Wall clock time and date at job start Thu Apr 9 2020 12:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47298 * 2 1 4 4 H 1.08999 * 109.47273 * 305.73760 * 3 2 1 5 5 C 1.53002 * 109.47360 * 65.73651 * 3 2 1 6 6 C 1.52998 * 109.47417 * 185.00178 * 5 3 2 7 7 C 1.50695 * 109.47228 * 179.97438 * 6 5 3 8 8 C 1.38232 * 119.99963 * 269.72718 * 7 6 5 9 9 C 1.38237 * 119.99735 * 179.76647 * 8 7 6 10 10 C 1.38236 * 120.00355 * 0.50192 * 9 8 7 11 11 C 1.38232 * 119.99824 * 359.75219 * 10 9 8 12 12 C 1.38241 * 119.99952 * 89.99761 * 7 6 5 13 13 N 1.46903 * 109.47324 * 185.73528 * 3 2 1 14 14 C 1.46902 * 110.99975 * 86.74590 * 13 3 2 15 15 C 1.50701 * 109.46839 * 185.02374 * 14 13 3 16 16 H 1.07991 * 120.00070 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99588 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00214 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99883 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.46897 * 60.00053 * 19 17 15 21 21 H 1.48495 * 109.46998 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.46771 * 300.00410 * 19 17 15 23 23 H 1.08998 * 109.46877 * 293.99403 * 1 2 3 24 24 H 1.09011 * 109.46798 * 53.99196 * 1 2 3 25 25 H 1.08994 * 109.47435 * 173.98764 * 1 2 3 26 26 H 1.08999 * 109.46875 * 239.99967 * 2 1 3 27 27 H 1.08998 * 109.47024 * 120.00218 * 2 1 3 28 28 H 1.09002 * 109.46801 * 304.99693 * 5 3 2 29 29 H 1.08997 * 109.46915 * 64.99659 * 5 3 2 30 30 H 1.09002 * 109.46739 * 299.99553 * 6 5 3 31 31 H 1.08997 * 109.47502 * 59.99840 * 6 5 3 32 32 H 1.08000 * 120.00490 * 359.97438 * 8 7 6 33 33 H 1.08007 * 119.99728 * 180.22968 * 9 8 7 34 34 H 1.07999 * 120.00504 * 179.72518 * 10 9 8 35 35 H 1.08003 * 120.00429 * 179.97438 * 11 10 9 36 36 H 1.07998 * 119.99709 * 359.97438 * 12 7 6 37 37 H 1.00897 * 110.99913 * 210.70081 * 13 3 2 38 38 H 1.08999 * 109.46845 * 305.02645 * 14 13 3 39 39 H 1.09001 * 109.46785 * 65.03131 * 14 13 3 40 40 H 0.97002 * 120.00273 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5953 1.9851 -0.8341 5 6 1.6512 2.1209 1.3151 6 6 2.0507 3.5970 1.2651 7 6 1.6672 4.2653 2.5601 8 6 0.4222 4.8512 2.6933 9 6 0.0686 5.4600 3.8829 10 6 0.9638 5.4922 4.9358 11 6 2.2107 4.9109 4.8008 12 6 2.5624 4.2975 3.6130 13 7 3.5025 1.4447 -0.1384 14 6 3.8975 1.4134 -1.5530 15 6 5.3963 1.2922 -1.6534 16 1 5.9954 1.2430 -0.7563 17 6 6.0025 1.2432 -2.8908 18 7 5.2729 1.3026 -3.9833 19 14 7.8603 1.0923 -3.0154 20 1 8.3009 -0.1600 -2.3501 21 1 8.2595 1.0608 -4.4453 22 1 8.4972 2.2570 -2.3496 23 1 -0.3633 0.4179 0.9389 24 1 -0.3633 0.6042 -0.8314 25 1 -0.3634 -1.0219 -0.1076 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 0.5739 2.0409 1.4605 29 1 2.1668 1.6327 2.1421 30 1 3.1280 3.6770 1.1196 31 1 1.5352 4.0852 0.4381 32 1 -0.2754 4.8303 1.8691 33 1 -0.9055 5.9145 3.9882 34 1 0.6892 5.9718 5.8637 35 1 2.9103 4.9364 5.6232 36 1 3.5365 3.8432 3.5075 37 1 3.9091 2.2388 0.3330 38 1 3.4303 0.5585 -2.0418 39 1 3.5738 2.3327 -2.0410 40 1 5.6994 1.2685 -4.8539 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600758621.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:21:35 Heat of formation + Delta-G solvation = -3.262885 kcal Electronic energy + Delta-G solvation = -17401.139680 eV Core-core repulsion = 14793.432754 eV Total energy + Delta-G solvation = -2607.706925 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.36047 -37.27244 -33.57848 -32.88573 -31.47145 -30.89935 -29.30869 -26.60725 -24.70512 -22.94994 -22.58106 -21.60552 -20.81435 -19.46022 -16.79654 -16.35230 -15.42470 -15.26240 -14.76484 -14.57512 -14.27224 -14.02598 -13.51764 -13.30599 -13.00587 -12.75327 -12.48769 -12.09036 -11.83686 -11.56358 -11.36655 -11.27186 -11.05665 -11.05246 -10.78389 -10.65313 -10.40919 -10.32358 -10.05427 -9.68938 -9.12184 -8.94292 -8.64359 -8.43852 -7.22527 -5.99754 -4.01447 1.35267 1.37926 3.35383 3.39109 3.42369 3.77204 4.45555 4.78171 4.83864 4.95747 5.09404 5.11897 5.29348 5.34858 5.36631 5.43945 5.52048 5.58739 5.70737 5.72656 5.88906 5.98076 6.00054 6.05990 6.09321 6.25381 6.36304 6.40021 6.46271 6.48019 6.52947 6.71634 6.73888 6.85218 7.00476 7.32967 7.44548 7.83887 8.18745 8.48443 8.66898 9.07922 9.63353 11.11162 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.022036 B = 0.004644 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.347647 B = 6028.203851 C = 6908.704764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C 0.086 3.914 4 H 0.034 0.966 5 C -0.112 4.112 6 C -0.089 4.089 7 C -0.069 4.069 8 C -0.121 4.121 9 C -0.121 4.121 10 C -0.133 4.133 11 C -0.119 4.119 12 C -0.117 4.117 13 N -0.687 5.687 14 C 0.195 3.805 15 C -0.512 4.512 16 H 0.061 0.939 17 C 0.055 3.945 18 N -0.899 5.899 19 Si 0.898 3.102 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.277 1.277 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.048 0.952 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.124 0.876 37 H 0.327 0.673 38 H 0.027 0.973 39 H -0.016 1.016 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.617 5.932 14.443 18.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.149 4.149 3 C -0.024 4.024 4 H 0.052 0.948 5 C -0.150 4.150 6 C -0.126 4.126 7 C -0.069 4.069 8 C -0.139 4.139 9 C -0.139 4.139 10 C -0.151 4.151 11 C -0.137 4.137 12 C -0.135 4.135 13 N -0.319 5.319 14 C 0.068 3.932 15 C -0.551 4.551 16 H 0.079 0.921 17 C -0.146 4.146 18 N -0.539 5.539 19 Si 0.726 3.274 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.203 1.203 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.046 0.954 39 H 0.002 0.998 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.536 5.249 14.310 18.529 hybrid contribution 0.776 0.849 -0.505 1.256 sum -9.760 6.098 13.804 17.972 Atomic orbital electron populations 1.21825 0.96912 1.00963 1.01139 1.21473 0.93776 0.97055 1.02576 1.21502 0.90803 0.95043 0.95071 0.94757 1.21785 1.01018 0.93410 0.98747 1.20744 1.02389 0.95786 0.93719 1.20010 0.93911 0.96977 0.96008 1.21080 0.96326 0.98680 0.97774 1.21110 0.99398 0.99841 0.93575 1.21091 0.94384 1.00781 0.98810 1.21145 0.96623 0.98349 0.97630 1.21158 0.99777 0.99502 0.93026 1.60697 1.05425 1.47815 1.17957 1.19572 0.95865 0.95508 0.82242 1.21165 0.91859 1.49775 0.92264 0.92071 1.24986 0.98403 0.95461 0.95723 1.69953 1.35392 1.50948 0.97582 0.86565 0.85399 0.78688 0.76767 1.20182 1.21385 1.20306 0.93128 0.93116 0.93246 0.91619 0.92018 0.91752 0.91316 0.90383 0.91159 0.86230 0.86407 0.86506 0.86280 0.85794 0.85471 0.95449 0.99787 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.54 37.16 0.35 -1.67 16 2 C -0.11 -1.84 5.65 -26.73 -0.15 -1.99 16 3 C 0.09 1.51 2.11 -67.71 -0.14 1.37 16 4 H 0.03 0.65 7.83 -51.93 -0.41 0.24 16 5 C -0.11 -1.59 4.65 -26.73 -0.12 -1.72 16 6 C -0.09 -1.22 5.18 -27.89 -0.14 -1.36 16 7 C -0.07 -0.88 5.13 -104.63 -0.54 -1.41 16 8 C -0.12 -1.40 9.70 -39.58 -0.38 -1.78 16 9 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 10 C -0.13 -1.35 10.05 -39.58 -0.40 -1.75 16 11 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 12 C -0.12 -1.42 9.70 -39.58 -0.38 -1.80 16 13 N -0.69 -14.62 6.27 -107.99 -0.68 -15.30 16 14 C 0.19 5.13 5.21 -4.97 -0.03 5.11 16 15 C -0.51 -14.63 9.36 -34.44 -0.32 -14.96 16 16 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -27.09 13.29 55.43 0.74 -26.36 16 19 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H 0.05 0.61 6.77 -51.93 -0.35 0.26 16 24 H 0.05 0.68 8.14 -51.92 -0.42 0.25 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.07 1.25 7.42 -51.93 -0.39 0.86 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.06 0.84 6.50 -51.93 -0.34 0.50 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.08 1.14 6.38 -51.93 -0.33 0.81 16 31 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 32 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 33 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 34 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 35 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 36 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 37 H 0.33 6.61 6.51 -39.29 -0.26 6.35 16 38 H 0.03 0.78 7.39 -51.93 -0.38 0.39 16 39 H -0.02 -0.44 8.14 -51.93 -0.42 -0.86 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 326.25 15.07 4.92 4.92 Total: -1.00 -30.27 326.25 -9.84 -40.11 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -6.64 Total: 3.58 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: -3.15 Total: -23.81 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: 0.06 Total: -41.66 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.27 -9.84 -40.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600758621.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.846 kcal (2) G-P(sol) polarization free energy of solvation -30.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds