Wall clock time and date at job start Thu Apr 9 2020 12:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46492 * 109.47082 * 2 1 4 4 C 1.36938 * 120.00286 * 275.23835 * 3 2 1 5 5 H 1.07993 * 119.99908 * 37.70356 * 4 3 2 6 6 C 1.38812 * 119.99961 * 217.70836 * 4 3 2 7 7 N 1.31620 * 120.00284 * 21.65344 * 6 4 3 8 8 Si 1.86801 * 119.99726 * 201.65877 * 6 4 3 9 9 H 1.48509 * 109.47067 * 89.99708 * 8 6 4 10 10 H 1.48498 * 109.47324 * 209.99635 * 8 6 4 11 11 H 1.48496 * 109.47203 * 330.00045 * 8 6 4 12 12 C 1.46506 * 119.99701 * 95.24339 * 3 2 1 13 13 C 1.53004 * 109.46996 * 269.99419 * 12 3 2 14 14 H 1.09003 * 109.46691 * 55.00313 * 13 12 3 15 15 C 1.53001 * 109.46983 * 295.00348 * 13 12 3 16 16 C 1.50695 * 109.46859 * 175.00110 * 13 12 3 17 17 C 1.38236 * 120.00102 * 59.73201 * 16 13 12 18 18 C 1.38239 * 119.99763 * 179.76565 * 17 16 13 19 19 C 1.38232 * 120.00040 * 0.49905 * 18 17 16 20 20 C 1.50700 * 119.99695 * 179.72622 * 19 18 17 21 21 C 1.38236 * 119.99835 * 359.75372 * 19 18 17 22 22 C 1.38232 * 119.99836 * 239.99671 * 16 13 12 23 23 H 1.08998 * 109.47196 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46841 * 299.99569 * 1 2 3 25 25 H 1.08997 * 109.46997 * 59.99697 * 1 2 3 26 26 H 1.09002 * 109.46774 * 239.99887 * 2 1 3 27 27 H 1.09004 * 109.46835 * 120.00673 * 2 1 3 28 28 H 0.97000 * 119.99623 * 179.97438 * 7 6 4 29 29 H 1.09005 * 109.46986 * 149.99844 * 12 3 2 30 30 H 1.08996 * 109.47376 * 30.00001 * 12 3 2 31 31 H 1.08996 * 109.47018 * 299.99666 * 15 13 12 32 32 H 1.08996 * 109.47345 * 60.00130 * 15 13 12 33 33 H 1.09003 * 109.46641 * 179.97438 * 15 13 12 34 34 H 1.07995 * 119.99885 * 359.97438 * 17 16 13 35 35 H 1.08000 * 119.99325 * 180.23111 * 18 17 16 36 36 H 1.09005 * 109.47065 * 270.02076 * 20 19 18 37 37 H 1.09000 * 109.47383 * 30.02772 * 20 19 18 38 38 H 1.09007 * 109.46756 * 150.02631 * 20 19 18 39 39 H 1.08002 * 119.99455 * 179.97438 * 21 19 18 40 40 H 1.07998 * 120.00503 * 0.02562 * 22 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1445 2.0628 -1.1809 5 1 1.4118 1.9286 -1.9628 6 6 3.2142 2.9263 -1.3730 7 7 4.3072 2.7907 -0.6523 8 14 3.1026 4.2810 -2.6544 9 1 2.5453 5.5079 -2.0303 10 1 4.4575 4.5693 -3.1893 11 1 2.2160 3.8427 -3.7621 12 6 2.3718 2.0331 1.2635 13 6 1.1405 2.7390 1.8351 14 1 0.3228 2.0243 1.9286 15 6 0.7218 3.8732 0.8975 16 6 1.4708 3.3049 3.1921 17 6 2.4858 4.2338 3.3253 18 6 2.7855 4.7565 4.5694 19 6 2.0771 4.3426 5.6819 20 6 2.4080 4.9079 7.0391 21 6 1.0655 3.4098 5.5495 22 6 0.7623 2.8910 4.3046 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5140 0.8900 28 1 5.0548 3.3939 -0.7868 29 1 3.1605 2.7644 1.0868 30 1 2.7233 1.2840 1.9730 31 1 1.5395 4.5878 0.8040 32 1 0.4830 3.4639 -0.0840 33 1 -0.1556 4.3758 1.3045 34 1 3.0424 4.5536 2.4568 35 1 3.5761 5.4850 4.6728 36 1 3.1663 4.2870 7.5163 37 1 2.7877 5.9235 6.9270 38 1 1.5092 4.9220 7.6558 39 1 0.5123 3.0862 6.4188 40 1 -0.0276 2.1618 4.2014 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600116110.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:21:26 Heat of formation + Delta-G solvation = 23.020338 kcal Electronic energy + Delta-G solvation = -18389.602130 eV Core-core repulsion = 15783.034931 eV Total energy + Delta-G solvation = -2606.567199 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.19931 -36.52923 -33.86674 -31.82974 -30.86518 -30.44543 -28.58681 -26.26321 -25.68416 -23.41404 -22.42931 -21.53388 -20.28175 -19.13990 -16.65112 -15.74086 -14.99384 -14.85275 -14.59471 -13.85485 -13.73564 -13.56159 -13.17082 -13.05336 -12.70910 -12.42059 -12.09993 -12.02770 -11.69658 -11.41736 -11.28584 -11.08619 -10.98935 -10.73404 -10.62856 -10.41927 -10.21790 -10.15503 -9.86468 -9.55434 -9.40958 -8.51766 -8.41973 -8.01681 -6.49859 -5.74370 -3.32182 1.76949 1.81274 3.36629 3.44758 3.45730 4.17268 4.50080 5.10055 5.11453 5.27182 5.37977 5.43675 5.50356 5.66189 5.72879 5.88593 5.93484 5.96221 6.07775 6.11507 6.25913 6.30561 6.41720 6.43500 6.46430 6.58871 6.68937 6.83764 6.89014 6.93318 6.93564 7.00678 7.03153 7.16549 7.25553 7.41087 7.47559 7.77432 7.86178 8.56391 9.24031 9.86585 10.46152 11.24486 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.022353 B = 0.007086 C = 0.005936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.335075 B = 3950.422075 C = 4716.104787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.140 3.860 3 N -0.583 5.583 4 C -0.253 4.253 5 H 0.058 0.942 6 C 0.016 3.984 7 N -0.886 5.886 8 Si 0.887 3.113 9 H -0.285 1.285 10 H -0.292 1.292 11 H -0.277 1.277 12 C 0.158 3.842 13 C -0.075 4.075 14 H 0.060 0.940 15 C -0.125 4.125 16 C -0.058 4.058 17 C -0.106 4.106 18 C -0.121 4.121 19 C -0.109 4.109 20 C -0.108 4.108 21 C -0.124 4.124 22 C -0.123 4.123 23 H 0.034 0.966 24 H 0.044 0.956 25 H 0.048 0.952 26 H 0.042 0.958 27 H 0.032 0.968 28 H 0.254 0.746 29 H 0.097 0.903 30 H 0.020 0.980 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.025 0.975 34 H 0.125 0.875 35 H 0.115 0.885 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.113 0.887 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.064 1.894 10.701 11.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.014 3.986 3 N -0.303 5.303 4 C -0.382 4.382 5 H 0.076 0.924 6 C -0.184 4.184 7 N -0.528 5.528 8 Si 0.716 3.284 9 H -0.211 1.211 10 H -0.218 1.218 11 H -0.203 1.203 12 C 0.031 3.969 13 C -0.096 4.096 14 H 0.079 0.921 15 C -0.182 4.182 16 C -0.059 4.059 17 C -0.124 4.124 18 C -0.139 4.139 19 C -0.109 4.109 20 C -0.165 4.165 21 C -0.142 4.142 22 C -0.141 4.141 23 H 0.053 0.947 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.114 0.886 30 H 0.039 0.961 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.044 0.956 34 H 0.143 0.857 35 H 0.133 0.867 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.131 0.869 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.875 1.953 10.665 11.888 hybrid contribution -0.056 0.767 -0.599 0.974 sum -4.931 2.720 10.066 11.534 Atomic orbital electron populations 1.22376 1.00188 0.98825 1.01161 1.20840 0.91660 0.87503 0.98623 1.43766 1.75913 1.08083 1.02533 1.18914 1.04341 1.20996 0.93986 0.92412 1.25116 0.94237 1.01250 0.97822 1.70017 1.03038 1.37236 1.42514 0.86544 0.76962 0.83116 0.81769 1.21131 1.21807 1.20251 1.20980 0.94154 0.96377 0.85370 1.20990 1.01397 0.97414 0.89769 0.92150 1.21676 0.98848 0.97153 1.00501 1.20242 0.94553 0.95153 0.95948 1.21134 0.97252 0.96740 0.97312 1.20984 0.99759 1.00617 0.92498 1.19766 0.97374 0.98529 0.95272 1.20715 1.01458 1.00460 0.93851 1.20886 0.98190 0.98015 0.97097 1.21047 1.00214 1.00501 0.92358 0.94715 0.93744 0.93261 0.93929 0.94961 0.93641 0.88574 0.96139 0.93523 0.90314 0.95624 0.85719 0.86729 0.91723 0.92014 0.92124 0.86931 0.86697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.03 10.21 37.16 0.38 -2.65 16 2 C 0.14 2.98 6.44 -4.05 -0.03 2.95 16 3 N -0.58 -14.15 2.31 -173.24 -0.40 -14.55 16 4 C -0.25 -6.65 7.39 -15.06 -0.11 -6.76 16 5 H 0.06 1.54 7.92 -52.49 -0.42 1.13 16 6 C 0.02 0.43 4.95 -17.43 -0.09 0.35 16 7 N -0.89 -24.94 11.50 55.49 0.64 -24.30 16 8 Si 0.89 21.17 29.61 -169.99 -5.03 16.14 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 C 0.16 3.65 4.57 -4.04 -0.02 3.63 16 13 C -0.07 -1.49 2.77 -91.77 -0.25 -1.74 16 14 H 0.06 1.18 6.21 -51.93 -0.32 0.86 16 15 C -0.12 -2.55 8.56 37.16 0.32 -2.23 16 16 C -0.06 -1.06 4.78 -104.63 -0.50 -1.56 16 17 C -0.11 -1.91 8.76 -39.58 -0.35 -2.25 16 18 C -0.12 -1.87 9.70 -39.58 -0.38 -2.26 16 19 C -0.11 -1.55 5.88 -104.62 -0.62 -2.17 16 20 C -0.11 -1.16 10.01 36.01 0.36 -0.80 16 21 C -0.12 -1.78 9.70 -39.58 -0.38 -2.17 16 22 C -0.12 -1.98 9.67 -39.58 -0.38 -2.36 16 23 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.04 0.80 6.47 -51.93 -0.34 0.46 16 25 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.04 0.93 8.08 -51.93 -0.42 0.51 16 27 H 0.03 0.65 7.83 -51.93 -0.41 0.25 16 28 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.10 2.49 4.95 -51.93 -0.26 2.23 16 30 H 0.02 0.47 7.86 -51.93 -0.41 0.06 16 31 H 0.05 1.00 7.41 -51.93 -0.38 0.61 16 32 H 0.08 1.75 6.35 -51.93 -0.33 1.42 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.12 2.38 7.16 -52.49 -0.38 2.00 16 35 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 38 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 39 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.11 1.68 7.95 -52.49 -0.42 1.26 16 LS Contribution 319.48 15.07 4.81 4.81 Total: -1.00 -27.83 319.48 -8.62 -36.44 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -6.58 Total: 1.47 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: -2.05 Total: -20.02 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.24 Total: -38.85 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.83 -8.62 -36.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600116110.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.463 kcal (2) G-P(sol) polarization free energy of solvation -27.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds