Wall clock time and date at job start Thu Apr 9 2020 12:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47204 * 2 1 4 4 C 1.38291 * 119.92195 * 270.27769 * 3 2 1 5 5 C 1.38103 * 120.07426 * 180.27995 * 4 3 2 6 6 C 1.38918 * 119.92232 * 359.43747 * 5 4 3 7 7 N 1.39672 * 120.07035 * 180.26003 * 6 5 4 8 8 C 1.46507 * 119.99644 * 179.97438 * 7 6 5 9 9 C 1.53003 * 109.47165 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.46991 * 54.99516 * 9 8 7 11 11 C 1.53003 * 109.46953 * 295.00519 * 9 8 7 12 12 C 1.52994 * 109.47246 * 175.00206 * 9 8 7 13 13 C 1.50699 * 109.47018 * 185.00029 * 12 9 8 14 14 H 1.08001 * 120.00410 * 359.97438 * 13 12 9 15 15 C 1.37881 * 119.99724 * 180.02562 * 13 12 9 16 16 N 1.31506 * 120.00100 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99793 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47235 * 60.00211 * 17 15 13 19 19 H 1.48501 * 109.47257 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47620 * 300.00038 * 17 15 13 21 21 C 1.38912 * 119.85053 * 0.28131 * 6 5 4 22 22 C 1.38103 * 119.92423 * 0.02562 * 21 6 5 23 23 H 1.08994 * 109.47374 * 300.00161 * 1 2 3 24 24 H 1.08995 * 109.46996 * 60.00791 * 1 2 3 25 25 H 1.09006 * 109.46864 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47809 * 239.99673 * 2 1 3 27 27 H 1.09008 * 109.47176 * 119.99352 * 2 1 3 28 28 H 1.08004 * 119.96541 * 359.97438 * 4 3 2 29 29 H 1.08002 * 120.04122 * 179.72165 * 5 4 3 30 30 H 0.97003 * 120.00570 * 0.02562 * 7 6 5 31 31 H 1.09001 * 109.47449 * 299.99961 * 8 7 6 32 32 H 1.08999 * 109.46663 * 60.00258 * 8 7 6 33 33 H 1.09010 * 109.46784 * 299.99360 * 11 9 8 34 34 H 1.08995 * 109.47463 * 59.99480 * 11 9 8 35 35 H 1.09003 * 109.47348 * 180.02562 * 11 9 8 36 36 H 1.08997 * 109.47273 * 305.00205 * 12 9 8 37 37 H 1.09002 * 109.46909 * 65.00095 * 12 9 8 38 38 H 0.97003 * 120.00153 * 180.02562 * 16 15 13 39 39 H 1.08001 * 120.03541 * 180.02562 * 21 6 5 40 40 H 1.07998 * 119.95667 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2568 2.0731 -1.1986 5 6 2.7226 3.3732 -1.2023 6 6 2.9546 4.0296 -0.0001 7 7 3.4206 5.3463 -0.0003 8 6 3.6641 6.0372 1.2685 9 6 4.1668 7.4550 0.9888 10 1 3.4572 7.9711 0.3421 11 6 5.5299 7.3857 0.2974 12 6 4.3023 8.2176 2.3083 13 6 4.6787 9.6490 2.0247 14 1 4.8087 9.9815 1.0055 15 6 4.8582 10.5339 3.0668 16 7 4.7004 10.1289 4.3079 17 14 5.3255 12.3080 2.7154 18 1 4.2713 12.9422 1.8837 19 1 5.4570 13.0483 3.9960 20 1 6.6191 12.3444 1.9871 21 6 2.7225 3.3733 1.2020 22 6 2.2627 2.0711 1.1984 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 2.0723 1.5636 -2.1328 29 1 2.9020 3.8806 -2.1386 30 1 3.5822 5.8036 -0.8403 31 1 2.7369 6.0861 1.8395 32 1 4.4149 5.4922 1.8406 33 1 6.2395 6.8696 0.9441 34 1 5.4333 6.8424 -0.6426 35 1 5.8882 8.3958 0.0985 36 1 3.3528 8.1906 2.8427 37 1 5.0763 7.7524 2.9188 38 1 4.8264 10.7516 5.0410 39 1 2.9015 3.8810 2.1383 40 1 2.0825 1.5602 2.1327 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602485510.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:21:45 Heat of formation + Delta-G solvation = -23.459214 kcal Electronic energy + Delta-G solvation = -17095.709326 eV Core-core repulsion = 14487.126622 eV Total energy + Delta-G solvation = -2608.582704 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.46624 -38.26104 -36.02757 -34.46514 -33.07423 -31.75030 -29.53824 -28.51700 -27.10681 -24.99665 -24.06108 -23.19894 -21.40509 -20.87127 -18.55810 -18.15280 -16.88323 -16.53856 -16.23513 -15.98814 -15.26019 -15.02055 -14.68019 -14.46541 -14.14287 -14.10747 -13.96434 -13.91298 -13.38943 -13.21297 -12.81194 -12.77961 -12.59271 -12.28641 -12.08901 -11.96674 -11.73174 -11.65467 -11.52653 -11.17748 -11.05564 -10.69303 -10.54718 -9.76251 -8.19024 -8.17144 -6.28490 0.60394 0.76626 1.40156 1.42424 1.50123 2.39943 2.60019 3.02414 3.14869 3.99170 4.05513 4.08395 4.15954 4.22009 4.33706 4.40058 4.60968 4.64926 4.70750 4.74745 4.77848 4.82870 4.90971 5.00968 5.15526 5.16455 5.20093 5.26533 5.29887 5.42951 5.45935 5.49459 5.52484 5.61806 5.74568 5.84517 5.90951 6.06616 6.25074 6.48673 6.86562 6.93304 7.39982 8.92945 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.054304 B = 0.003424 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.495941 B = 8176.462911 C = 8481.825446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.073 4.073 3 C -0.154 4.154 4 C -0.073 4.073 5 C -0.204 4.204 6 C 0.200 3.800 7 N -0.740 5.740 8 C 0.144 3.856 9 C -0.085 4.085 10 H 0.063 0.937 11 C -0.124 4.124 12 C 0.035 3.965 13 C -0.532 4.532 14 H 0.063 0.937 15 C -0.001 4.001 16 N -0.935 5.935 17 Si 0.961 3.039 18 H -0.268 1.268 19 H -0.286 1.286 20 H -0.267 1.267 21 C -0.218 4.218 22 C -0.077 4.077 23 H 0.045 0.955 24 H 0.051 0.949 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.140 0.860 29 H 0.132 0.868 30 H 0.403 0.597 31 H 0.044 0.956 32 H 0.049 0.951 33 H 0.040 0.960 34 H 0.063 0.937 35 H 0.049 0.951 36 H -0.010 1.010 37 H -0.007 1.007 38 H 0.262 0.738 39 H 0.110 0.890 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.249 -17.818 -11.114 21.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C -0.157 4.157 4 C -0.092 4.092 5 C -0.227 4.227 6 C 0.096 3.904 7 N -0.370 5.370 8 C 0.019 3.981 9 C -0.103 4.103 10 H 0.081 0.919 11 C -0.181 4.181 12 C -0.003 4.003 13 C -0.570 4.570 14 H 0.081 0.919 15 C -0.199 4.199 16 N -0.575 5.575 17 Si 0.786 3.214 18 H -0.193 1.193 19 H -0.211 1.211 20 H -0.192 1.192 21 C -0.241 4.241 22 C -0.096 4.096 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.087 0.913 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.158 0.842 29 H 0.149 0.851 30 H 0.239 0.761 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.008 0.992 37 H 0.012 0.988 38 H 0.071 0.929 39 H 0.128 0.872 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.207 -17.668 -10.744 21.324 hybrid contribution 0.350 1.480 0.282 1.547 sum -4.856 -16.188 -10.461 19.877 Atomic orbital electron populations 1.21751 0.94868 1.02005 1.01603 1.20423 0.96010 0.91529 1.03070 1.19905 1.05136 0.97889 0.92728 1.21006 0.96410 0.93480 0.98254 1.20791 1.09024 0.96805 0.96083 1.18118 0.92892 0.84882 0.94530 1.44744 1.72953 1.11219 1.08087 1.21204 0.98729 0.92290 0.85887 1.21202 0.97607 0.93281 0.98250 0.91895 1.21629 0.95896 1.01279 0.99328 1.18951 0.94792 0.94308 0.92252 1.21592 1.46406 0.95919 0.93037 0.91855 1.25944 0.95571 1.03470 0.94907 1.70087 1.51034 1.36973 0.99425 0.85562 0.79179 0.79277 0.77412 1.19278 1.21121 1.19164 1.20798 1.09733 0.97024 0.96508 1.20959 0.96767 0.93388 0.98461 0.93537 0.92964 0.91323 0.90378 0.91039 0.84192 0.85052 0.76072 0.93790 0.93302 0.94088 0.91765 0.93206 0.99210 0.98837 0.92884 0.87224 0.85306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.89 71.98 0.71 -1.39 16 2 C -0.07 -1.15 6.06 29.85 0.18 -0.96 16 3 C -0.15 -3.32 5.14 -19.84 -0.10 -3.42 16 4 C -0.07 -1.55 9.69 22.25 0.22 -1.33 16 5 C -0.20 -4.91 9.90 22.40 0.22 -4.69 16 6 C 0.20 5.68 6.65 38.22 0.25 5.93 16 7 N -0.74 -21.61 5.46 -339.39 -1.85 -23.47 16 8 C 0.14 4.97 4.30 86.38 0.37 5.34 16 9 C -0.08 -3.32 2.37 -10.79 -0.03 -3.35 16 10 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 11 C -0.12 -4.40 8.88 71.98 0.64 -3.76 16 12 C 0.03 1.78 4.45 29.85 0.13 1.91 16 13 C -0.53 -29.50 8.41 25.60 0.22 -29.28 16 14 H 0.06 3.34 7.06 -2.91 -0.02 3.32 16 15 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 16 N -0.93 -56.79 13.29 21.45 0.28 -56.50 16 17 Si 0.96 43.99 29.54 68.60 2.03 46.01 16 18 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 19 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 20 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 21 C -0.22 -6.28 9.31 22.40 0.21 -6.07 16 22 C -0.08 -1.89 9.69 22.25 0.22 -1.67 16 23 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 26 H 0.08 1.03 8.09 -2.39 -0.02 1.01 16 27 H 0.07 1.04 8.08 -2.38 -0.02 1.02 16 28 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 29 H 0.13 2.66 8.06 -2.91 -0.02 2.63 16 30 H 0.40 10.47 7.67 -92.71 -0.71 9.76 16 31 H 0.04 1.61 7.95 -2.39 -0.02 1.59 16 32 H 0.05 1.74 7.95 -2.39 -0.02 1.72 16 33 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 34 H 0.06 1.84 7.18 -2.39 -0.02 1.83 16 35 H 0.05 1.90 6.95 -2.39 -0.02 1.88 16 36 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 37 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 38 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 39 H 0.11 3.31 6.73 -2.91 -0.02 3.30 16 40 H 0.13 2.68 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -62.72 326.94 4.44 -58.27 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 0.28 Total: 18.05 kcal Atomic # 6 Polarization: -46.07 SS G_CDS: 3.70 Total: -42.36 kcal Atomic # 7 Polarization: -78.40 SS G_CDS: -1.57 Total: -79.97 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -62.72 4.44 -58.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602485510.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.814 kcal (2) G-P(sol) polarization free energy of solvation -62.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds