Wall clock time and date at job start Thu Apr 9 2020 12:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47204 * 2 1 4 4 C 1.38291 * 119.92195 * 270.27769 * 3 2 1 5 5 C 1.38103 * 120.07426 * 180.27995 * 4 3 2 6 6 C 1.38918 * 119.92232 * 359.43747 * 5 4 3 7 7 N 1.39672 * 120.07035 * 180.26003 * 6 5 4 8 8 C 1.46507 * 119.99644 * 179.97438 * 7 6 5 9 9 C 1.53003 * 109.47165 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.46991 * 54.99516 * 9 8 7 11 11 C 1.53003 * 109.46953 * 295.00519 * 9 8 7 12 12 C 1.52994 * 109.47246 * 175.00206 * 9 8 7 13 13 C 1.50699 * 109.47018 * 185.00029 * 12 9 8 14 14 H 1.08001 * 120.00410 * 359.97438 * 13 12 9 15 15 C 1.37881 * 119.99724 * 180.02562 * 13 12 9 16 16 N 1.31506 * 120.00100 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99793 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47235 * 60.00211 * 17 15 13 19 19 H 1.48501 * 109.47257 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47620 * 300.00038 * 17 15 13 21 21 C 1.38912 * 119.85053 * 0.28131 * 6 5 4 22 22 C 1.38103 * 119.92423 * 0.02562 * 21 6 5 23 23 H 1.08994 * 109.47374 * 300.00161 * 1 2 3 24 24 H 1.08995 * 109.46996 * 60.00791 * 1 2 3 25 25 H 1.09006 * 109.46864 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47809 * 239.99673 * 2 1 3 27 27 H 1.09008 * 109.47176 * 119.99352 * 2 1 3 28 28 H 1.08004 * 119.96541 * 359.97438 * 4 3 2 29 29 H 1.08002 * 120.04122 * 179.72165 * 5 4 3 30 30 H 0.97003 * 120.00570 * 0.02562 * 7 6 5 31 31 H 1.09001 * 109.47449 * 299.99961 * 8 7 6 32 32 H 1.08999 * 109.46663 * 60.00258 * 8 7 6 33 33 H 1.09010 * 109.46784 * 299.99360 * 11 9 8 34 34 H 1.08995 * 109.47463 * 59.99480 * 11 9 8 35 35 H 1.09003 * 109.47348 * 180.02562 * 11 9 8 36 36 H 1.08997 * 109.47273 * 305.00205 * 12 9 8 37 37 H 1.09002 * 109.46909 * 65.00095 * 12 9 8 38 38 H 0.97003 * 120.00153 * 180.02562 * 16 15 13 39 39 H 1.08001 * 120.03541 * 180.02562 * 21 6 5 40 40 H 1.07998 * 119.95667 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2568 2.0731 -1.1986 5 6 2.7226 3.3732 -1.2023 6 6 2.9546 4.0296 -0.0001 7 7 3.4206 5.3463 -0.0003 8 6 3.6641 6.0372 1.2685 9 6 4.1668 7.4550 0.9888 10 1 3.4572 7.9711 0.3421 11 6 5.5299 7.3857 0.2974 12 6 4.3023 8.2176 2.3083 13 6 4.6787 9.6490 2.0247 14 1 4.8087 9.9815 1.0055 15 6 4.8582 10.5339 3.0668 16 7 4.7004 10.1289 4.3079 17 14 5.3255 12.3080 2.7154 18 1 4.2713 12.9422 1.8837 19 1 5.4570 13.0483 3.9960 20 1 6.6191 12.3444 1.9871 21 6 2.7225 3.3733 1.2020 22 6 2.2627 2.0711 1.1984 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 2.0723 1.5636 -2.1328 29 1 2.9020 3.8806 -2.1386 30 1 3.5822 5.8036 -0.8403 31 1 2.7369 6.0861 1.8395 32 1 4.4149 5.4922 1.8406 33 1 6.2395 6.8696 0.9441 34 1 5.4333 6.8424 -0.6426 35 1 5.8882 8.3958 0.0985 36 1 3.3528 8.1906 2.8427 37 1 5.0763 7.7524 2.9188 38 1 4.8264 10.7516 5.0410 39 1 2.9015 3.8810 2.1383 40 1 2.0825 1.5602 2.1327 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602485510.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:21:45 Heat of formation + Delta-G solvation = -9.110688 kcal Electronic energy + Delta-G solvation = -17095.087127 eV Core-core repulsion = 14487.126622 eV Total energy + Delta-G solvation = -2607.960505 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.43875 -36.89612 -34.67103 -32.84927 -31.68979 -30.75711 -28.23695 -26.84313 -25.74684 -23.43123 -23.04226 -21.99681 -20.42458 -19.28616 -17.02031 -16.52709 -15.71295 -15.26611 -14.60905 -14.51336 -14.22416 -13.97230 -13.47832 -13.36377 -13.07650 -12.78122 -12.68182 -12.40507 -12.09150 -11.75328 -11.50329 -11.21163 -10.94621 -10.89592 -10.88720 -10.68627 -10.43175 -10.34581 -9.96193 -9.55272 -9.31374 -9.07768 -8.76608 -8.38612 -7.07536 -6.03206 -4.05251 1.60383 1.77179 3.30801 3.35715 3.37558 3.78032 4.02502 4.43386 4.87592 4.89573 5.15193 5.17741 5.32581 5.34273 5.49794 5.53049 5.59581 5.66582 5.69078 5.79607 5.89694 5.92787 6.00470 6.12465 6.18969 6.20233 6.36507 6.41546 6.52805 6.59476 6.82167 6.85548 6.98590 7.01599 7.09352 7.60120 7.62790 7.74150 7.95274 8.02129 8.37745 9.00209 9.58511 11.08198 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.054304 B = 0.003424 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.495941 B = 8176.462911 C = 8481.825446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.074 4.074 3 C -0.157 4.157 4 C -0.070 4.070 5 C -0.203 4.203 6 C 0.222 3.778 7 N -0.741 5.741 8 C 0.126 3.874 9 C -0.096 4.096 10 H 0.061 0.939 11 C -0.132 4.132 12 C 0.031 3.969 13 C -0.517 4.517 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.891 3.109 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.198 4.198 22 C -0.068 4.068 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.397 0.603 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.046 0.954 34 H 0.030 0.970 35 H 0.063 0.937 36 H 0.017 0.983 37 H 0.018 0.982 38 H 0.261 0.739 39 H 0.122 0.878 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.079 -16.861 -9.030 19.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 C -0.159 4.159 4 C -0.088 4.088 5 C -0.226 4.226 6 C 0.116 3.884 7 N -0.369 5.369 8 C 0.002 3.998 9 C -0.115 4.115 10 H 0.080 0.920 11 C -0.189 4.189 12 C -0.007 4.007 13 C -0.556 4.556 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.534 5.534 17 Si 0.719 3.281 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.221 4.221 22 C -0.086 4.086 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.132 0.868 29 H 0.133 0.867 30 H 0.231 0.769 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.049 0.951 35 H 0.082 0.918 36 H 0.035 0.965 37 H 0.037 0.963 38 H 0.071 0.929 39 H 0.140 0.860 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.030 -16.685 -8.631 19.447 hybrid contribution 0.349 1.306 -0.366 1.401 sum -4.682 -15.379 -8.997 18.422 Atomic orbital electron populations 1.21769 0.95485 1.01022 1.02114 1.20360 0.95582 0.93179 1.01975 1.19524 1.06587 0.96674 0.93134 1.20646 0.97303 0.93811 0.97075 1.20540 1.09647 0.96305 0.96123 1.17936 0.91656 0.85026 0.93747 1.45021 1.71984 1.10886 1.08989 1.21622 0.99623 0.93657 0.84858 1.21438 0.96361 0.92519 1.01166 0.92013 1.21721 0.97332 1.01748 0.98101 1.19071 0.97290 0.94301 0.90033 1.21155 1.47010 0.94752 0.92657 0.92616 1.25011 0.95563 0.98714 0.95138 1.69945 1.49749 1.35349 0.98395 0.86673 0.79041 0.84920 0.77454 1.20279 1.21294 1.20264 1.20697 1.08576 0.96028 0.96758 1.20726 0.96901 0.93859 0.97154 0.92680 0.92776 0.93008 0.91814 0.91727 0.86807 0.86668 0.76852 0.92608 0.92667 0.93482 0.95106 0.91778 0.96460 0.96319 0.92913 0.86035 0.86666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.89 37.16 0.37 -0.87 16 2 C -0.07 -0.68 6.06 -27.88 -0.17 -0.85 16 3 C -0.16 -1.85 5.14 -104.59 -0.54 -2.39 16 4 C -0.07 -0.83 9.69 -39.61 -0.38 -1.21 16 5 C -0.20 -2.64 9.90 -39.38 -0.39 -3.03 16 6 C 0.22 3.23 6.65 -83.78 -0.56 2.67 16 7 N -0.74 -11.04 5.46 -58.62 -0.32 -11.36 16 8 C 0.13 2.14 4.30 -4.04 -0.02 2.12 16 9 C -0.10 -1.87 2.37 -90.62 -0.22 -2.08 16 10 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 11 C -0.13 -2.38 8.88 37.16 0.33 -2.05 16 12 C 0.03 0.76 4.45 -27.89 -0.12 0.63 16 13 C -0.52 -14.16 8.41 -34.44 -0.29 -14.45 16 14 H 0.06 1.48 7.06 -52.49 -0.37 1.11 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -26.53 13.29 55.43 0.74 -25.80 16 17 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 C -0.20 -2.84 9.31 -39.38 -0.37 -3.20 16 22 C -0.07 -0.86 9.69 -39.61 -0.38 -1.24 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 27 H 0.06 0.55 8.08 -51.92 -0.42 0.13 16 28 H 0.11 1.10 8.06 -52.48 -0.42 0.68 16 29 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 30 H 0.40 5.44 7.67 -40.82 -0.31 5.13 16 31 H 0.06 0.97 7.95 -51.93 -0.41 0.56 16 32 H 0.06 0.95 7.95 -51.93 -0.41 0.54 16 33 H 0.05 0.86 8.14 -51.92 -0.42 0.43 16 34 H 0.03 0.47 7.18 -51.93 -0.37 0.09 16 35 H 0.06 1.25 6.95 -51.93 -0.36 0.89 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.12 1.75 6.73 -52.49 -0.35 1.40 16 40 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 326.94 15.07 4.93 4.93 Total: -1.00 -28.98 326.94 -9.31 -38.29 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -6.80 Total: 2.01 kcal Atomic # 6 Polarization: -21.61 SS G_CDS: -2.83 Total: -24.44 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.42 Total: -37.16 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.98 -9.31 -38.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602485510.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.183 kcal (2) G-P(sol) polarization free energy of solvation -28.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds