Wall clock time and date at job start Thu Apr 9 2020 12:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38281 * 119.96558 * 2 1 4 4 C 1.38285 * 120.15290 * 179.97438 * 3 2 1 5 5 C 1.50694 * 119.96338 * 179.97438 * 4 3 2 6 6 C 1.38105 * 120.07276 * 0.02562 * 4 3 2 7 7 C 1.38910 * 119.92393 * 0.02562 * 6 4 3 8 8 N 1.39683 * 120.07543 * 179.97438 * 7 6 4 9 9 C 1.46494 * 119.99893 * 179.97438 * 8 7 6 10 10 C 1.53005 * 109.46777 * 179.97438 * 9 8 7 11 11 H 1.08995 * 109.47448 * 304.99480 * 10 9 8 12 12 C 1.53001 * 109.47080 * 65.00298 * 10 9 8 13 13 C 1.53002 * 109.46893 * 184.99600 * 10 9 8 14 14 C 1.50706 * 109.47153 * 174.99718 * 13 10 9 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 10 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47364 * 179.72558 * 18 16 14 20 20 H 1.48508 * 109.46883 * 299.72681 * 18 16 14 21 21 H 1.48497 * 109.46870 * 59.72491 * 18 16 14 22 22 C 1.38105 * 119.96045 * 180.25877 * 2 1 3 23 23 H 1.08998 * 109.46935 * 89.99620 * 1 2 3 24 24 H 1.08995 * 109.46944 * 210.00036 * 1 2 3 25 25 H 1.09003 * 109.46794 * 329.99888 * 1 2 3 26 26 H 1.08006 * 119.92412 * 359.97438 * 3 2 1 27 27 H 1.08997 * 109.47485 * 270.02455 * 5 4 3 28 28 H 1.08998 * 109.47257 * 30.02877 * 5 4 3 29 29 H 1.09005 * 109.46723 * 150.02547 * 5 4 3 30 30 H 1.07998 * 120.04121 * 179.97438 * 6 4 3 31 31 H 0.96998 * 119.99284 * 359.97438 * 8 7 6 32 32 H 1.08997 * 109.47647 * 59.99800 * 9 8 7 33 33 H 1.09001 * 109.47420 * 299.99319 * 9 8 7 34 34 H 1.09000 * 109.46932 * 180.02562 * 12 10 9 35 35 H 1.09001 * 109.46866 * 299.99538 * 12 10 9 36 36 H 1.09000 * 109.47309 * 59.99633 * 12 10 9 37 37 H 1.09004 * 109.47178 * 55.00508 * 13 10 9 38 38 H 1.08993 * 109.47411 * 295.00191 * 13 10 9 39 39 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 40 40 H 1.08007 * 120.03981 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1980 0.0000 4 6 3.5806 1.2025 0.0005 5 6 4.3289 2.5105 -0.0001 6 6 4.2765 0.0096 0.0005 7 6 3.5858 -1.1956 -0.0005 8 7 4.2865 -2.4040 -0.0011 9 6 3.5565 -3.6740 -0.0016 10 6 4.5530 -4.8350 -0.0028 11 1 5.2365 -4.7264 -0.8448 12 6 5.3482 -4.8259 1.3043 13 6 3.7946 -6.1579 -0.1290 14 6 4.7795 -7.2917 -0.2538 15 1 5.8403 -7.0890 -0.2436 16 6 4.3265 -8.5876 -0.3809 17 7 3.0349 -8.8350 -0.3879 18 14 5.5474 -9.9931 -0.5348 19 1 4.8114 -11.2776 -0.6514 20 1 6.3850 -9.7909 -1.7443 21 1 6.4163 -10.0279 0.6689 22 6 2.1967 -1.1965 -0.0054 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6559 2.1323 -0.0004 27 1 4.5094 2.8254 -1.0278 28 1 3.7369 3.2680 0.5135 29 1 5.2819 2.3840 0.5139 30 1 5.3565 0.0137 0.0005 31 1 5.2565 -2.4020 -0.0011 32 1 2.9299 -3.7326 -0.8916 33 1 2.9300 -3.7334 0.8884 34 1 6.0584 -5.6528 1.3032 35 1 5.8885 -3.8835 1.3942 36 1 4.6646 -4.9346 2.1463 37 1 3.1594 -6.1295 -1.0144 38 1 3.1772 -6.3087 0.7564 39 1 2.4008 -8.1053 -0.3078 40 1 1.6567 -2.1318 -0.0100 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602485535.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:21:54 Heat of formation + Delta-G solvation = -14.147579 kcal Electronic energy + Delta-G solvation = -17282.217869 eV Core-core repulsion = 14674.038948 eV Total energy + Delta-G solvation = -2608.178921 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.56723 -36.93383 -34.39558 -33.44178 -32.30070 -29.64808 -27.19654 -26.86200 -26.54095 -25.43738 -22.85806 -21.19107 -20.47878 -19.39128 -16.83496 -16.50096 -16.07745 -15.38832 -14.71076 -14.09509 -13.93138 -13.82504 -13.60413 -13.24792 -13.20176 -12.91219 -12.77447 -12.53618 -12.01666 -11.83224 -11.77252 -11.46444 -11.23380 -11.14569 -10.82789 -10.77697 -10.39862 -10.13317 -10.06166 -9.64551 -9.57565 -8.55553 -8.46195 -8.34810 -7.18673 -6.37352 -4.06540 1.51455 1.76812 3.42435 3.44088 3.62768 3.70248 3.94805 4.53221 4.84300 4.86593 5.24309 5.31365 5.35959 5.38369 5.44113 5.50598 5.51404 5.58451 5.61120 5.70115 5.75772 5.81136 5.85789 6.02307 6.11366 6.17729 6.28862 6.32202 6.49681 6.65930 6.71887 6.81375 6.85348 6.93628 7.05096 7.31188 7.47078 7.58515 7.96719 8.18593 8.43914 8.86596 9.65061 11.03114 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.039160 B = 0.003865 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.842645 B = 7242.283179 C = 7810.385214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.037 4.037 3 C -0.190 4.190 4 C -0.040 4.040 5 C -0.112 4.112 6 C -0.210 4.210 7 C 0.231 3.769 8 N -0.741 5.741 9 C 0.126 3.874 10 C -0.089 4.089 11 H 0.063 0.937 12 C -0.131 4.131 13 C 0.017 3.983 14 C -0.597 4.597 15 H 0.050 0.950 16 C 0.014 3.986 17 N -0.913 5.913 18 Si 1.067 2.933 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.288 1.288 22 C -0.206 4.206 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.112 0.888 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.115 0.885 31 H 0.397 0.603 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.032 0.968 36 H 0.045 0.955 37 H 0.008 0.992 38 H 0.009 0.991 39 H 0.268 0.732 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.205 19.518 1.282 19.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.038 4.038 3 C -0.210 4.210 4 C -0.040 4.040 5 C -0.169 4.169 6 C -0.233 4.233 7 C 0.125 3.875 8 N -0.368 5.368 9 C 0.003 3.997 10 C -0.108 4.108 11 H 0.081 0.919 12 C -0.188 4.188 13 C -0.020 4.020 14 C -0.636 4.636 15 H 0.068 0.932 16 C -0.190 4.190 17 N -0.549 5.549 18 Si 0.896 3.104 19 H -0.208 1.208 20 H -0.215 1.215 21 H -0.215 1.215 22 C -0.229 4.229 23 H 0.087 0.913 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.130 0.870 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.133 0.867 31 H 0.232 0.768 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.051 0.949 36 H 0.064 0.936 37 H 0.026 0.974 38 H 0.028 0.972 39 H 0.079 0.921 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.209 17.664 1.124 17.701 hybrid contribution 0.285 1.595 0.149 1.627 sum 0.076 19.259 1.273 19.301 Atomic orbital electron populations 1.20792 0.91613 1.02506 1.02177 1.19605 0.95454 0.92631 0.96093 1.20530 0.93274 0.97003 1.10237 1.19537 0.93608 0.94322 0.96565 1.20770 0.99784 0.94304 1.02046 1.20383 0.99034 0.90772 1.13104 1.17865 0.91486 0.86105 0.92031 1.44969 1.08191 1.02814 1.80863 1.21607 0.95379 0.82358 1.00398 1.21299 0.96743 0.94916 0.97849 0.91860 1.21708 1.00058 0.99950 0.97109 1.19204 0.95791 0.90999 0.96047 1.21996 0.93627 0.93033 1.54913 0.93197 1.25830 0.99237 0.99947 0.93948 1.70785 1.01527 1.36080 1.46557 0.83562 0.74554 0.75837 0.76472 1.20777 1.21482 1.21469 1.20534 0.92221 0.98102 1.12005 0.91251 0.91597 0.91755 0.86966 0.91360 0.91758 0.91802 0.86701 0.76801 0.92730 0.92742 0.91644 0.94937 0.93559 0.97403 0.97239 0.92120 0.86198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.01 36.01 0.36 -0.81 16 2 C -0.04 -0.48 5.88 -104.65 -0.62 -1.10 16 3 C -0.19 -2.34 9.35 -39.55 -0.37 -2.71 16 4 C -0.04 -0.49 5.88 -104.66 -0.62 -1.10 16 5 C -0.11 -1.02 10.01 36.00 0.36 -0.66 16 6 C -0.21 -2.82 9.55 -39.38 -0.38 -3.20 16 7 C 0.23 3.45 6.65 -83.78 -0.56 2.89 16 8 N -0.74 -11.24 5.46 -58.63 -0.32 -11.57 16 9 C 0.13 2.17 4.30 -4.04 -0.02 2.15 16 10 C -0.09 -1.76 2.37 -90.62 -0.22 -1.98 16 11 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 12 C -0.13 -2.42 8.88 37.16 0.33 -2.09 16 13 C 0.02 0.42 3.76 -27.88 -0.10 0.32 16 14 C -0.60 -16.61 8.41 -34.44 -0.29 -16.90 16 15 H 0.05 1.36 7.06 -52.49 -0.37 0.99 16 16 C 0.01 0.40 5.46 -17.82 -0.10 0.31 16 17 N -0.91 -27.85 13.65 55.43 0.76 -27.10 16 18 Si 1.07 25.15 29.90 -169.99 -5.08 20.07 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 22 C -0.21 -3.04 8.96 -39.38 -0.35 -3.39 16 23 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 25 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 26 H 0.11 1.15 8.06 -52.48 -0.42 0.73 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 29 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 30 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.40 5.57 7.67 -40.82 -0.31 5.25 16 32 H 0.05 0.96 7.94 -51.93 -0.41 0.55 16 33 H 0.05 0.95 7.96 -51.93 -0.41 0.53 16 34 H 0.06 1.31 6.95 -51.93 -0.36 0.95 16 35 H 0.03 0.50 7.18 -51.93 -0.37 0.13 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.01 0.20 8.01 -51.93 -0.42 -0.21 16 38 H 0.01 0.24 8.00 -51.93 -0.42 -0.17 16 39 H 0.27 8.14 7.22 -40.82 -0.29 7.84 16 40 H 0.12 1.78 6.73 -52.48 -0.35 1.43 16 LS Contribution 325.55 15.07 4.91 4.91 Total: -1.00 -30.16 325.55 -9.03 -39.20 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -6.73 Total: 2.76 kcal Atomic # 6 Polarization: -25.71 SS G_CDS: -2.56 Total: -28.27 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.44 Total: -38.66 kcal Atomic # 14 Polarization: 25.15 SS G_CDS: -5.08 Total: 20.07 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.16 -9.03 -39.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602485535.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.051 kcal (2) G-P(sol) polarization free energy of solvation -30.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds