Wall clock time and date at job start Thu Apr 9 2020 12:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38245 * 119.99600 * 2 1 4 4 C 1.38234 * 119.99665 * 180.02562 * 3 2 1 5 5 C 1.38235 * 120.00258 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00173 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.46862 * 359.97438 * 6 5 4 8 8 C 1.52996 * 109.47395 * 119.99965 * 6 5 4 9 9 C 1.53006 * 109.46914 * 239.99981 * 6 5 4 10 10 N 1.46902 * 109.46626 * 174.99764 * 9 6 5 11 11 C 1.46905 * 110.99800 * 180.02562 * 10 9 6 12 12 C 1.53000 * 109.47234 * 180.02562 * 11 10 9 13 13 C 1.50695 * 109.46861 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00407 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99561 * 180.02562 * 13 12 11 16 16 N 1.31523 * 119.99588 * 180.02562 * 15 13 12 17 17 Si 1.86791 * 120.00190 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47002 * 90.00074 * 17 15 13 19 19 H 1.48498 * 109.47207 * 210.00013 * 17 15 13 20 20 H 1.48502 * 109.47525 * 330.00268 * 17 15 13 21 21 C 1.38236 * 119.99721 * 0.25453 * 5 4 3 22 22 C 1.38233 * 120.00377 * 359.49344 * 21 5 4 23 23 H 1.09002 * 109.46978 * 90.00157 * 1 2 3 24 24 H 1.09005 * 109.47182 * 210.00267 * 1 2 3 25 25 H 1.08999 * 109.47696 * 330.00099 * 1 2 3 26 26 H 1.07990 * 119.99643 * 359.97438 * 3 2 1 27 27 H 1.07993 * 119.99785 * 179.97438 * 4 3 2 28 28 H 1.08997 * 109.47474 * 179.97438 * 8 6 5 29 29 H 1.09002 * 109.46922 * 300.00535 * 8 6 5 30 30 H 1.09006 * 109.46822 * 59.99823 * 8 6 5 31 31 H 1.08993 * 109.46955 * 295.00111 * 9 6 5 32 32 H 1.09000 * 109.47050 * 54.99940 * 9 6 5 33 33 H 1.00898 * 110.99915 * 56.05185 * 10 9 6 34 34 H 1.09002 * 109.47091 * 300.00139 * 11 10 9 35 35 H 1.09001 * 109.46854 * 60.00166 * 11 10 9 36 36 H 1.08997 * 109.46649 * 299.99858 * 12 11 10 37 37 H 1.09001 * 109.47170 * 60.00230 * 12 11 10 38 38 H 0.96997 * 119.99375 * 179.97438 * 16 15 13 39 39 H 1.08006 * 120.00095 * 179.72701 * 21 5 4 40 40 H 1.07994 * 120.00351 * 180.22862 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0002 -0.0005 6 6 5.7787 0.0002 -0.0017 7 1 6.1419 1.0279 -0.0029 8 6 6.2897 -0.7204 1.2474 9 6 6.2877 -0.7216 -1.2511 10 7 7.7517 -0.6179 -1.3141 11 6 8.2771 -1.3006 -2.5040 12 6 9.8013 -1.1718 -2.5346 13 6 10.3401 -1.8717 -3.7556 14 1 9.6632 -2.3600 -4.4410 15 6 11.6975 -1.8895 -3.9971 16 7 12.1677 -2.5000 -5.0630 17 14 12.8684 -1.0456 -2.8114 18 1 13.2933 -2.0099 -1.7650 19 1 14.0608 -0.5625 -3.5529 20 1 12.1819 0.1063 -2.1734 21 6 3.5805 -1.1970 -0.0053 22 6 2.1982 -1.1971 0.0005 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3634 0.8899 0.5138 26 1 1.6580 2.1324 -0.0004 27 1 4.1204 2.1326 -0.0010 28 1 7.3797 -0.7208 1.2464 29 1 5.9270 -0.2062 2.1374 30 1 5.9264 -1.7481 1.2481 31 1 5.9994 -1.7718 -1.2067 32 1 5.8523 -0.2625 -2.1387 33 1 8.1763 -0.9786 -0.4729 34 1 8.0026 -2.3549 -2.4688 35 1 7.8555 -0.8451 -3.4001 36 1 10.0761 -0.1176 -2.5696 37 1 10.2226 -1.6276 -1.6386 38 1 13.1226 -2.5122 -5.2331 39 1 4.1206 -2.1323 -0.0098 40 1 1.6583 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600146786.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:21:31 Heat of formation + Delta-G solvation = -20.784160 kcal Electronic energy + Delta-G solvation = -17024.232532 eV Core-core repulsion = 14415.765828 eV Total energy + Delta-G solvation = -2608.466705 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.58857 -38.18228 -35.95220 -34.58585 -32.56650 -31.78769 -30.98855 -27.65705 -27.10262 -25.00706 -23.77185 -22.52568 -22.31175 -20.68814 -18.96685 -17.32540 -17.08558 -16.34974 -16.19854 -15.89258 -15.28323 -15.13699 -14.84159 -14.68282 -14.43707 -14.23173 -13.96098 -13.87845 -13.39650 -13.04175 -12.91978 -12.88575 -12.69402 -12.19571 -12.09264 -11.92858 -11.82946 -11.74791 -11.55100 -11.43273 -11.35259 -10.77392 -9.80089 -9.35834 -9.33001 -8.30607 -6.35580 0.44367 0.52799 1.36781 1.39650 1.52927 2.36936 2.83867 3.04884 3.28152 3.84560 3.91201 4.09802 4.12286 4.15138 4.19026 4.44821 4.48441 4.49392 4.55664 4.61093 4.75312 4.82197 4.85191 4.89522 4.94059 4.99062 5.03536 5.13393 5.24161 5.27609 5.31550 5.35903 5.47455 5.56485 5.63231 5.73307 5.79164 6.10888 6.16370 6.24581 6.53435 6.73144 7.29391 8.86198 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.047853 B = 0.003396 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.989226 B = 8242.221844 C = 8472.939125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.102 4.102 3 C -0.128 4.128 4 C -0.123 4.123 5 C -0.088 4.088 6 C -0.043 4.043 7 H 0.084 0.916 8 C -0.142 4.142 9 C 0.072 3.928 10 N -0.693 5.693 11 C 0.086 3.914 12 C -0.004 4.004 13 C -0.536 4.536 14 H 0.030 0.970 15 C 0.004 3.996 16 N -0.951 5.951 17 Si 0.956 3.044 18 H -0.264 1.264 19 H -0.284 1.284 20 H -0.247 1.247 21 C -0.122 4.122 22 C -0.130 4.130 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.138 0.862 27 H 0.130 0.870 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.029 0.971 32 H 0.058 0.942 33 H 0.343 0.657 34 H 0.016 0.984 35 H 0.052 0.948 36 H 0.024 0.976 37 H 0.020 0.980 38 H 0.267 0.733 39 H 0.122 0.878 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.897 6.596 15.774 27.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.102 4.102 3 C -0.146 4.146 4 C -0.141 4.141 5 C -0.089 4.089 6 C -0.062 4.062 7 H 0.102 0.898 8 C -0.200 4.200 9 C -0.058 4.058 10 N -0.325 5.325 11 C -0.043 4.043 12 C -0.041 4.041 13 C -0.574 4.574 14 H 0.049 0.951 15 C -0.193 4.193 16 N -0.592 5.592 17 Si 0.779 3.221 18 H -0.189 1.189 19 H -0.210 1.210 20 H -0.170 1.170 21 C -0.140 4.140 22 C -0.148 4.148 23 H 0.093 0.907 24 H 0.092 0.908 25 H 0.094 0.906 26 H 0.156 0.844 27 H 0.148 0.852 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.163 0.837 34 H 0.034 0.966 35 H 0.071 0.929 36 H 0.042 0.958 37 H 0.038 0.962 38 H 0.076 0.924 39 H 0.140 0.860 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -21.764 7.169 15.381 27.598 hybrid contribution 0.750 -0.993 -0.042 1.246 sum -21.014 6.175 15.339 26.740 Atomic orbital electron populations 1.20819 0.89547 1.03586 1.02884 1.20269 0.97453 0.93056 0.99451 1.21291 0.94021 0.98447 1.00795 1.21293 0.94741 0.97824 1.00252 1.19888 0.95027 0.93674 1.00315 1.20063 0.90483 1.01061 0.94558 0.89803 1.21842 1.01255 1.00248 0.96626 1.21959 0.87548 0.98115 0.98136 1.60521 1.05479 1.61049 1.05459 1.21627 0.95516 0.94667 0.92498 1.19430 0.93062 0.96570 0.95070 1.21419 0.92796 1.34549 1.08680 0.95150 1.26041 1.00404 0.95640 0.97210 1.70075 1.14384 1.45483 1.29263 0.85569 0.77705 0.80017 0.78809 1.18938 1.20957 1.17018 1.21150 0.94638 0.97853 1.00389 1.21271 0.94023 0.98488 1.01006 0.90707 0.90813 0.90604 0.84389 0.85178 0.91925 0.91666 0.92518 0.95296 0.92303 0.83730 0.96588 0.92900 0.95812 0.96160 0.92403 0.86024 0.84780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 10.01 71.23 0.71 -0.58 16 2 C -0.10 -1.79 5.88 -19.86 -0.12 -1.90 16 3 C -0.13 -2.29 9.70 22.27 0.22 -2.07 16 4 C -0.12 -2.49 9.67 22.27 0.22 -2.27 16 5 C -0.09 -1.94 4.78 -19.87 -0.09 -2.03 16 6 C -0.04 -0.97 2.77 -11.54 -0.03 -1.01 16 7 H 0.08 1.95 7.88 -2.39 -0.02 1.93 16 8 C -0.14 -2.85 8.78 71.98 0.63 -2.22 16 9 C 0.07 2.00 4.88 86.31 0.42 2.42 16 10 N -0.69 -22.89 6.50 -513.86 -3.34 -26.23 16 11 C 0.09 3.55 5.62 86.30 0.49 4.03 16 12 C 0.00 -0.17 4.30 29.85 0.13 -0.04 16 13 C -0.54 -31.78 9.66 25.60 0.25 -31.53 16 14 H 0.03 1.97 7.99 -2.91 -0.02 1.95 16 15 C 0.00 0.23 5.47 84.65 0.46 0.69 16 16 N -0.95 -60.68 13.96 21.45 0.30 -60.38 16 17 Si 0.96 45.03 27.47 68.60 1.88 46.91 16 18 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 19 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 20 H -0.25 -10.90 6.54 99.48 0.65 -10.25 16 21 C -0.12 -2.58 8.76 22.27 0.20 -2.39 16 22 C -0.13 -2.44 9.70 22.27 0.22 -2.23 16 23 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.07 0.72 8.09 -2.38 -0.02 0.70 16 25 H 0.08 0.71 8.09 -2.39 -0.02 0.69 16 26 H 0.14 1.85 8.06 -2.92 -0.02 1.82 16 27 H 0.13 2.30 7.95 -2.91 -0.02 2.27 16 28 H 0.06 1.27 6.68 -2.39 -0.02 1.25 16 29 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.06 1.10 7.41 -2.38 -0.02 1.08 16 31 H 0.03 0.80 7.55 -2.39 -0.02 0.78 16 32 H 0.06 1.76 8.14 -2.39 -0.02 1.75 16 33 H 0.34 10.36 6.98 -89.70 -0.63 9.74 16 34 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.02 1.15 7.20 -2.39 -0.02 1.13 16 37 H 0.02 0.93 7.57 -2.39 -0.02 0.91 16 38 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 39 H 0.12 2.43 7.16 -2.91 -0.02 2.41 16 40 H 0.13 1.99 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -67.15 324.35 2.85 -64.30 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.31 Total: 16.53 kcal Atomic # 6 Polarization: -44.82 SS G_CDS: 3.69 Total: -41.13 kcal Atomic # 7 Polarization: -83.57 SS G_CDS: -3.04 Total: -86.61 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.88 Total: 46.91 kcal Total: -67.15 2.85 -64.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600146786.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.519 kcal (2) G-P(sol) polarization free energy of solvation -67.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds