Wall clock time and date at job start Thu Apr 9 2020 12:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46492 * 109.47082 * 2 1 4 4 C 1.36938 * 120.00286 * 275.23835 * 3 2 1 5 5 H 1.07993 * 119.99908 * 37.70356 * 4 3 2 6 6 C 1.38812 * 119.99961 * 217.70836 * 4 3 2 7 7 N 1.31620 * 120.00284 * 21.65344 * 6 4 3 8 8 Si 1.86801 * 119.99726 * 201.65877 * 6 4 3 9 9 H 1.48509 * 109.47067 * 89.99708 * 8 6 4 10 10 H 1.48498 * 109.47324 * 209.99635 * 8 6 4 11 11 H 1.48496 * 109.47203 * 330.00045 * 8 6 4 12 12 C 1.46506 * 119.99701 * 95.24339 * 3 2 1 13 13 C 1.53004 * 109.46996 * 269.99419 * 12 3 2 14 14 H 1.09003 * 109.46691 * 55.00313 * 13 12 3 15 15 C 1.53001 * 109.46983 * 295.00348 * 13 12 3 16 16 C 1.50695 * 109.46859 * 175.00110 * 13 12 3 17 17 C 1.38236 * 120.00102 * 59.73201 * 16 13 12 18 18 C 1.38239 * 119.99763 * 179.76565 * 17 16 13 19 19 C 1.38232 * 120.00040 * 0.49905 * 18 17 16 20 20 C 1.50700 * 119.99695 * 179.72622 * 19 18 17 21 21 C 1.38236 * 119.99835 * 359.75372 * 19 18 17 22 22 C 1.38232 * 119.99836 * 239.99671 * 16 13 12 23 23 H 1.08998 * 109.47196 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46841 * 299.99569 * 1 2 3 25 25 H 1.08997 * 109.46997 * 59.99697 * 1 2 3 26 26 H 1.09002 * 109.46774 * 239.99887 * 2 1 3 27 27 H 1.09004 * 109.46835 * 120.00673 * 2 1 3 28 28 H 0.97000 * 119.99623 * 179.97438 * 7 6 4 29 29 H 1.09005 * 109.46986 * 149.99844 * 12 3 2 30 30 H 1.08996 * 109.47376 * 30.00001 * 12 3 2 31 31 H 1.08996 * 109.47018 * 299.99666 * 15 13 12 32 32 H 1.08996 * 109.47345 * 60.00130 * 15 13 12 33 33 H 1.09003 * 109.46641 * 179.97438 * 15 13 12 34 34 H 1.07995 * 119.99885 * 359.97438 * 17 16 13 35 35 H 1.08000 * 119.99325 * 180.23111 * 18 17 16 36 36 H 1.09005 * 109.47065 * 270.02076 * 20 19 18 37 37 H 1.09000 * 109.47383 * 30.02772 * 20 19 18 38 38 H 1.09007 * 109.46756 * 150.02631 * 20 19 18 39 39 H 1.08002 * 119.99455 * 179.97438 * 21 19 18 40 40 H 1.07998 * 120.00503 * 0.02562 * 22 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1445 2.0628 -1.1809 5 1 1.4118 1.9286 -1.9628 6 6 3.2142 2.9263 -1.3730 7 7 4.3072 2.7907 -0.6523 8 14 3.1026 4.2810 -2.6544 9 1 2.5453 5.5079 -2.0303 10 1 4.4575 4.5693 -3.1893 11 1 2.2160 3.8427 -3.7621 12 6 2.3718 2.0331 1.2635 13 6 1.1405 2.7390 1.8351 14 1 0.3228 2.0243 1.9286 15 6 0.7218 3.8732 0.8975 16 6 1.4708 3.3049 3.1921 17 6 2.4858 4.2338 3.3253 18 6 2.7855 4.7565 4.5694 19 6 2.0771 4.3426 5.6819 20 6 2.4080 4.9079 7.0391 21 6 1.0655 3.4098 5.5495 22 6 0.7623 2.8910 4.3046 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5140 0.8900 28 1 5.0548 3.3939 -0.7868 29 1 3.1605 2.7644 1.0868 30 1 2.7233 1.2840 1.9730 31 1 1.5395 4.5878 0.8040 32 1 0.4830 3.4639 -0.0840 33 1 -0.1556 4.3758 1.3045 34 1 3.0424 4.5536 2.4568 35 1 3.5761 5.4850 4.6728 36 1 3.1663 4.2870 7.5163 37 1 2.7877 5.9235 6.9270 38 1 1.5092 4.9220 7.6558 39 1 0.5123 3.0862 6.4188 40 1 -0.0276 2.1618 4.2014 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600116110.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:21:25 Heat of formation + Delta-G solvation = 10.809358 kcal Electronic energy + Delta-G solvation = -18390.131638 eV Core-core repulsion = 15783.034931 eV Total energy + Delta-G solvation = -2607.096707 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.49077 -38.24074 -35.34999 -33.77549 -32.15849 -31.69054 -30.30692 -27.85933 -27.18436 -25.20134 -23.70399 -22.91353 -21.97409 -20.65364 -18.57340 -17.18238 -16.72263 -16.29826 -15.87886 -15.62382 -15.45233 -14.77600 -14.54967 -14.34808 -14.12120 -14.06903 -13.53408 -13.33718 -13.07768 -12.98909 -12.90753 -12.70548 -12.56380 -12.47256 -12.26002 -12.00842 -11.91146 -11.72634 -11.61001 -11.25906 -11.12905 -10.44305 -9.74811 -9.28835 -8.48514 -7.76709 -5.39075 0.53349 0.57771 1.43498 1.47186 1.53094 2.51669 2.92806 3.27763 3.68902 3.96976 4.07900 4.22506 4.24831 4.30457 4.47040 4.59418 4.60088 4.68435 4.69872 4.84540 4.87040 4.89617 4.91496 5.03645 5.08684 5.17977 5.21588 5.27606 5.30562 5.35103 5.40829 5.53693 5.60518 5.69765 5.71507 5.76826 5.84550 5.99919 6.23754 6.51893 7.22439 7.91780 8.45849 9.17786 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.022353 B = 0.007086 C = 0.005936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.335075 B = 3950.422075 C = 4716.104787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.134 3.866 3 N -0.599 5.599 4 C -0.249 4.249 5 H 0.052 0.948 6 C -0.027 4.027 7 N -0.917 5.917 8 Si 0.938 3.062 9 H -0.284 1.284 10 H -0.296 1.296 11 H -0.269 1.269 12 C 0.165 3.835 13 C -0.059 4.059 14 H 0.067 0.933 15 C -0.115 4.115 16 C -0.083 4.083 17 C -0.126 4.126 18 C -0.129 4.129 19 C -0.104 4.104 20 C -0.107 4.107 21 C -0.122 4.122 22 C -0.126 4.126 23 H 0.065 0.935 24 H 0.047 0.953 25 H 0.037 0.963 26 H 0.031 0.969 27 H 0.040 0.960 28 H 0.249 0.751 29 H 0.066 0.934 30 H 0.011 0.989 31 H 0.025 0.975 32 H 0.057 0.943 33 H 0.046 0.954 34 H 0.097 0.903 35 H 0.130 0.870 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.146 0.854 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.628 1.956 12.802 14.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.009 3.991 3 N -0.320 5.320 4 C -0.380 4.380 5 H 0.070 0.930 6 C -0.224 4.224 7 N -0.561 5.561 8 Si 0.767 3.233 9 H -0.211 1.211 10 H -0.223 1.223 11 H -0.194 1.194 12 C 0.038 3.962 13 C -0.080 4.080 14 H 0.086 0.914 15 C -0.172 4.172 16 C -0.084 4.084 17 C -0.145 4.145 18 C -0.147 4.147 19 C -0.104 4.104 20 C -0.163 4.163 21 C -0.139 4.139 22 C -0.144 4.144 23 H 0.084 0.916 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.084 0.916 30 H 0.029 0.971 31 H 0.045 0.955 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.116 0.884 35 H 0.148 0.852 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.164 0.836 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.463 2.004 12.768 14.450 hybrid contribution 0.434 0.704 -1.161 1.426 sum -6.029 2.708 11.607 13.357 Atomic orbital electron populations 1.22171 0.97387 1.00709 1.00719 1.20981 0.93763 0.85922 0.98462 1.43991 1.76288 1.09372 1.02315 1.19023 1.03616 1.20879 0.94447 0.93003 1.25660 0.94053 1.03037 0.99668 1.70134 1.03632 1.38045 1.44284 0.85721 0.76596 0.80910 0.80097 1.21121 1.22262 1.19370 1.20808 0.94986 0.95463 0.84906 1.20682 0.99662 0.96920 0.90737 0.91435 1.21544 0.98893 0.97020 0.99755 1.20101 0.96047 0.96534 0.95674 1.21046 0.97815 0.97951 0.97665 1.21208 1.00488 1.00915 0.92066 1.20229 0.96217 0.97546 0.96422 1.20788 1.02789 1.00958 0.91792 1.21284 0.98012 0.97206 0.97436 1.21249 1.00185 1.00630 0.92309 0.91621 0.93377 0.94422 0.95070 0.94146 0.94157 0.91591 0.97058 0.95534 0.92383 0.93477 0.88448 0.85192 0.90547 0.91057 0.90181 0.83587 0.85136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.26 10.21 71.98 0.73 -4.53 16 2 C 0.13 5.68 6.44 86.38 0.56 6.23 16 3 N -0.60 -29.61 2.31 -701.99 -1.62 -31.23 16 4 C -0.25 -13.40 7.39 84.03 0.62 -12.78 16 5 H 0.05 2.82 7.92 -2.91 -0.02 2.79 16 6 C -0.03 -1.47 4.95 84.86 0.42 -1.05 16 7 N -0.92 -53.58 11.50 21.65 0.25 -53.33 16 8 Si 0.94 44.57 29.61 68.60 2.03 46.60 16 9 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 10 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 11 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 12 C 0.16 7.85 4.57 86.38 0.40 8.25 16 13 C -0.06 -2.38 2.77 -11.54 -0.03 -2.42 16 14 H 0.07 2.58 6.21 -2.39 -0.01 2.57 16 15 C -0.11 -4.77 8.56 71.98 0.62 -4.15 16 16 C -0.08 -3.00 4.78 -19.87 -0.09 -3.09 16 17 C -0.13 -4.63 8.76 22.27 0.20 -4.44 16 18 C -0.13 -3.88 9.70 22.27 0.22 -3.66 16 19 C -0.10 -2.66 5.88 -19.87 -0.12 -2.77 16 20 C -0.11 -1.86 10.01 71.24 0.71 -1.14 16 21 C -0.12 -3.09 9.70 22.27 0.22 -2.87 16 22 C -0.13 -3.77 9.67 22.27 0.22 -3.56 16 23 H 0.06 1.88 8.14 -2.39 -0.02 1.87 16 24 H 0.05 1.63 6.47 -2.39 -0.02 1.62 16 25 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.03 1.36 8.08 -2.39 -0.02 1.34 16 27 H 0.04 1.62 7.83 -2.39 -0.02 1.60 16 28 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 29 H 0.07 3.60 4.95 -2.38 -0.01 3.59 16 30 H 0.01 0.53 7.86 -2.39 -0.02 0.51 16 31 H 0.03 1.16 7.41 -2.39 -0.02 1.15 16 32 H 0.06 2.62 6.35 -2.39 -0.02 2.60 16 33 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.10 4.01 7.16 -2.91 -0.02 3.99 16 35 H 0.13 3.38 8.06 -2.91 -0.02 3.36 16 36 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.07 1.13 8.09 -2.39 -0.02 1.11 16 38 H 0.08 1.12 8.09 -2.38 -0.02 1.10 16 39 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 40 H 0.13 3.44 7.95 -2.91 -0.02 3.41 16 Total: -1.00 -61.04 319.48 6.30 -54.73 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.99 Total: 15.22 kcal Atomic # 6 Polarization: -36.65 SS G_CDS: 4.66 Total: -32.00 kcal Atomic # 7 Polarization: -83.18 SS G_CDS: -1.37 Total: -84.56 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -61.04 6.30 -54.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600116110.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.543 kcal (2) G-P(sol) polarization free energy of solvation -61.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds