.96692 1.01995 1.70094 1.23506 1.38847 1.24953 0.85341 0.77841 0.78989 0.78168 1.19829 1.20735 1.18758 1.19758 0.96560 0.97969 0.94135 1.21022 0.96709 0.97149 0.98636 1.20194 0.98307 0.98468 0.93168 1.20795 0.94393 0.98078 1.03411 1.21283 0.96023 0.99175 0.97869 1.21226 0.97472 0.97214 0.97851 1.19938 0.97931 0.99461 0.92910 1.20864 0.95018 0.98746 1.02576 0.92866 0.93067 0.92953 0.90686 0.94176 0.85040 0.97927 1.02789 0.92657 0.86296 0.90790 0.89923 0.91834 0.83757 0.83792 0.90225 0.89938 0.92944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.26 9.30 71.98 0.67 -3.59 16 2 C -0.10 -3.49 5.66 30.59 0.17 -3.32 16 3 C 0.12 4.66 1.96 44.17 0.09 4.74 16 4 H 0.03 1.15 6.07 -2.38 -0.01 1.13 16 5 N -0.67 -29.76 4.59 -499.45 -2.29 -32.05 16 6 C 0.21 11.68 5.26 85.56 0.45 12.13 16 7 C -0.53 -30.95 9.28 25.60 0.24 -30.72 16 8 H 0.06 3.60 7.81 -2.91 -0.02 3.58 16 9 C 0.00 0.11 5.46 84.66 0.46 0.57 16 10 N -0.93 -57.24 13.29 21.45 0.28 -56.95 16 11 Si 0.97 44.84 29.54 68.60 2.03 46.87 16 12 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 13 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 14 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 15 C -0.08 -2.69 4.16 -19.87 -0.08 -2.77 16 16 C -0.12 -3.60 7.76 22.27 0.17 -3.43 16 17 C -0.10 -2.54 5.88 -19.86 -0.12 -2.66 16 18 C -0.11 -2.14 10.01 71.24 0.71 -1.43 16 19 C -0.13 -2.75 9.70 22.27 0.22 -2.54 16 20 C -0.12 -2.71 9.70 22.27 0.22 -2.49 16 21 C -0.10 -2.77 5.88 -19.87 -0.12 -2.89 16 22 C -0.12 -2.72 8.92 71.24 0.64 -2.08 16 23 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.05 1.93 7.38 -2.39 -0.02 1.92 16 25 H 0.05 1.61 7.04 -2.39 -0.02 1.59 16 26 H 0.07 2.23 7.08 -2.39 -0.02 2.21 16 27 H 0.04 1.57 7.36 -2.39 -0.02 1.56 16 28 H 0.33 14.44 7.13 -89.69 -0.64 13.80 16 29 H 0.00 0.16 7.35 -2.39 -0.02 0.14 16 30 H -0.05 -2.72 7.98 -2.39 -0.02 -2.74 16 31 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 32 H 0.12 3.98 6.77 -2.91 -0.02 3.96 16 33 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.08 1.24 8.09 -2.39 -0.02 1.22 16 35 H 0.06 1.27 8.09 -2.39 -0.02 1.25 16 36 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 37 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 38 H 0.08 1.67 7.77 -2.39 -0.02 1.65 16 39 H 0.08 1.55 8.09 -2.39 -0.02 1.53 16 40 H 0.05 1.42 6.12 -2.38 -0.01 1.41 16 Total: -1.00 -64.95 318.52 4.11 -60.84 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: 0.37 Total: 21.75 kcal Atomic # 6 Polarization: -44.18 SS G_CDS: 3.72 Total: -40.46 kcal Atomic # 7 Polarization: -87.00 SS G_CDS: -2.01 Total: -89.01 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -64.95 4.11 -60.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599641570.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.512 kcal (2) G-P(sol) polarization free energy of solvation -64.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds