Wall clock time and date at job start Thu Apr 9 2020 12:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47316 * 2 1 4 4 H 1.09005 * 109.47042 * 54.91343 * 3 2 1 5 5 C 1.52999 * 109.46843 * 294.91255 * 3 2 1 6 6 C 1.53002 * 109.46763 * 174.99838 * 5 3 2 7 7 C 1.50700 * 109.47108 * 179.97438 * 6 5 3 8 8 C 1.38233 * 120.00107 * 269.73238 * 7 6 5 9 9 C 1.38239 * 120.00045 * 179.76697 * 8 7 6 10 10 C 1.38238 * 119.99939 * 0.49721 * 9 8 7 11 11 C 1.38236 * 119.99588 * 359.75504 * 10 9 8 12 12 C 1.38231 * 120.00461 * 359.97438 * 11 10 9 13 13 N 1.46894 * 109.47053 * 174.91302 * 3 2 1 14 14 C 1.46901 * 111.00419 * 273.46646 * 13 3 2 15 15 C 1.50698 * 109.47740 * 174.33481 * 14 13 3 16 16 H 1.08000 * 119.99745 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00390 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99642 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00272 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47215 * 89.99775 * 19 17 15 21 21 H 1.48497 * 109.46989 * 210.00165 * 19 17 15 22 22 H 1.48502 * 109.46699 * 329.99679 * 19 17 15 23 23 H 1.08996 * 109.47821 * 185.73496 * 1 2 3 24 24 H 1.09005 * 109.47135 * 65.73216 * 1 2 3 25 25 H 1.09002 * 109.47338 * 305.73921 * 1 2 3 26 26 H 1.09004 * 109.47059 * 120.00042 * 2 1 3 27 27 H 1.09006 * 109.47089 * 239.99658 * 2 1 3 28 28 H 1.08995 * 109.47565 * 294.99739 * 5 3 2 29 29 H 1.08994 * 109.47106 * 55.00049 * 5 3 2 30 30 H 1.08996 * 109.47548 * 299.99718 * 6 5 3 31 31 H 1.08999 * 109.46980 * 60.00660 * 6 5 3 32 32 H 1.08001 * 120.00499 * 359.97438 * 8 7 6 33 33 H 1.07997 * 120.00384 * 180.23234 * 9 8 7 34 34 H 1.07991 * 120.00310 * 179.72609 * 10 9 8 35 35 H 1.08010 * 119.99723 * 179.97438 * 11 10 9 36 36 H 1.08001 * 120.00283 * 179.97438 * 12 11 10 37 37 H 1.00900 * 111.00315 * 149.51487 * 13 3 2 38 38 H 1.09003 * 109.47055 * 294.34074 * 14 13 3 39 39 H 1.08997 * 109.46979 * 54.33313 * 14 13 3 40 40 H 0.96996 * 119.99428 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6042 1.9820 0.8410 5 6 1.6371 2.1258 -1.3083 6 6 2.0372 3.6017 -1.2570 7 6 1.6409 4.2747 -2.5458 8 6 2.5278 4.3155 -3.6053 9 6 2.1626 4.9286 -4.7893 10 6 0.9142 5.5099 -4.9101 11 6 0.0293 5.4737 -3.8487 12 6 0.3924 4.8557 -2.6668 13 7 3.5038 1.4442 0.1228 14 6 3.9139 1.4024 1.5328 15 6 5.4123 1.2652 1.6163 16 1 6.0012 1.2146 0.7124 17 6 6.0315 1.2043 2.8467 18 7 5.3145 1.2665 3.9475 19 14 7.8889 1.0349 2.9503 20 1 8.5080 2.3844 2.9828 21 1 8.2503 0.2945 4.1857 22 1 8.3849 0.2912 1.7645 23 1 -0.3634 -1.0224 0.1027 24 1 -0.3634 0.4224 -0.9369 25 1 -0.3634 0.6003 0.8341 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 2.1438 1.6409 -2.1426 29 1 0.5584 2.0463 -1.4425 30 1 1.5304 4.0868 -0.4227 31 1 3.1159 3.6813 -1.1228 32 1 3.5049 3.8654 -3.5095 33 1 2.8540 4.9572 -5.6184 34 1 0.6305 5.9928 -5.8334 35 1 -0.9459 5.9283 -3.9430 36 1 -0.2988 4.8278 -1.8374 37 1 3.9051 2.2419 -0.3469 38 1 3.6051 2.3228 2.0284 39 1 3.4432 0.5503 2.0230 40 1 5.7501 1.2233 4.8130 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600758623.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:21:37 Heat of formation + Delta-G solvation = -3.221211 kcal Electronic energy + Delta-G solvation = -17400.831141 eV Core-core repulsion = 14793.126023 eV Total energy + Delta-G solvation = -2607.705118 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.36162 -37.27474 -33.57976 -32.88503 -31.47345 -30.90043 -29.30720 -26.60873 -24.70411 -22.95751 -22.58179 -21.60680 -20.81735 -19.45245 -16.79760 -16.35118 -15.42650 -15.26487 -14.76416 -14.58151 -14.27383 -14.02665 -13.51826 -13.30588 -13.00634 -12.75409 -12.48693 -12.09649 -11.83505 -11.56503 -11.37161 -11.26917 -11.06093 -11.05333 -10.79864 -10.63317 -10.40008 -10.32626 -10.05447 -9.68933 -9.10967 -8.94386 -8.64433 -8.44362 -7.22530 -5.99948 -4.01475 1.35170 1.37874 3.33445 3.39473 3.44253 3.77130 4.45602 4.78112 4.83761 4.95699 5.09351 5.11849 5.29226 5.34830 5.36570 5.43893 5.51972 5.58650 5.70615 5.72557 5.88782 5.98025 6.00194 6.05951 6.09207 6.25207 6.36341 6.39942 6.46221 6.47943 6.52914 6.71563 6.73892 6.85245 7.00399 7.32935 7.44076 7.84230 8.18686 8.48529 8.66732 9.08161 9.63383 11.11025 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.022149 B = 0.004634 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.845017 B = 6041.389951 C = 6915.863322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C 0.086 3.914 4 H 0.034 0.966 5 C -0.112 4.112 6 C -0.089 4.089 7 C -0.069 4.069 8 C -0.117 4.117 9 C -0.119 4.119 10 C -0.133 4.133 11 C -0.121 4.121 12 C -0.121 4.121 13 N -0.687 5.687 14 C 0.194 3.806 15 C -0.511 4.511 16 H 0.062 0.938 17 C 0.055 3.945 18 N -0.899 5.899 19 Si 0.897 3.103 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.273 1.273 23 H 0.048 0.952 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.124 0.876 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.327 0.673 38 H -0.016 1.016 39 H 0.028 0.972 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.771 6.033 -14.332 18.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.149 4.149 3 C -0.024 4.024 4 H 0.052 0.948 5 C -0.150 4.150 6 C -0.126 4.126 7 C -0.069 4.069 8 C -0.135 4.135 9 C -0.137 4.137 10 C -0.151 4.151 11 C -0.139 4.139 12 C -0.139 4.139 13 N -0.319 5.319 14 C 0.068 3.932 15 C -0.549 4.549 16 H 0.080 0.920 17 C -0.146 4.146 18 N -0.539 5.539 19 Si 0.725 3.275 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.198 1.198 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.142 0.858 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.145 0.855 38 H 0.002 0.998 39 H 0.046 0.954 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.688 5.345 -14.211 18.567 hybrid contribution 0.776 0.847 0.519 1.261 sum -9.911 6.192 -13.691 18.001 Atomic orbital electron populations 1.21824 0.96913 1.00960 1.01145 1.21475 0.93772 0.97050 1.02586 1.21498 0.90762 0.95034 0.95114 0.94777 1.21785 1.00992 0.93387 0.98800 1.20745 1.02327 0.95760 0.93805 1.20010 0.93904 0.96997 0.95997 1.21157 0.99804 0.99509 0.92994 1.21145 0.96566 0.98360 0.97674 1.21091 0.94454 1.00771 0.98750 1.21109 0.99438 0.99793 0.93585 1.21079 0.96265 0.98650 0.97865 1.60691 1.05245 1.47472 1.18474 1.19576 0.95811 0.95513 0.82328 1.21202 0.91919 1.49505 0.92316 0.92017 1.24990 0.98449 0.95494 0.95691 1.69968 1.35383 1.51041 0.97490 0.86508 0.85424 0.78048 0.77493 1.20770 1.21287 1.19783 0.93247 0.93114 0.93124 0.91632 0.91997 0.91313 0.91738 0.91155 0.90394 0.85793 0.86280 0.86505 0.86407 0.86231 0.85482 0.99791 0.95439 0.92991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.53 37.15 0.35 -1.67 16 2 C -0.11 -1.84 5.66 -26.73 -0.15 -1.99 16 3 C 0.09 1.52 2.11 -67.72 -0.14 1.37 16 4 H 0.03 0.64 7.84 -51.93 -0.41 0.24 16 5 C -0.11 -1.59 4.64 -26.73 -0.12 -1.72 16 6 C -0.09 -1.21 5.18 -27.88 -0.14 -1.36 16 7 C -0.07 -0.87 5.13 -104.62 -0.54 -1.41 16 8 C -0.12 -1.42 9.70 -39.58 -0.38 -1.80 16 9 C -0.12 -1.29 10.05 -39.58 -0.40 -1.68 16 10 C -0.13 -1.35 10.05 -39.58 -0.40 -1.75 16 11 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 12 C -0.12 -1.40 9.70 -39.58 -0.38 -1.78 16 13 N -0.69 -14.62 6.27 -107.99 -0.68 -15.30 16 14 C 0.19 5.12 5.21 -4.98 -0.03 5.09 16 15 C -0.51 -14.60 9.36 -34.44 -0.32 -14.92 16 16 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 17 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 19 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.05 0.61 6.74 -51.93 -0.35 0.26 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 1.25 7.40 -51.93 -0.38 0.86 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.84 6.47 -51.93 -0.34 0.50 16 30 H 0.07 0.96 8.09 -51.93 -0.42 0.54 16 31 H 0.08 1.14 6.37 -51.93 -0.33 0.81 16 32 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 33 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 35 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 36 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.33 6.60 6.51 -39.29 -0.26 6.34 16 38 H -0.02 -0.44 8.14 -51.93 -0.42 -0.86 16 39 H 0.03 0.78 7.37 -51.93 -0.38 0.40 16 40 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 326.17 15.07 4.92 4.92 Total: -1.00 -30.31 326.17 -9.84 -40.15 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -6.64 Total: 3.53 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: -3.15 Total: -23.79 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: 0.06 Total: -41.66 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.31 -9.84 -40.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600758623.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.926 kcal (2) G-P(sol) polarization free energy of solvation -30.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds