Wall clock time and date at job start Thu Apr 9 2020 12:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46495 * 109.47502 * 2 1 4 4 C 1.36933 * 120.00253 * 269.60273 * 3 2 1 5 5 H 1.07990 * 120.00542 * 325.47831 * 4 3 2 6 6 C 1.38814 * 119.99741 * 145.47734 * 4 3 2 7 7 N 1.31615 * 120.00230 * 337.22757 * 6 4 3 8 8 Si 1.86804 * 120.00052 * 157.22752 * 6 4 3 9 9 H 1.48504 * 109.46775 * 60.00163 * 8 6 4 10 10 H 1.48495 * 109.47212 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47078 * 300.00413 * 8 6 4 12 12 C 1.46499 * 119.99595 * 89.60419 * 3 2 1 13 13 C 1.53005 * 109.47228 * 90.00124 * 12 3 2 14 14 H 1.08997 * 109.46983 * 304.99723 * 13 12 3 15 15 C 1.52996 * 109.47113 * 65.00053 * 13 12 3 16 16 C 1.50702 * 109.46993 * 185.00237 * 13 12 3 17 17 C 1.38243 * 119.99763 * 299.72284 * 16 13 12 18 18 C 1.38233 * 119.99883 * 179.79505 * 17 16 13 19 19 C 1.38231 * 119.99941 * 0.43583 * 18 17 16 20 20 C 1.50701 * 120.00274 * 179.84108 * 19 18 17 21 21 C 1.38233 * 120.00057 * 359.81832 * 19 18 17 22 22 C 1.38229 * 120.00258 * 120.00391 * 16 13 12 23 23 H 1.09006 * 109.47201 * 59.99252 * 1 2 3 24 24 H 1.08996 * 109.47467 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46577 * 299.99819 * 1 2 3 26 26 H 1.09005 * 109.46577 * 240.00181 * 2 1 3 27 27 H 1.08998 * 109.47481 * 120.00903 * 2 1 3 28 28 H 0.97006 * 120.00435 * 179.97438 * 7 6 4 29 29 H 1.09003 * 109.46963 * 210.00224 * 12 3 2 30 30 H 1.09001 * 109.47428 * 329.99946 * 12 3 2 31 31 H 1.08997 * 109.47466 * 59.99966 * 15 13 12 32 32 H 1.08992 * 109.47227 * 180.02562 * 15 13 12 33 33 H 1.09001 * 109.46834 * 299.99989 * 15 13 12 34 34 H 1.08000 * 119.99664 * 0.02562 * 17 16 13 35 35 H 1.07998 * 120.00184 * 180.27900 * 18 17 16 36 36 H 1.09007 * 109.46641 * 269.97904 * 20 19 18 37 37 H 1.08999 * 109.47325 * 29.97538 * 20 19 18 38 38 H 1.08994 * 109.47629 * 149.98215 * 20 19 18 39 39 H 1.08004 * 120.00280 * 179.97438 * 21 19 18 40 40 H 1.08002 * 119.99631 * 359.96938 * 22 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2544 2.0239 -1.1858 5 1 2.6272 1.4708 -2.0351 6 6 2.0145 3.3867 -1.2963 7 7 1.1726 3.9755 -0.4736 8 14 2.8865 4.3850 -2.6126 9 1 2.5368 3.8493 -3.9528 10 1 2.4603 5.8045 -2.5209 11 1 4.3549 4.2944 -2.4110 12 6 2.2543 2.0746 1.2687 13 6 3.6964 1.8351 1.7204 14 1 3.8888 0.7633 1.7686 15 6 4.6578 2.4814 0.7211 16 6 3.9038 2.4444 3.0831 17 6 3.7220 3.8023 3.2679 18 6 3.9080 4.3605 4.5188 19 6 4.2846 3.5624 5.5827 20 6 4.4909 4.1715 6.9457 21 6 4.4715 2.2055 5.3967 22 6 4.2813 1.6465 4.1468 23 1 -0.3634 0.5140 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8932 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.0052 4.9279 -0.5505 29 1 2.0882 3.1435 1.1349 30 1 1.5685 1.6922 2.0248 31 1 4.4655 3.5532 0.6728 32 1 5.6851 2.3105 1.0425 33 1 4.5078 2.0407 -0.2645 34 1 3.4310 4.4263 2.4359 35 1 3.7617 5.4206 4.6642 36 1 5.5297 4.4853 7.0498 37 1 3.8370 5.0361 7.0601 38 1 4.2556 3.4339 7.7128 39 1 4.7661 1.5819 6.2279 40 1 4.4273 0.5863 4.0014 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600116107.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:21:23 Heat of formation + Delta-G solvation = 23.563002 kcal Electronic energy + Delta-G solvation = -18332.678079 eV Core-core repulsion = 15726.134412 eV Total energy + Delta-G solvation = -2606.543668 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.19030 -36.48861 -33.90930 -31.77191 -30.89265 -30.45655 -28.45676 -26.23939 -25.70007 -23.34960 -22.45305 -21.61400 -20.28709 -18.98914 -16.62952 -15.78662 -14.98853 -14.72017 -14.62733 -13.88872 -13.79358 -13.62003 -13.06080 -12.97350 -12.70814 -12.34985 -12.20246 -12.03856 -11.74792 -11.32206 -11.10926 -11.07388 -10.93588 -10.68050 -10.63756 -10.35398 -10.15655 -10.07924 -9.78947 -9.68079 -9.47090 -8.51289 -8.43751 -8.01350 -6.53948 -5.73644 -3.26827 1.77361 1.81793 3.37926 3.44310 3.46805 4.17658 4.51449 5.10467 5.12103 5.28845 5.38487 5.42994 5.51213 5.65660 5.74838 5.89233 5.95690 6.00179 6.09230 6.16461 6.28163 6.32238 6.45930 6.48563 6.55482 6.59734 6.70004 6.83769 6.90159 6.93958 7.00784 7.01568 7.04524 7.22687 7.31151 7.41655 7.48197 7.80138 7.87433 8.54934 9.23502 9.87751 10.45157 11.25784 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.022248 B = 0.006940 C = 0.005941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.243074 B = 4033.559498 C = 4711.906721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 N -0.584 5.584 4 C -0.251 4.251 5 H 0.060 0.940 6 C 0.013 3.987 7 N -0.886 5.886 8 Si 0.886 3.114 9 H -0.282 1.282 10 H -0.291 1.291 11 H -0.281 1.281 12 C 0.154 3.846 13 C -0.073 4.073 14 H 0.056 0.944 15 C -0.124 4.124 16 C -0.057 4.057 17 C -0.106 4.106 18 C -0.120 4.120 19 C -0.109 4.109 20 C -0.108 4.108 21 C -0.124 4.124 22 C -0.123 4.123 23 H 0.053 0.947 24 H 0.028 0.972 25 H 0.042 0.958 26 H 0.041 0.959 27 H 0.031 0.969 28 H 0.254 0.746 29 H 0.103 0.897 30 H 0.019 0.981 31 H 0.046 0.954 32 H 0.024 0.976 33 H 0.078 0.922 34 H 0.125 0.875 35 H 0.115 0.885 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.113 0.887 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.474 -1.874 10.150 11.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.015 3.985 3 N -0.304 5.304 4 C -0.380 4.380 5 H 0.077 0.923 6 C -0.187 4.187 7 N -0.529 5.529 8 Si 0.715 3.285 9 H -0.208 1.208 10 H -0.217 1.217 11 H -0.207 1.207 12 C 0.027 3.973 13 C -0.094 4.094 14 H 0.075 0.925 15 C -0.181 4.181 16 C -0.058 4.058 17 C -0.124 4.124 18 C -0.139 4.139 19 C -0.110 4.110 20 C -0.165 4.165 21 C -0.142 4.142 22 C -0.141 4.141 23 H 0.073 0.927 24 H 0.048 0.952 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.064 0.936 29 H 0.121 0.879 30 H 0.038 0.962 31 H 0.065 0.935 32 H 0.044 0.956 33 H 0.097 0.903 34 H 0.143 0.857 35 H 0.133 0.867 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.131 0.869 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.394 -1.711 10.135 11.607 hybrid contribution 0.332 0.601 -0.630 0.932 sum 5.726 -1.110 9.505 11.151 Atomic orbital electron populations 1.22280 0.99870 0.98223 1.01821 1.20863 0.91879 0.87798 0.97969 1.43870 1.74330 1.09842 1.02325 1.18942 1.36937 0.91361 0.90794 0.92267 1.25010 0.97277 0.98594 0.97812 1.69978 1.32813 1.10410 1.39677 0.86630 0.80290 0.79442 0.82099 1.20849 1.21685 1.20729 1.21024 0.88826 1.01935 0.85503 1.20901 1.00895 0.98027 0.89573 0.92506 1.21677 0.95509 1.00562 1.00382 1.20221 0.95940 0.93593 0.96071 1.21138 0.99062 0.95154 0.97041 1.20982 1.00859 0.99187 0.92825 1.19766 1.01681 0.93964 0.95541 1.20713 1.01574 1.00534 0.93662 1.20884 1.01889 0.94399 0.97023 1.21049 1.00979 0.99433 0.92681 0.92736 0.95249 0.93919 0.94099 0.95078 0.93633 0.87910 0.96232 0.93500 0.95640 0.90284 0.85677 0.86727 0.91830 0.91961 0.92081 0.86933 0.86683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.30 10.24 37.16 0.38 -2.92 16 2 C 0.14 2.99 6.39 -4.04 -0.03 2.97 16 3 N -0.58 -14.14 2.32 -173.24 -0.40 -14.55 16 4 C -0.25 -6.58 7.42 -15.06 -0.11 -6.69 16 5 H 0.06 1.57 7.93 -52.49 -0.42 1.15 16 6 C 0.01 0.35 4.95 -17.43 -0.09 0.26 16 7 N -0.89 -24.77 11.34 55.49 0.63 -24.14 16 8 Si 0.89 21.12 29.61 -169.99 -5.03 16.09 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.15 3.56 4.54 -4.04 -0.02 3.54 16 13 C -0.07 -1.46 2.77 -91.77 -0.25 -1.71 16 14 H 0.06 1.11 7.88 -51.93 -0.41 0.70 16 15 C -0.12 -2.54 8.56 37.16 0.32 -2.23 16 16 C -0.06 -1.05 4.78 -104.62 -0.50 -1.55 16 17 C -0.11 -1.90 8.76 -39.58 -0.35 -2.25 16 18 C -0.12 -1.88 9.70 -39.59 -0.38 -2.26 16 19 C -0.11 -1.56 5.88 -104.63 -0.62 -2.17 16 20 C -0.11 -1.16 10.01 36.01 0.36 -0.80 16 21 C -0.12 -1.79 9.70 -39.58 -0.38 -2.17 16 22 C -0.12 -1.98 9.67 -39.59 -0.38 -2.37 16 23 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 24 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.04 0.84 8.04 -51.93 -0.42 0.43 16 27 H 0.03 0.60 8.08 -51.93 -0.42 0.19 16 28 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.10 2.66 4.79 -51.93 -0.25 2.41 16 30 H 0.02 0.45 8.07 -51.93 -0.42 0.03 16 31 H 0.05 1.00 7.37 -51.93 -0.38 0.62 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 1.76 6.35 -51.93 -0.33 1.44 16 34 H 0.13 2.39 7.16 -52.49 -0.38 2.02 16 35 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 36 H 0.06 0.62 8.14 -51.92 -0.42 0.19 16 37 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 38 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 39 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 40 H 0.12 1.67 7.95 -52.49 -0.42 1.26 16 LS Contribution 322.88 15.07 4.87 4.87 Total: -1.00 -27.69 322.88 -8.76 -36.45 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -6.77 Total: 1.63 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: -2.05 Total: -20.35 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.23 Total: -38.69 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -27.69 -8.76 -36.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600116107.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.015 kcal (2) G-P(sol) polarization free energy of solvation -27.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds