Wall clock time and date at job start Thu Apr 9 2020 12:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47083 * 2 1 4 4 C 1.38305 * 119.96305 * 270.01720 * 3 2 1 5 5 C 1.38267 * 120.15106 * 179.97438 * 4 3 2 6 6 C 1.38129 * 120.07057 * 359.74597 * 5 4 3 7 7 C 1.38887 * 119.92725 * 0.48674 * 6 5 4 8 8 N 1.39670 * 120.07431 * 179.79141 * 7 6 5 9 9 C 1.46497 * 120.00372 * 359.72126 * 8 7 6 10 10 C 1.52999 * 109.47479 * 179.97438 * 9 8 7 11 11 H 1.08999 * 109.47296 * 305.00360 * 10 9 8 12 12 C 1.52996 * 109.47239 * 65.00221 * 10 9 8 13 13 C 1.52999 * 109.47323 * 185.00169 * 10 9 8 14 14 C 1.50702 * 109.47522 * 175.00325 * 13 10 9 15 15 H 1.08002 * 119.99446 * 359.97438 * 14 13 10 16 16 C 1.37871 * 120.00072 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99826 * 179.72119 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46758 * 269.72576 * 18 16 14 20 20 H 1.48499 * 109.47026 * 29.72423 * 18 16 14 21 21 H 1.48496 * 109.47474 * 149.72459 * 18 16 14 22 22 C 1.38087 * 119.96156 * 89.99828 * 3 2 1 23 23 H 1.09002 * 109.46638 * 60.00443 * 1 2 3 24 24 H 1.08995 * 109.46916 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47403 * 300.00133 * 1 2 3 26 26 H 1.08997 * 109.47403 * 239.99867 * 2 1 3 27 27 H 1.09007 * 109.47084 * 119.99667 * 2 1 3 28 28 H 1.07994 * 119.92518 * 359.97438 * 4 3 2 29 29 H 1.07996 * 119.96293 * 180.02562 * 5 4 3 30 30 H 1.08001 * 120.03638 * 180.27881 * 6 5 4 31 31 H 0.97005 * 120.00373 * 179.72179 * 8 7 6 32 32 H 1.09004 * 109.47078 * 59.99948 * 9 8 7 33 33 H 1.08999 * 109.47478 * 300.00426 * 9 8 7 34 34 H 1.09001 * 109.47667 * 179.97438 * 12 10 9 35 35 H 1.09008 * 109.47037 * 300.00381 * 12 10 9 36 36 H 1.09007 * 109.47198 * 59.99899 * 12 10 9 37 37 H 1.09000 * 109.47527 * 54.99924 * 13 10 9 38 38 H 1.09001 * 109.47054 * 295.00014 * 13 10 9 39 39 H 0.96999 * 120.00128 * 180.27192 * 17 16 14 40 40 H 1.07992 * 120.03662 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2622 2.0722 -1.1982 5 6 2.7226 3.3760 -1.2027 6 6 2.9494 4.0340 -0.0096 7 6 2.7242 3.3813 1.1954 8 7 2.9568 4.0423 2.4036 9 6 3.4446 5.4237 2.4008 10 6 3.6137 5.9078 3.8423 11 1 2.6751 5.7794 4.3813 12 6 4.7114 5.0924 4.5286 13 6 4.0029 7.3874 3.8410 14 6 4.0498 7.8958 5.2589 15 1 3.8241 7.2302 6.0789 16 6 4.3797 9.2109 5.5092 17 7 4.4152 9.6559 6.7463 18 14 4.7693 10.3624 4.0909 19 1 6.2253 10.3176 3.8026 20 1 4.0127 9.9371 2.8859 21 1 4.3795 11.7479 4.4566 22 6 2.2622 2.0710 1.1963 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 2.0818 1.5613 -2.1324 29 1 2.9007 3.8818 -2.1401 30 1 3.3047 5.0539 -0.0138 31 1 2.7953 3.5867 3.2447 32 1 2.7263 6.0616 1.8856 33 1 4.4047 5.4689 1.8869 34 1 4.8323 5.4376 5.5555 35 1 4.4342 4.0382 4.5295 36 1 5.6502 5.2207 3.9897 37 1 3.2654 7.9567 3.2752 38 1 4.9838 7.5048 3.3805 39 1 4.6435 10.5821 6.9222 40 1 2.0825 1.5618 2.1316 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602484137.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:21:43 Heat of formation + Delta-G solvation = -21.073917 kcal Electronic energy + Delta-G solvation = -17211.709591 eV Core-core repulsion = 14603.230321 eV Total energy + Delta-G solvation = -2608.479270 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.47997 -38.27749 -35.91365 -34.54958 -33.76908 -30.92650 -29.90276 -28.94260 -27.11189 -24.92283 -24.06731 -23.13817 -21.17246 -20.80366 -18.99551 -17.87599 -17.08840 -16.64627 -16.15979 -16.00317 -15.26616 -15.21464 -14.85195 -14.59155 -14.30768 -14.10370 -14.03130 -13.82020 -13.51752 -12.95350 -12.87021 -12.72191 -12.53129 -12.29929 -12.21524 -11.77955 -11.74557 -11.63954 -11.54154 -11.33455 -11.13009 -10.81407 -10.75257 -9.56905 -8.27567 -8.25021 -6.30479 0.58299 0.80223 1.36233 1.38015 1.49333 2.36836 2.57129 3.03151 3.08014 3.91491 3.99418 4.08602 4.13089 4.27583 4.32388 4.42265 4.55761 4.61406 4.68857 4.72934 4.75651 4.77816 4.87378 4.91679 5.02954 5.12377 5.18481 5.22190 5.25598 5.33331 5.41946 5.45689 5.51275 5.62345 5.67937 5.71189 5.87063 6.07052 6.30173 6.50422 6.77079 6.89745 7.33413 8.89024 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.041937 B = 0.003838 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.511992 B = 7293.832086 C = 7703.257547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 C -0.042 4.042 4 C -0.191 4.191 5 C -0.074 4.074 6 C -0.225 4.225 7 C 0.208 3.792 8 N -0.742 5.742 9 C 0.140 3.860 10 C -0.081 4.081 11 H 0.058 0.942 12 C -0.127 4.127 13 C -0.005 4.005 14 C -0.520 4.520 15 H 0.036 0.964 16 C 0.002 3.998 17 N -0.953 5.953 18 Si 0.946 3.054 19 H -0.268 1.268 20 H -0.245 1.245 21 H -0.287 1.287 22 C -0.210 4.210 23 H 0.054 0.946 24 H 0.071 0.929 25 H 0.046 0.954 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.134 0.866 29 H 0.136 0.864 30 H 0.116 0.884 31 H 0.402 0.598 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.038 0.962 35 H 0.061 0.939 36 H 0.049 0.951 37 H 0.020 0.980 38 H 0.021 0.979 39 H 0.265 0.735 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.844 -17.698 -17.169 25.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.121 4.121 3 C -0.043 4.043 4 C -0.211 4.211 5 C -0.093 4.093 6 C -0.248 4.248 7 C 0.104 3.896 8 N -0.372 5.372 9 C 0.016 3.984 10 C -0.100 4.100 11 H 0.077 0.923 12 C -0.184 4.184 13 C -0.043 4.043 14 C -0.558 4.558 15 H 0.055 0.945 16 C -0.194 4.194 17 N -0.595 5.595 18 Si 0.770 3.230 19 H -0.193 1.193 20 H -0.169 1.169 21 H -0.213 1.213 22 C -0.233 4.233 23 H 0.073 0.927 24 H 0.090 0.910 25 H 0.065 0.935 26 H 0.102 0.898 27 H 0.093 0.907 28 H 0.151 0.849 29 H 0.154 0.846 30 H 0.134 0.866 31 H 0.237 0.763 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.057 0.943 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.038 0.962 38 H 0.039 0.961 39 H 0.074 0.926 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.742 -17.347 -17.080 24.802 hybrid contribution 0.240 0.976 0.603 1.172 sum -4.502 -16.371 -16.476 23.659 Atomic orbital electron populations 1.21713 0.94264 1.02332 1.01762 1.20590 0.96488 0.91499 1.03488 1.19903 0.95504 0.96516 0.92329 1.20999 1.06476 0.95664 0.97923 1.21124 0.95971 0.94745 0.97456 1.20827 1.10903 1.01146 0.91878 1.18073 0.93182 0.91755 0.86561 1.44774 1.73225 1.13741 1.05415 1.21288 0.98348 0.82094 0.96673 1.21071 0.98955 0.95692 0.94245 0.92340 1.21642 0.98029 0.98581 1.00165 1.19516 0.96454 0.93166 0.95116 1.21421 1.45706 0.95754 0.92944 0.94530 1.25986 0.95026 1.00217 0.98189 1.70067 1.51183 1.16732 1.21479 0.85711 0.79409 0.77582 0.80280 1.19283 1.16873 1.21293 1.20606 1.09864 0.93940 0.98884 0.92721 0.91004 0.93480 0.89837 0.90744 0.84853 0.84593 0.86563 0.76290 0.92826 0.92300 0.94307 0.91986 0.93152 0.96205 0.96101 0.92645 0.85839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.89 71.98 0.71 -1.29 16 2 C -0.08 -1.26 6.06 29.85 0.18 -1.08 16 3 C -0.04 -0.87 5.13 -19.88 -0.10 -0.97 16 4 C -0.19 -3.89 9.70 22.29 0.22 -3.67 16 5 C -0.07 -1.64 10.04 22.25 0.22 -1.42 16 6 C -0.22 -5.85 9.31 22.40 0.21 -5.64 16 7 C 0.21 5.58 6.65 38.21 0.25 5.83 16 8 N -0.74 -20.30 5.46 -339.42 -1.85 -22.15 16 9 C 0.14 4.29 4.30 86.38 0.37 4.67 16 10 C -0.08 -2.98 2.37 -10.80 -0.03 -3.00 16 11 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 12 C -0.13 -4.46 8.88 71.98 0.64 -3.82 16 13 C 0.00 -0.21 3.52 29.85 0.10 -0.10 16 14 C -0.52 -29.36 8.96 25.60 0.23 -29.13 16 15 H 0.04 2.27 7.30 -2.91 -0.02 2.25 16 16 C 0.00 0.12 5.47 84.65 0.46 0.59 16 17 N -0.95 -59.83 13.96 21.45 0.30 -59.53 16 18 Si 0.95 44.02 27.47 68.60 1.88 45.90 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 20 H -0.25 -10.52 6.54 99.48 0.65 -9.87 16 21 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 22 C -0.21 -5.00 9.55 22.40 0.21 -4.79 16 23 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.08 1.04 8.08 -2.39 -0.02 1.02 16 27 H 0.07 1.06 8.08 -2.38 -0.02 1.04 16 28 H 0.13 2.10 8.06 -2.91 -0.02 2.07 16 29 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 30 H 0.12 3.01 6.73 -2.91 -0.02 2.99 16 31 H 0.40 10.18 7.67 -92.70 -0.71 9.47 16 32 H 0.05 1.66 7.94 -2.38 -0.02 1.64 16 33 H 0.06 1.77 7.96 -2.39 -0.02 1.75 16 34 H 0.04 1.58 6.95 -2.39 -0.02 1.56 16 35 H 0.06 1.80 7.18 -2.38 -0.02 1.78 16 36 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.02 0.88 7.20 -2.39 -0.02 0.87 16 38 H 0.02 0.92 7.57 -2.39 -0.02 0.90 16 39 H 0.26 15.55 8.31 -92.71 -0.77 14.77 16 40 H 0.12 2.63 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -64.31 323.33 4.25 -60.07 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: 0.23 Total: 19.55 kcal Atomic # 6 Polarization: -47.53 SS G_CDS: 3.69 Total: -43.84 kcal Atomic # 7 Polarization: -80.13 SS G_CDS: -1.55 Total: -81.68 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.88 Total: 45.90 kcal Total: -64.31 4.25 -60.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602484137.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.992 kcal (2) G-P(sol) polarization free energy of solvation -64.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds