Wall clock time and date at job start Thu Apr 9 2020 12:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47316 * 2 1 4 4 H 1.09005 * 109.47042 * 54.91343 * 3 2 1 5 5 C 1.52999 * 109.46843 * 294.91255 * 3 2 1 6 6 C 1.53002 * 109.46763 * 174.99838 * 5 3 2 7 7 C 1.50700 * 109.47108 * 179.97438 * 6 5 3 8 8 C 1.38233 * 120.00107 * 269.73238 * 7 6 5 9 9 C 1.38239 * 120.00045 * 179.76697 * 8 7 6 10 10 C 1.38238 * 119.99939 * 0.49721 * 9 8 7 11 11 C 1.38236 * 119.99588 * 359.75504 * 10 9 8 12 12 C 1.38231 * 120.00461 * 359.97438 * 11 10 9 13 13 N 1.46894 * 109.47053 * 174.91302 * 3 2 1 14 14 C 1.46901 * 111.00419 * 273.46646 * 13 3 2 15 15 C 1.50698 * 109.47740 * 174.33481 * 14 13 3 16 16 H 1.08000 * 119.99745 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00390 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99642 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00272 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47215 * 89.99775 * 19 17 15 21 21 H 1.48497 * 109.46989 * 210.00165 * 19 17 15 22 22 H 1.48502 * 109.46699 * 329.99679 * 19 17 15 23 23 H 1.08996 * 109.47821 * 185.73496 * 1 2 3 24 24 H 1.09005 * 109.47135 * 65.73216 * 1 2 3 25 25 H 1.09002 * 109.47338 * 305.73921 * 1 2 3 26 26 H 1.09004 * 109.47059 * 120.00042 * 2 1 3 27 27 H 1.09006 * 109.47089 * 239.99658 * 2 1 3 28 28 H 1.08995 * 109.47565 * 294.99739 * 5 3 2 29 29 H 1.08994 * 109.47106 * 55.00049 * 5 3 2 30 30 H 1.08996 * 109.47548 * 299.99718 * 6 5 3 31 31 H 1.08999 * 109.46980 * 60.00660 * 6 5 3 32 32 H 1.08001 * 120.00499 * 359.97438 * 8 7 6 33 33 H 1.07997 * 120.00384 * 180.23234 * 9 8 7 34 34 H 1.07991 * 120.00310 * 179.72609 * 10 9 8 35 35 H 1.08010 * 119.99723 * 179.97438 * 11 10 9 36 36 H 1.08001 * 120.00283 * 179.97438 * 12 11 10 37 37 H 1.00900 * 111.00315 * 149.51487 * 13 3 2 38 38 H 1.09003 * 109.47055 * 294.34074 * 14 13 3 39 39 H 1.08997 * 109.46979 * 54.33313 * 14 13 3 40 40 H 0.96996 * 119.99428 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6042 1.9820 0.8410 5 6 1.6371 2.1258 -1.3083 6 6 2.0372 3.6017 -1.2570 7 6 1.6409 4.2747 -2.5458 8 6 2.5278 4.3155 -3.6053 9 6 2.1626 4.9286 -4.7893 10 6 0.9142 5.5099 -4.9101 11 6 0.0293 5.4737 -3.8487 12 6 0.3924 4.8557 -2.6668 13 7 3.5038 1.4442 0.1228 14 6 3.9139 1.4024 1.5328 15 6 5.4123 1.2652 1.6163 16 1 6.0012 1.2146 0.7124 17 6 6.0315 1.2043 2.8467 18 7 5.3145 1.2665 3.9475 19 14 7.8889 1.0349 2.9503 20 1 8.5080 2.3844 2.9828 21 1 8.2503 0.2945 4.1857 22 1 8.3849 0.2912 1.7645 23 1 -0.3634 -1.0224 0.1027 24 1 -0.3634 0.4224 -0.9369 25 1 -0.3634 0.6003 0.8341 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 2.1438 1.6409 -2.1426 29 1 0.5584 2.0463 -1.4425 30 1 1.5304 4.0868 -0.4227 31 1 3.1159 3.6813 -1.1228 32 1 3.5049 3.8654 -3.5095 33 1 2.8540 4.9572 -5.6184 34 1 0.6305 5.9928 -5.8334 35 1 -0.9459 5.9283 -3.9430 36 1 -0.2988 4.8278 -1.8374 37 1 3.9051 2.2419 -0.3469 38 1 3.6051 2.3228 2.0284 39 1 3.4432 0.5503 2.0230 40 1 5.7501 1.2233 4.8130 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600758623.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:21:37 Heat of formation + Delta-G solvation = -19.882674 kcal Electronic energy + Delta-G solvation = -17401.553636 eV Core-core repulsion = 14793.126023 eV Total energy + Delta-G solvation = -2608.427613 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.27195 -38.70557 -35.40377 -34.16889 -33.24639 -31.72273 -30.49665 -28.40508 -26.17725 -24.11806 -23.66862 -23.39168 -21.77521 -20.89662 -18.52212 -17.61947 -16.88682 -16.47360 -16.25698 -15.90609 -15.71001 -15.37105 -14.67279 -14.36727 -14.20383 -14.09658 -13.79837 -13.66971 -13.34835 -13.12446 -12.71705 -12.67511 -12.62237 -12.34637 -12.09466 -12.03559 -11.90427 -11.71256 -11.54674 -11.26688 -11.11384 -10.65152 -9.77865 -9.54107 -9.06700 -8.21818 -6.33054 0.49551 0.54283 1.40320 1.42199 1.54056 2.40079 2.91904 3.10957 3.56221 3.73322 3.93633 4.07822 4.15653 4.22689 4.28831 4.34394 4.49750 4.54895 4.64700 4.67529 4.70744 4.76934 4.81809 5.01415 5.10001 5.11918 5.17546 5.19986 5.24736 5.27416 5.29544 5.44384 5.47989 5.62577 5.65813 5.66468 5.79838 6.06559 6.17715 6.51477 6.77441 6.91853 7.38104 8.89545 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.022149 B = 0.004634 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.845017 B = 6041.389951 C = 6915.863322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.109 4.109 3 C 0.084 3.916 4 H 0.019 0.981 5 C -0.096 4.096 6 C -0.083 4.083 7 C -0.085 4.085 8 C -0.134 4.134 9 C -0.125 4.125 10 C -0.133 4.133 11 C -0.124 4.124 12 C -0.131 4.131 13 N -0.685 5.685 14 C 0.212 3.788 15 C -0.534 4.534 16 H 0.063 0.937 17 C 0.001 3.999 18 N -0.935 5.935 19 Si 0.972 3.028 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.265 1.265 23 H 0.063 0.937 24 H 0.071 0.929 25 H 0.048 0.952 26 H 0.031 0.969 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.121 0.879 33 H 0.138 0.862 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.128 0.872 37 H 0.333 0.667 38 H -0.044 1.044 39 H -0.002 1.002 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.119 6.589 -16.296 20.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.148 4.148 3 C -0.026 4.026 4 H 0.037 0.963 5 C -0.134 4.134 6 C -0.121 4.121 7 C -0.085 4.085 8 C -0.152 4.152 9 C -0.143 4.143 10 C -0.151 4.151 11 C -0.142 4.142 12 C -0.149 4.149 13 N -0.317 5.317 14 C 0.084 3.916 15 C -0.572 4.572 16 H 0.081 0.919 17 C -0.197 4.197 18 N -0.575 5.575 19 Si 0.797 3.203 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.189 1.189 23 H 0.082 0.918 24 H 0.090 0.910 25 H 0.067 0.933 26 H 0.050 0.950 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.139 0.861 33 H 0.156 0.844 34 H 0.161 0.839 35 H 0.160 0.840 36 H 0.146 0.854 37 H 0.152 0.848 38 H -0.026 1.026 39 H 0.017 0.983 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.049 5.905 -16.196 20.476 hybrid contribution 0.822 0.701 1.092 1.536 sum -10.227 6.606 -15.105 19.401 Atomic orbital electron populations 1.21759 0.93915 1.02129 1.02191 1.21455 0.96403 0.95820 1.01074 1.21627 0.88216 0.96123 0.96608 0.96321 1.21644 1.02098 0.93344 0.96308 1.20623 1.01188 0.95525 0.94757 1.19927 0.94878 0.98260 0.95465 1.21281 0.99850 1.00362 0.93711 1.21428 0.97413 0.97836 0.97638 1.21470 0.93938 0.99971 0.99709 1.21444 1.00578 0.99125 0.93020 1.21269 0.95984 0.98774 0.98888 1.60600 1.07999 1.47860 1.15264 1.19187 0.94976 0.92781 0.84675 1.21559 0.93003 1.49920 0.92706 0.91888 1.25957 1.03920 0.94705 0.95142 1.70099 1.37701 1.51586 0.98160 0.85338 0.78755 0.78481 0.77761 1.19641 1.20687 1.18895 0.91836 0.91017 0.93305 0.94974 0.91632 0.91299 0.89688 0.91553 0.92032 0.86075 0.84373 0.83870 0.83977 0.85370 0.84790 1.02603 0.98340 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.63 9.53 71.98 0.69 -2.94 16 2 C -0.11 -3.68 5.66 30.59 0.17 -3.51 16 3 C 0.08 3.02 2.11 44.92 0.09 3.12 16 4 H 0.02 0.74 7.84 -2.38 -0.02 0.72 16 5 C -0.10 -2.69 4.64 30.59 0.14 -2.54 16 6 C -0.08 -2.29 5.18 29.85 0.15 -2.13 16 7 C -0.09 -2.10 5.13 -19.87 -0.10 -2.20 16 8 C -0.13 -3.15 9.70 22.27 0.22 -2.93 16 9 C -0.13 -2.45 10.05 22.27 0.22 -2.22 16 10 C -0.13 -2.32 10.05 22.27 0.22 -2.10 16 11 C -0.12 -2.25 10.05 22.27 0.22 -2.02 16 12 C -0.13 -2.82 9.70 22.27 0.22 -2.61 16 13 N -0.69 -30.21 6.27 -495.58 -3.11 -33.31 16 14 C 0.21 11.70 5.21 85.56 0.45 12.15 16 15 C -0.53 -31.25 9.36 25.60 0.24 -31.01 16 16 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 17 C 0.00 0.04 5.46 84.65 0.46 0.50 16 18 N -0.94 -57.63 13.29 21.45 0.28 -57.34 16 19 Si 0.97 45.08 29.54 68.60 2.03 47.11 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 22 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 23 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.07 1.54 6.74 -2.38 -0.02 1.52 16 25 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.03 1.27 7.40 -2.39 -0.02 1.25 16 27 H 0.06 2.13 8.14 -2.38 -0.02 2.12 16 28 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.08 2.05 6.47 -2.39 -0.02 2.03 16 30 H 0.07 1.84 8.09 -2.39 -0.02 1.82 16 31 H 0.06 1.86 6.37 -2.39 -0.02 1.85 16 32 H 0.12 2.79 8.06 -2.91 -0.02 2.76 16 33 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 34 H 0.14 1.70 8.06 -2.92 -0.02 1.68 16 35 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 36 H 0.13 2.44 8.06 -2.91 -0.02 2.41 16 37 H 0.33 13.90 6.51 -89.69 -0.58 13.32 16 38 H -0.04 -2.60 8.14 -2.39 -0.02 -2.62 16 39 H 0.00 -0.09 7.37 -2.39 -0.02 -0.11 16 40 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -66.24 326.17 3.01 -63.23 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 0.41 Total: 20.77 kcal Atomic # 6 Polarization: -43.85 SS G_CDS: 3.40 Total: -40.45 kcal Atomic # 7 Polarization: -87.84 SS G_CDS: -2.82 Total: -90.66 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -66.24 3.01 -63.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600758623.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.347 kcal (2) G-P(sol) polarization free energy of solvation -66.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds