Wall clock time and date at job start Thu Apr 9 2020 12:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47298 * 2 1 4 4 H 1.08999 * 109.47273 * 305.73760 * 3 2 1 5 5 C 1.53002 * 109.47360 * 65.73651 * 3 2 1 6 6 C 1.52998 * 109.47417 * 185.00178 * 5 3 2 7 7 C 1.50695 * 109.47228 * 179.97438 * 6 5 3 8 8 C 1.38232 * 119.99963 * 269.72718 * 7 6 5 9 9 C 1.38237 * 119.99735 * 179.76647 * 8 7 6 10 10 C 1.38236 * 120.00355 * 0.50192 * 9 8 7 11 11 C 1.38232 * 119.99824 * 359.75219 * 10 9 8 12 12 C 1.38241 * 119.99952 * 89.99761 * 7 6 5 13 13 N 1.46903 * 109.47324 * 185.73528 * 3 2 1 14 14 C 1.46902 * 110.99975 * 86.74590 * 13 3 2 15 15 C 1.50701 * 109.46839 * 185.02374 * 14 13 3 16 16 H 1.07991 * 120.00070 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99588 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00214 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99883 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.46897 * 60.00053 * 19 17 15 21 21 H 1.48495 * 109.46998 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.46771 * 300.00410 * 19 17 15 23 23 H 1.08998 * 109.46877 * 293.99403 * 1 2 3 24 24 H 1.09011 * 109.46798 * 53.99196 * 1 2 3 25 25 H 1.08994 * 109.47435 * 173.98764 * 1 2 3 26 26 H 1.08999 * 109.46875 * 239.99967 * 2 1 3 27 27 H 1.08998 * 109.47024 * 120.00218 * 2 1 3 28 28 H 1.09002 * 109.46801 * 304.99693 * 5 3 2 29 29 H 1.08997 * 109.46915 * 64.99659 * 5 3 2 30 30 H 1.09002 * 109.46739 * 299.99553 * 6 5 3 31 31 H 1.08997 * 109.47502 * 59.99840 * 6 5 3 32 32 H 1.08000 * 120.00490 * 359.97438 * 8 7 6 33 33 H 1.08007 * 119.99728 * 180.22968 * 9 8 7 34 34 H 1.07999 * 120.00504 * 179.72518 * 10 9 8 35 35 H 1.08003 * 120.00429 * 179.97438 * 11 10 9 36 36 H 1.07998 * 119.99709 * 359.97438 * 12 7 6 37 37 H 1.00897 * 110.99913 * 210.70081 * 13 3 2 38 38 H 1.08999 * 109.46845 * 305.02645 * 14 13 3 39 39 H 1.09001 * 109.46785 * 65.03131 * 14 13 3 40 40 H 0.97002 * 120.00273 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5953 1.9851 -0.8341 5 6 1.6512 2.1209 1.3151 6 6 2.0507 3.5970 1.2651 7 6 1.6672 4.2653 2.5601 8 6 0.4222 4.8512 2.6933 9 6 0.0686 5.4600 3.8829 10 6 0.9638 5.4922 4.9358 11 6 2.2107 4.9109 4.8008 12 6 2.5624 4.2975 3.6130 13 7 3.5025 1.4447 -0.1384 14 6 3.8975 1.4134 -1.5530 15 6 5.3963 1.2922 -1.6534 16 1 5.9954 1.2430 -0.7563 17 6 6.0025 1.2432 -2.8908 18 7 5.2729 1.3026 -3.9833 19 14 7.8603 1.0923 -3.0154 20 1 8.3009 -0.1600 -2.3501 21 1 8.2595 1.0608 -4.4453 22 1 8.4972 2.2570 -2.3496 23 1 -0.3633 0.4179 0.9389 24 1 -0.3633 0.6042 -0.8314 25 1 -0.3634 -1.0219 -0.1076 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 0.5739 2.0409 1.4605 29 1 2.1668 1.6327 2.1421 30 1 3.1280 3.6770 1.1196 31 1 1.5352 4.0852 0.4381 32 1 -0.2754 4.8303 1.8691 33 1 -0.9055 5.9145 3.9882 34 1 0.6892 5.9718 5.8637 35 1 2.9103 4.9364 5.6232 36 1 3.5365 3.8432 3.5075 37 1 3.9091 2.2388 0.3330 38 1 3.4303 0.5585 -2.0418 39 1 3.5738 2.3327 -2.0410 40 1 5.6994 1.2685 -4.8539 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600758621.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:21:34 Heat of formation + Delta-G solvation = -19.887193 kcal Electronic energy + Delta-G solvation = -17401.860564 eV Core-core repulsion = 14793.432754 eV Total energy + Delta-G solvation = -2608.427809 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.27178 -38.70407 -35.40263 -34.17028 -33.24447 -31.72267 -30.49894 -28.40263 -26.17910 -24.11048 -23.66718 -23.39275 -21.77371 -20.90510 -18.52135 -17.61872 -16.88579 -16.46806 -16.25909 -15.90463 -15.71083 -15.36741 -14.67309 -14.36318 -14.20371 -14.09802 -13.79631 -13.66998 -13.34748 -13.13309 -12.70103 -12.67293 -12.61763 -12.35886 -12.09945 -12.03292 -11.90301 -11.71782 -11.54845 -11.27621 -11.11698 -10.64468 -9.77867 -9.54156 -9.06728 -8.21593 -6.32995 0.49540 0.54241 1.40392 1.44179 1.52166 2.40130 2.91879 3.11098 3.56224 3.73260 3.93606 4.07854 4.15649 4.22680 4.28815 4.34358 4.49812 4.54908 4.64737 4.67480 4.70515 4.76978 4.81754 5.01417 5.10001 5.11874 5.17577 5.20027 5.24714 5.27534 5.29539 5.44375 5.47872 5.62541 5.65598 5.66441 5.79807 6.06455 6.17689 6.51393 6.77257 6.91915 7.38121 8.89563 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.022036 B = 0.004644 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.347647 B = 6028.203851 C = 6908.704764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.109 4.109 3 C 0.084 3.916 4 H 0.019 0.981 5 C -0.096 4.096 6 C -0.083 4.083 7 C -0.085 4.085 8 C -0.131 4.131 9 C -0.124 4.124 10 C -0.133 4.133 11 C -0.125 4.125 12 C -0.134 4.134 13 N -0.685 5.685 14 C 0.212 3.788 15 C -0.535 4.535 16 H 0.063 0.937 17 C 0.001 3.999 18 N -0.935 5.935 19 Si 0.972 3.028 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.266 1.266 23 H 0.071 0.929 24 H 0.048 0.952 25 H 0.063 0.937 26 H 0.031 0.969 27 H 0.065 0.935 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.128 0.872 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.138 0.862 36 H 0.121 0.879 37 H 0.333 0.667 38 H -0.002 1.002 39 H -0.044 1.044 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.936 6.485 16.433 20.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.147 4.147 3 C -0.026 4.026 4 H 0.037 0.963 5 C -0.134 4.134 6 C -0.121 4.121 7 C -0.085 4.085 8 C -0.149 4.149 9 C -0.142 4.142 10 C -0.151 4.151 11 C -0.143 4.143 12 C -0.152 4.152 13 N -0.317 5.317 14 C 0.084 3.916 15 C -0.573 4.573 16 H 0.081 0.919 17 C -0.197 4.197 18 N -0.575 5.575 19 Si 0.796 3.204 20 H -0.193 1.193 21 H -0.207 1.207 22 H -0.191 1.191 23 H 0.090 0.910 24 H 0.067 0.933 25 H 0.082 0.918 26 H 0.050 0.950 27 H 0.084 0.916 28 H 0.103 0.897 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.146 0.854 33 H 0.160 0.840 34 H 0.161 0.839 35 H 0.156 0.844 36 H 0.139 0.861 37 H 0.152 0.848 38 H 0.016 0.984 39 H -0.026 1.026 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.868 5.804 16.323 20.451 hybrid contribution 0.811 0.702 -1.084 1.525 sum -10.057 6.507 15.239 19.383 Atomic orbital electron populations 1.21760 0.93933 1.02120 1.02184 1.21454 0.96391 0.95818 1.01084 1.21631 0.88245 0.96127 0.96581 0.96316 1.21644 1.02139 0.93369 0.96241 1.20622 1.01231 0.95557 0.94684 1.19926 0.94894 0.98249 0.95461 1.21270 0.96049 0.98800 0.98802 1.21445 1.00544 0.99172 0.93003 1.21470 0.93864 0.99972 0.99780 1.21428 0.97486 0.97823 0.97576 1.21283 0.99814 1.00354 0.93749 1.60605 1.08192 1.48185 1.14741 1.19183 0.95016 0.92759 0.84624 1.21532 0.92938 1.50167 0.92692 0.91867 1.25955 1.03885 0.94658 0.95182 1.70089 1.37709 1.51510 0.98215 0.85396 0.78741 0.79161 0.77064 1.19339 1.20746 1.19078 0.91020 0.93329 0.91834 0.94967 0.91605 0.89705 0.91287 0.92037 0.91568 0.85375 0.83976 0.83865 0.84370 0.86076 0.84787 0.98367 1.02606 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.63 9.54 71.98 0.69 -2.95 16 2 C -0.11 -3.68 5.65 30.59 0.17 -3.50 16 3 C 0.08 3.02 2.11 44.91 0.09 3.12 16 4 H 0.02 0.74 7.83 -2.39 -0.02 0.72 16 5 C -0.10 -2.69 4.65 30.59 0.14 -2.55 16 6 C -0.08 -2.29 5.18 29.85 0.15 -2.14 16 7 C -0.09 -2.10 5.13 -19.87 -0.10 -2.20 16 8 C -0.13 -2.83 9.70 22.27 0.22 -2.61 16 9 C -0.12 -2.25 10.05 22.27 0.22 -2.02 16 10 C -0.13 -2.32 10.05 22.27 0.22 -2.10 16 11 C -0.13 -2.45 10.05 22.27 0.22 -2.23 16 12 C -0.13 -3.15 9.70 22.27 0.22 -2.93 16 13 N -0.69 -30.21 6.27 -495.57 -3.11 -33.32 16 14 C 0.21 11.73 5.21 85.56 0.45 12.17 16 15 C -0.54 -31.33 9.36 25.60 0.24 -31.09 16 16 H 0.06 3.59 7.81 -2.92 -0.02 3.57 16 17 C 0.00 0.07 5.46 84.65 0.46 0.54 16 18 N -0.93 -57.64 13.29 21.45 0.28 -57.35 16 19 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 23 H 0.07 1.54 6.77 -2.39 -0.02 1.52 16 24 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 25 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.03 1.27 7.42 -2.39 -0.02 1.26 16 27 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.08 2.05 6.50 -2.39 -0.02 2.03 16 29 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.06 1.86 6.38 -2.39 -0.02 1.85 16 31 H 0.07 1.84 8.08 -2.39 -0.02 1.82 16 32 H 0.13 2.44 8.06 -2.91 -0.02 2.42 16 33 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 34 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 35 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 36 H 0.12 2.79 8.06 -2.91 -0.02 2.77 16 37 H 0.33 13.91 6.51 -89.70 -0.58 13.33 16 38 H 0.00 -0.11 7.39 -2.39 -0.02 -0.13 16 39 H -0.04 -2.60 8.14 -2.39 -0.02 -2.62 16 40 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -66.18 326.25 3.01 -63.17 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 0.41 Total: 20.92 kcal Atomic # 6 Polarization: -43.89 SS G_CDS: 3.40 Total: -40.49 kcal Atomic # 7 Polarization: -87.85 SS G_CDS: -2.82 Total: -90.67 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -66.18 3.01 -63.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600758621.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.281 kcal (2) G-P(sol) polarization free energy of solvation -66.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds