Wall clock time and date at job start Thu Apr 9 2020 12:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47083 * 2 1 4 4 C 1.38305 * 119.96305 * 270.01720 * 3 2 1 5 5 C 1.38267 * 120.15106 * 179.97438 * 4 3 2 6 6 C 1.38129 * 120.07057 * 359.74597 * 5 4 3 7 7 C 1.38887 * 119.92725 * 0.48674 * 6 5 4 8 8 N 1.39670 * 120.07431 * 179.79141 * 7 6 5 9 9 C 1.46497 * 120.00372 * 359.72126 * 8 7 6 10 10 C 1.52999 * 109.47479 * 179.97438 * 9 8 7 11 11 H 1.08999 * 109.47296 * 305.00360 * 10 9 8 12 12 C 1.52996 * 109.47239 * 65.00221 * 10 9 8 13 13 C 1.52999 * 109.47323 * 185.00169 * 10 9 8 14 14 C 1.50702 * 109.47522 * 175.00325 * 13 10 9 15 15 H 1.08002 * 119.99446 * 359.97438 * 14 13 10 16 16 C 1.37871 * 120.00072 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99826 * 179.72119 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46758 * 269.72576 * 18 16 14 20 20 H 1.48499 * 109.47026 * 29.72423 * 18 16 14 21 21 H 1.48496 * 109.47474 * 149.72459 * 18 16 14 22 22 C 1.38087 * 119.96156 * 89.99828 * 3 2 1 23 23 H 1.09002 * 109.46638 * 60.00443 * 1 2 3 24 24 H 1.08995 * 109.46916 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47403 * 300.00133 * 1 2 3 26 26 H 1.08997 * 109.47403 * 239.99867 * 2 1 3 27 27 H 1.09007 * 109.47084 * 119.99667 * 2 1 3 28 28 H 1.07994 * 119.92518 * 359.97438 * 4 3 2 29 29 H 1.07996 * 119.96293 * 180.02562 * 5 4 3 30 30 H 1.08001 * 120.03638 * 180.27881 * 6 5 4 31 31 H 0.97005 * 120.00373 * 179.72179 * 8 7 6 32 32 H 1.09004 * 109.47078 * 59.99948 * 9 8 7 33 33 H 1.08999 * 109.47478 * 300.00426 * 9 8 7 34 34 H 1.09001 * 109.47667 * 179.97438 * 12 10 9 35 35 H 1.09008 * 109.47037 * 300.00381 * 12 10 9 36 36 H 1.09007 * 109.47198 * 59.99899 * 12 10 9 37 37 H 1.09000 * 109.47527 * 54.99924 * 13 10 9 38 38 H 1.09001 * 109.47054 * 295.00014 * 13 10 9 39 39 H 0.96999 * 120.00128 * 180.27192 * 17 16 14 40 40 H 1.07992 * 120.03662 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2622 2.0722 -1.1982 5 6 2.7226 3.3760 -1.2027 6 6 2.9494 4.0340 -0.0096 7 6 2.7242 3.3813 1.1954 8 7 2.9568 4.0423 2.4036 9 6 3.4446 5.4237 2.4008 10 6 3.6137 5.9078 3.8423 11 1 2.6751 5.7794 4.3813 12 6 4.7114 5.0924 4.5286 13 6 4.0029 7.3874 3.8410 14 6 4.0498 7.8958 5.2589 15 1 3.8241 7.2302 6.0789 16 6 4.3797 9.2109 5.5092 17 7 4.4152 9.6559 6.7463 18 14 4.7693 10.3624 4.0909 19 1 6.2253 10.3176 3.8026 20 1 4.0127 9.9371 2.8859 21 1 4.3795 11.7479 4.4566 22 6 2.2622 2.0710 1.1963 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 2.0818 1.5613 -2.1324 29 1 2.9007 3.8818 -2.1401 30 1 3.3047 5.0539 -0.0138 31 1 2.7953 3.5867 3.2447 32 1 2.7263 6.0616 1.8856 33 1 4.4047 5.4689 1.8869 34 1 4.8323 5.4376 5.5555 35 1 4.4342 4.0382 4.5295 36 1 5.6502 5.2207 3.9897 37 1 3.2654 7.9567 3.2752 38 1 4.9838 7.5048 3.3805 39 1 4.6435 10.5821 6.9222 40 1 2.0825 1.5618 2.1316 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602484137.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:21:43 Heat of formation + Delta-G solvation = -5.489351 kcal Electronic energy + Delta-G solvation = -17211.033793 eV Core-core repulsion = 14603.230321 eV Total energy + Delta-G solvation = -2607.803472 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.51440 -36.96836 -34.63918 -33.28038 -32.07883 -29.86444 -28.73763 -27.36281 -25.79241 -23.93414 -22.45823 -22.20554 -20.12287 -19.32353 -17.05886 -16.71860 -16.04227 -15.45849 -14.79055 -14.42686 -14.29918 -14.02049 -13.59031 -13.30435 -13.20624 -13.00096 -12.77141 -12.36283 -11.92799 -11.90056 -11.72133 -11.46599 -11.11425 -11.03795 -10.90810 -10.73569 -10.53335 -10.06712 -9.80709 -9.73599 -9.61079 -9.15211 -8.64899 -8.56886 -7.20939 -6.07182 -4.05234 1.51632 1.75678 3.28523 3.36467 3.39297 3.68782 3.97339 4.42438 4.72226 4.85149 5.10299 5.23495 5.25965 5.29719 5.37624 5.42087 5.52927 5.56426 5.65009 5.67182 5.76789 5.79249 5.98411 6.03337 6.09498 6.13853 6.27556 6.31118 6.46913 6.61924 6.67150 6.77261 6.80854 6.97307 7.01666 7.18193 7.34726 7.55649 7.75664 7.95099 8.50083 8.97062 9.55064 11.06061 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.041937 B = 0.003838 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.511992 B = 7293.832086 C = 7703.257547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.038 4.038 4 C -0.189 4.189 5 C -0.069 4.069 6 C -0.206 4.206 7 C 0.227 3.773 8 N -0.741 5.741 9 C 0.124 3.876 10 C -0.087 4.087 11 H 0.068 0.932 12 C -0.134 4.134 13 C -0.006 4.006 14 C -0.517 4.517 15 H 0.074 0.926 16 C 0.066 3.934 17 N -0.903 5.903 18 Si 0.878 3.122 19 H -0.277 1.277 20 H -0.265 1.265 21 H -0.288 1.288 22 C -0.201 4.201 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.112 0.888 29 H 0.116 0.884 30 H 0.120 0.880 31 H 0.398 0.602 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.033 0.967 36 H 0.046 0.954 37 H 0.017 0.983 38 H 0.014 0.986 39 H 0.263 0.737 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.680 -16.408 -14.382 22.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.038 4.038 4 C -0.209 4.209 5 C -0.088 4.088 6 C -0.228 4.228 7 C 0.122 3.878 8 N -0.368 5.368 9 C 0.000 4.000 10 C -0.106 4.106 11 H 0.086 0.914 12 C -0.191 4.191 13 C -0.044 4.044 14 C -0.555 4.555 15 H 0.092 0.908 16 C -0.135 4.135 17 N -0.542 5.542 18 Si 0.706 3.294 19 H -0.203 1.203 20 H -0.190 1.190 21 H -0.214 1.214 22 C -0.224 4.224 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.130 0.870 29 H 0.134 0.866 30 H 0.138 0.862 31 H 0.233 0.767 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.052 0.948 36 H 0.065 0.935 37 H 0.035 0.965 38 H 0.032 0.968 39 H 0.073 0.927 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.569 -16.022 -14.271 21.937 hybrid contribution 0.234 0.691 -0.285 0.783 sum -4.335 -15.331 -14.556 21.580 Atomic orbital electron populations 1.21728 0.94836 1.01381 1.02325 1.20535 0.96105 0.93062 1.02489 1.19540 0.96341 0.95268 0.92696 1.20656 1.07498 0.95788 0.96954 1.20833 0.96517 0.94335 0.97138 1.20676 1.09983 1.00950 0.91233 1.17893 0.92126 0.91079 0.86744 1.44963 1.72518 1.14448 1.04903 1.21629 0.98056 0.81070 0.99212 1.21242 0.99270 0.97997 0.92117 0.91373 1.21733 0.98049 0.97070 1.02236 1.19566 0.96023 0.90474 0.98323 1.21085 1.46868 0.96133 0.91367 0.90833 1.25021 0.94924 0.98153 0.95400 1.69909 1.49293 1.16133 1.18912 0.86801 0.79027 0.80232 0.83367 1.20311 1.19007 1.21401 1.20402 1.09913 0.94248 0.97870 0.92570 0.92667 0.92506 0.91247 0.91281 0.87026 0.86590 0.86224 0.76696 0.92648 0.92666 0.91243 0.94842 0.93531 0.96475 0.96808 0.92727 0.86660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.89 37.16 0.37 -0.82 16 2 C -0.08 -0.76 6.06 -27.88 -0.17 -0.93 16 3 C -0.04 -0.44 5.13 -104.65 -0.54 -0.97 16 4 C -0.19 -2.18 9.70 -39.55 -0.38 -2.56 16 5 C -0.07 -0.84 10.04 -39.61 -0.40 -1.24 16 6 C -0.21 -2.83 9.31 -39.38 -0.37 -3.19 16 7 C 0.23 3.19 6.65 -83.79 -0.56 2.64 16 8 N -0.74 -10.58 5.46 -58.64 -0.32 -10.90 16 9 C 0.12 1.98 4.30 -4.04 -0.02 1.96 16 10 C -0.09 -1.63 2.37 -90.62 -0.22 -1.85 16 11 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 12 C -0.13 -2.37 8.88 37.16 0.33 -2.04 16 13 C -0.01 -0.14 3.52 -27.88 -0.10 -0.24 16 14 C -0.52 -14.25 8.96 -34.44 -0.31 -14.56 16 15 H 0.07 2.17 7.30 -52.49 -0.38 1.79 16 16 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 17 N -0.90 -27.57 13.96 55.43 0.77 -26.79 16 18 Si 0.88 21.46 27.47 -169.99 -4.67 16.79 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 C -0.20 -2.56 9.55 -39.38 -0.38 -2.94 16 23 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 27 H 0.07 0.58 8.08 -51.92 -0.42 0.16 16 28 H 0.11 1.07 8.06 -52.49 -0.42 0.65 16 29 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 30 H 0.12 1.62 6.73 -52.49 -0.35 1.27 16 31 H 0.40 5.28 7.67 -40.82 -0.31 4.97 16 32 H 0.06 0.89 7.94 -51.93 -0.41 0.48 16 33 H 0.06 0.88 7.96 -51.93 -0.41 0.46 16 34 H 0.07 1.38 6.95 -51.93 -0.36 1.02 16 35 H 0.03 0.50 7.18 -51.92 -0.37 0.13 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 38 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 39 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 LS Contribution 323.33 15.07 4.87 4.87 Total: -1.00 -29.60 323.33 -8.94 -38.54 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -6.76 Total: 2.44 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: -2.83 Total: -24.94 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.45 Total: -37.69 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.60 -8.94 -38.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602484137.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.049 kcal (2) G-P(sol) polarization free energy of solvation -29.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds