Wall clock time and date at job start Thu Apr 9 2020 12:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46495 * 109.47502 * 2 1 4 4 C 1.36933 * 120.00253 * 269.60273 * 3 2 1 5 5 H 1.07990 * 120.00542 * 325.47831 * 4 3 2 6 6 C 1.38814 * 119.99741 * 145.47734 * 4 3 2 7 7 N 1.31615 * 120.00230 * 337.22757 * 6 4 3 8 8 Si 1.86804 * 120.00052 * 157.22752 * 6 4 3 9 9 H 1.48504 * 109.46775 * 60.00163 * 8 6 4 10 10 H 1.48495 * 109.47212 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47078 * 300.00413 * 8 6 4 12 12 C 1.46499 * 119.99595 * 89.60419 * 3 2 1 13 13 C 1.53005 * 109.47228 * 90.00124 * 12 3 2 14 14 H 1.08997 * 109.46983 * 304.99723 * 13 12 3 15 15 C 1.52996 * 109.47113 * 65.00053 * 13 12 3 16 16 C 1.50702 * 109.46993 * 185.00237 * 13 12 3 17 17 C 1.38243 * 119.99763 * 299.72284 * 16 13 12 18 18 C 1.38233 * 119.99883 * 179.79505 * 17 16 13 19 19 C 1.38231 * 119.99941 * 0.43583 * 18 17 16 20 20 C 1.50701 * 120.00274 * 179.84108 * 19 18 17 21 21 C 1.38233 * 120.00057 * 359.81832 * 19 18 17 22 22 C 1.38229 * 120.00258 * 120.00391 * 16 13 12 23 23 H 1.09006 * 109.47201 * 59.99252 * 1 2 3 24 24 H 1.08996 * 109.47467 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46577 * 299.99819 * 1 2 3 26 26 H 1.09005 * 109.46577 * 240.00181 * 2 1 3 27 27 H 1.08998 * 109.47481 * 120.00903 * 2 1 3 28 28 H 0.97006 * 120.00435 * 179.97438 * 7 6 4 29 29 H 1.09003 * 109.46963 * 210.00224 * 12 3 2 30 30 H 1.09001 * 109.47428 * 329.99946 * 12 3 2 31 31 H 1.08997 * 109.47466 * 59.99966 * 15 13 12 32 32 H 1.08992 * 109.47227 * 180.02562 * 15 13 12 33 33 H 1.09001 * 109.46834 * 299.99989 * 15 13 12 34 34 H 1.08000 * 119.99664 * 0.02562 * 17 16 13 35 35 H 1.07998 * 120.00184 * 180.27900 * 18 17 16 36 36 H 1.09007 * 109.46641 * 269.97904 * 20 19 18 37 37 H 1.08999 * 109.47325 * 29.97538 * 20 19 18 38 38 H 1.08994 * 109.47629 * 149.98215 * 20 19 18 39 39 H 1.08004 * 120.00280 * 179.97438 * 21 19 18 40 40 H 1.08002 * 119.99631 * 359.96938 * 22 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2544 2.0239 -1.1858 5 1 2.6272 1.4708 -2.0351 6 6 2.0145 3.3867 -1.2963 7 7 1.1726 3.9755 -0.4736 8 14 2.8865 4.3850 -2.6126 9 1 2.5368 3.8493 -3.9528 10 1 2.4603 5.8045 -2.5209 11 1 4.3549 4.2944 -2.4110 12 6 2.2543 2.0746 1.2687 13 6 3.6964 1.8351 1.7204 14 1 3.8888 0.7633 1.7686 15 6 4.6578 2.4814 0.7211 16 6 3.9038 2.4444 3.0831 17 6 3.7220 3.8023 3.2679 18 6 3.9080 4.3605 4.5188 19 6 4.2846 3.5624 5.5827 20 6 4.4909 4.1715 6.9457 21 6 4.4715 2.2055 5.3967 22 6 4.2813 1.6465 4.1468 23 1 -0.3634 0.5140 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8932 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.0052 4.9279 -0.5505 29 1 2.0882 3.1435 1.1349 30 1 1.5685 1.6922 2.0248 31 1 4.4655 3.5532 0.6728 32 1 5.6851 2.3105 1.0425 33 1 4.5078 2.0407 -0.2645 34 1 3.4310 4.4263 2.4359 35 1 3.7617 5.4206 4.6642 36 1 5.5297 4.4853 7.0498 37 1 3.8370 5.0361 7.0601 38 1 4.2556 3.4339 7.7128 39 1 4.7661 1.5819 6.2279 40 1 4.4273 0.5863 4.0014 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600116107.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:21:22 Heat of formation + Delta-G solvation = 11.607917 kcal Electronic energy + Delta-G solvation = -18333.196491 eV Core-core repulsion = 15726.134412 eV Total energy + Delta-G solvation = -2607.062079 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.48052 -38.20958 -35.39795 -33.73109 -32.20245 -31.70061 -30.21849 -27.84340 -27.18306 -25.19321 -23.74956 -23.01629 -21.89280 -20.56374 -18.55814 -17.16622 -16.69539 -16.27304 -15.97373 -15.60771 -15.47413 -14.75659 -14.46175 -14.40014 -14.09549 -14.04794 -13.78950 -13.29737 -13.03682 -12.97444 -12.83513 -12.61969 -12.53389 -12.44047 -12.20562 -12.00416 -11.91528 -11.67640 -11.53936 -11.36505 -11.22718 -10.44897 -9.74420 -9.28786 -8.51518 -7.75920 -5.32505 0.53706 0.58192 1.44989 1.48443 1.53185 2.53644 2.93135 3.30214 3.68331 3.97799 4.08361 4.23180 4.25631 4.32196 4.45832 4.59974 4.60463 4.69281 4.71851 4.81978 4.89013 4.89642 4.92068 5.01879 5.06619 5.19484 5.22137 5.29810 5.30308 5.31912 5.40834 5.54532 5.56821 5.70911 5.71430 5.77183 5.88602 6.01655 6.24099 6.51843 7.22609 7.93615 8.45582 9.19829 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.022248 B = 0.006940 C = 0.005941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.243074 B = 4033.559498 C = 4711.906721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.135 3.865 3 N -0.598 5.598 4 C -0.249 4.249 5 H 0.055 0.945 6 C -0.028 4.028 7 N -0.915 5.915 8 Si 0.936 3.064 9 H -0.278 1.278 10 H -0.296 1.296 11 H -0.277 1.277 12 C 0.160 3.840 13 C -0.059 4.059 14 H 0.064 0.936 15 C -0.114 4.114 16 C -0.082 4.082 17 C -0.126 4.126 18 C -0.129 4.129 19 C -0.104 4.104 20 C -0.107 4.107 21 C -0.122 4.122 22 C -0.126 4.126 23 H 0.027 0.973 24 H 0.066 0.934 25 H 0.028 0.972 26 H 0.047 0.953 27 H 0.052 0.948 28 H 0.248 0.752 29 H 0.074 0.926 30 H 0.010 0.990 31 H 0.026 0.974 32 H 0.046 0.954 33 H 0.057 0.943 34 H 0.098 0.902 35 H 0.130 0.870 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.146 0.854 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.688 -2.893 12.118 14.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.010 3.990 3 N -0.319 5.319 4 C -0.380 4.380 5 H 0.073 0.927 6 C -0.225 4.225 7 N -0.559 5.559 8 Si 0.764 3.236 9 H -0.203 1.203 10 H -0.223 1.223 11 H -0.203 1.203 12 C 0.034 3.966 13 C -0.080 4.080 14 H 0.082 0.918 15 C -0.172 4.172 16 C -0.083 4.083 17 C -0.144 4.144 18 C -0.147 4.147 19 C -0.104 4.104 20 C -0.163 4.163 21 C -0.140 4.140 22 C -0.144 4.144 23 H 0.046 0.954 24 H 0.085 0.915 25 H 0.047 0.953 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.092 0.908 30 H 0.028 0.972 31 H 0.046 0.954 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.116 0.884 35 H 0.148 0.852 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.164 0.836 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.617 -2.750 12.102 14.065 hybrid contribution -0.044 0.874 -1.153 1.448 sum 6.574 -1.876 10.949 12.908 Atomic orbital electron populations 1.22139 0.99213 0.99984 0.99710 1.21022 0.92369 0.86379 0.99230 1.44091 1.74922 1.10855 1.02037 1.19079 1.35927 0.91629 0.91331 0.92711 1.25526 0.97990 0.99391 0.99602 1.70105 1.34356 1.10081 1.41400 0.85831 0.79465 0.77896 0.80360 1.20336 1.22254 1.20320 1.20850 0.90791 1.00017 0.84925 1.20617 0.98276 0.98393 0.90711 0.91807 1.21543 0.96976 0.99087 0.99552 1.20077 0.98497 0.93924 0.95761 1.21048 1.00661 0.95175 0.97536 1.21204 1.00818 1.00344 0.92318 1.20228 0.99478 0.94014 0.96708 1.20786 1.02737 1.01168 0.91633 1.21282 1.00579 0.94884 0.97207 1.21254 1.00384 1.00051 0.92715 0.95424 0.91484 0.95325 0.93501 0.93008 0.94257 0.90810 0.97192 0.95436 0.93512 0.92397 0.88393 0.85203 0.90320 0.91187 0.90290 0.83593 0.85109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.05 10.24 71.98 0.74 -5.31 16 2 C 0.14 5.65 6.39 86.38 0.55 6.20 16 3 N -0.60 -29.42 2.32 -702.01 -1.63 -31.05 16 4 C -0.25 -13.34 7.42 84.03 0.62 -12.71 16 5 H 0.06 2.94 7.93 -2.92 -0.02 2.92 16 6 C -0.03 -1.53 4.95 84.86 0.42 -1.11 16 7 N -0.91 -53.10 11.34 21.65 0.25 -52.85 16 8 Si 0.94 44.40 29.61 68.60 2.03 46.43 16 9 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 10 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 12 C 0.16 7.64 4.54 86.38 0.39 8.03 16 13 C -0.06 -2.39 2.77 -11.54 -0.03 -2.42 16 14 H 0.06 2.44 7.88 -2.39 -0.02 2.43 16 15 C -0.11 -4.76 8.56 71.98 0.62 -4.14 16 16 C -0.08 -2.97 4.78 -19.86 -0.09 -3.06 16 17 C -0.13 -4.62 8.76 22.27 0.20 -4.42 16 18 C -0.13 -3.89 9.70 22.27 0.22 -3.67 16 19 C -0.10 -2.67 5.88 -19.87 -0.12 -2.78 16 20 C -0.11 -1.86 10.01 71.24 0.71 -1.15 16 21 C -0.12 -3.10 9.70 22.27 0.22 -2.88 16 22 C -0.13 -3.79 9.67 22.27 0.22 -3.57 16 23 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 24 H 0.07 2.15 8.14 -2.39 -0.02 2.14 16 25 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 26 H 0.05 1.89 8.04 -2.38 -0.02 1.87 16 27 H 0.05 1.94 8.08 -2.39 -0.02 1.92 16 28 H 0.25 14.11 8.31 -92.70 -0.77 13.34 16 29 H 0.07 4.02 4.79 -2.39 -0.01 4.01 16 30 H 0.01 0.47 8.07 -2.39 -0.02 0.45 16 31 H 0.03 1.21 7.37 -2.39 -0.02 1.19 16 32 H 0.05 1.69 8.14 -2.39 -0.02 1.68 16 33 H 0.06 2.62 6.35 -2.39 -0.02 2.60 16 34 H 0.10 4.03 7.16 -2.91 -0.02 4.01 16 35 H 0.13 3.39 8.06 -2.91 -0.02 3.37 16 36 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.07 1.14 8.09 -2.39 -0.02 1.12 16 38 H 0.08 1.13 8.08 -2.39 -0.02 1.11 16 39 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 40 H 0.13 3.44 7.95 -2.91 -0.02 3.42 16 Total: -1.00 -60.74 322.88 6.28 -54.46 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 0.98 Total: 16.03 kcal Atomic # 6 Polarization: -37.67 SS G_CDS: 4.65 Total: -33.01 kcal Atomic # 7 Polarization: -82.52 SS G_CDS: -1.39 Total: -83.90 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -60.74 6.28 -54.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600116107.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.066 kcal (2) G-P(sol) polarization free energy of solvation -60.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds