Wall clock time and date at job start Thu Apr 9 2020 12:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38281 * 119.96558 * 2 1 4 4 C 1.38285 * 120.15290 * 179.97438 * 3 2 1 5 5 C 1.50694 * 119.96338 * 179.97438 * 4 3 2 6 6 C 1.38105 * 120.07276 * 0.02562 * 4 3 2 7 7 C 1.38910 * 119.92393 * 0.02562 * 6 4 3 8 8 N 1.39683 * 120.07543 * 179.97438 * 7 6 4 9 9 C 1.46494 * 119.99893 * 179.97438 * 8 7 6 10 10 C 1.53005 * 109.46777 * 179.97438 * 9 8 7 11 11 H 1.08995 * 109.47448 * 304.99480 * 10 9 8 12 12 C 1.53001 * 109.47080 * 65.00298 * 10 9 8 13 13 C 1.53002 * 109.46893 * 184.99600 * 10 9 8 14 14 C 1.50706 * 109.47153 * 174.99718 * 13 10 9 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 10 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47364 * 179.72558 * 18 16 14 20 20 H 1.48508 * 109.46883 * 299.72681 * 18 16 14 21 21 H 1.48497 * 109.46870 * 59.72491 * 18 16 14 22 22 C 1.38105 * 119.96045 * 180.25877 * 2 1 3 23 23 H 1.08998 * 109.46935 * 89.99620 * 1 2 3 24 24 H 1.08995 * 109.46944 * 210.00036 * 1 2 3 25 25 H 1.09003 * 109.46794 * 329.99888 * 1 2 3 26 26 H 1.08006 * 119.92412 * 359.97438 * 3 2 1 27 27 H 1.08997 * 109.47485 * 270.02455 * 5 4 3 28 28 H 1.08998 * 109.47257 * 30.02877 * 5 4 3 29 29 H 1.09005 * 109.46723 * 150.02547 * 5 4 3 30 30 H 1.07998 * 120.04121 * 179.97438 * 6 4 3 31 31 H 0.96998 * 119.99284 * 359.97438 * 8 7 6 32 32 H 1.08997 * 109.47647 * 59.99800 * 9 8 7 33 33 H 1.09001 * 109.47420 * 299.99319 * 9 8 7 34 34 H 1.09000 * 109.46932 * 180.02562 * 12 10 9 35 35 H 1.09001 * 109.46866 * 299.99538 * 12 10 9 36 36 H 1.09000 * 109.47309 * 59.99633 * 12 10 9 37 37 H 1.09004 * 109.47178 * 55.00508 * 13 10 9 38 38 H 1.08993 * 109.47411 * 295.00191 * 13 10 9 39 39 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 40 40 H 1.08007 * 120.03981 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1980 0.0000 4 6 3.5806 1.2025 0.0005 5 6 4.3289 2.5105 -0.0001 6 6 4.2765 0.0096 0.0005 7 6 3.5858 -1.1956 -0.0005 8 7 4.2865 -2.4040 -0.0011 9 6 3.5565 -3.6740 -0.0016 10 6 4.5530 -4.8350 -0.0028 11 1 5.2365 -4.7264 -0.8448 12 6 5.3482 -4.8259 1.3043 13 6 3.7946 -6.1579 -0.1290 14 6 4.7795 -7.2917 -0.2538 15 1 5.8403 -7.0890 -0.2436 16 6 4.3265 -8.5876 -0.3809 17 7 3.0349 -8.8350 -0.3879 18 14 5.5474 -9.9931 -0.5348 19 1 4.8114 -11.2776 -0.6514 20 1 6.3850 -9.7909 -1.7443 21 1 6.4163 -10.0279 0.6689 22 6 2.1967 -1.1965 -0.0054 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6559 2.1323 -0.0004 27 1 4.5094 2.8254 -1.0278 28 1 3.7369 3.2680 0.5135 29 1 5.2819 2.3840 0.5139 30 1 5.3565 0.0137 0.0005 31 1 5.2565 -2.4020 -0.0011 32 1 2.9299 -3.7326 -0.8916 33 1 2.9300 -3.7334 0.8884 34 1 6.0584 -5.6528 1.3032 35 1 5.8885 -3.8835 1.3942 36 1 4.6646 -4.9346 2.1463 37 1 3.1594 -6.1295 -1.0144 38 1 3.1772 -6.3087 0.7564 39 1 2.4008 -8.1053 -0.3078 40 1 1.6567 -2.1318 -0.0100 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602485535.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:21:53 Heat of formation + Delta-G solvation = -29.715914 kcal Electronic energy + Delta-G solvation = -17282.892963 eV Core-core repulsion = 14674.038948 eV Total energy + Delta-G solvation = -2608.854015 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.61281 -38.38889 -36.00174 -34.34373 -34.14216 -30.85636 -28.50968 -28.12254 -27.75974 -26.83513 -24.80102 -22.25741 -21.70522 -20.83197 -18.91126 -17.66050 -17.18525 -16.53115 -16.16894 -15.67369 -15.46149 -15.12439 -14.95407 -14.36135 -14.30061 -13.97789 -13.84589 -13.67721 -13.50249 -13.27455 -13.02116 -12.77374 -12.66797 -12.48780 -12.20478 -12.02912 -11.96312 -11.79491 -11.75881 -11.44054 -10.72852 -10.64049 -10.54137 -9.44961 -8.67160 -8.31885 -6.37030 0.50763 0.73684 1.52218 1.60453 1.79299 2.46838 2.58469 2.93165 3.17063 3.87413 3.95858 3.98358 4.02496 4.21183 4.30769 4.43212 4.55850 4.57577 4.61364 4.67707 4.73188 4.77347 4.81121 4.88659 4.91522 4.97334 5.07813 5.12689 5.17695 5.24747 5.29911 5.35831 5.48628 5.54517 5.70131 5.83130 5.97999 6.05190 6.19594 6.42175 6.59192 6.84651 7.44067 8.73694 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.039160 B = 0.003865 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.842645 B = 7242.283179 C = 7810.385214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.045 4.045 3 C -0.193 4.193 4 C -0.043 4.043 5 C -0.110 4.110 6 C -0.218 4.218 7 C 0.211 3.789 8 N -0.740 5.740 9 C 0.145 3.855 10 C -0.079 4.079 11 H 0.062 0.938 12 C -0.123 4.123 13 C 0.018 3.982 14 C -0.607 4.607 15 H 0.055 0.945 16 C -0.042 4.042 17 N -0.941 5.941 18 Si 1.116 2.884 19 H -0.286 1.286 20 H -0.269 1.269 21 H -0.268 1.268 22 C -0.231 4.231 23 H 0.077 0.923 24 H 0.062 0.938 25 H 0.083 0.917 26 H 0.136 0.864 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.129 0.871 31 H 0.403 0.597 32 H 0.043 0.957 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.065 0.935 36 H 0.040 0.960 37 H -0.014 1.014 38 H -0.010 1.010 39 H 0.255 0.745 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.062 21.533 1.437 21.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.046 4.046 3 C -0.213 4.213 4 C -0.044 4.044 5 C -0.167 4.167 6 C -0.241 4.241 7 C 0.107 3.893 8 N -0.369 5.369 9 C 0.020 3.980 10 C -0.098 4.098 11 H 0.080 0.920 12 C -0.181 4.181 13 C -0.019 4.019 14 C -0.645 4.645 15 H 0.073 0.927 16 C -0.239 4.239 17 N -0.579 5.579 18 Si 0.937 3.063 19 H -0.211 1.211 20 H -0.194 1.194 21 H -0.193 1.193 22 C -0.254 4.254 23 H 0.096 0.904 24 H 0.081 0.919 25 H 0.102 0.898 26 H 0.154 0.846 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.146 0.854 31 H 0.239 0.761 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.059 0.941 37 H 0.004 0.996 38 H 0.008 0.992 39 H 0.064 0.936 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.062 19.731 1.283 19.801 hybrid contribution -0.161 1.093 0.094 1.108 sum 0.901 20.823 1.377 20.888 Atomic orbital electron populations 1.20837 0.89880 1.03320 1.02936 1.19956 0.96937 0.92366 0.95353 1.20897 0.93653 0.97604 1.09112 1.19982 0.93973 0.95346 0.95067 1.20826 0.99987 0.92786 1.03082 1.20624 0.99876 0.90586 1.12971 1.18068 0.91714 0.86343 0.93179 1.44712 1.08286 1.02116 1.81820 1.21185 0.94461 0.82657 0.99694 1.21092 0.96734 0.93223 0.98733 0.91978 1.21617 0.99519 1.01082 0.95837 1.19129 0.95318 0.93421 0.94043 1.22412 0.94363 0.93941 1.53773 0.92685 1.27395 1.00002 1.03348 0.93122 1.70918 1.02425 1.35591 1.48954 0.82950 0.72848 0.72536 0.77951 1.21145 1.19443 1.19349 1.20653 0.92568 0.98515 1.13650 0.90432 0.91929 0.89821 0.84579 0.90256 0.90261 0.90997 0.85351 0.76069 0.93839 0.93298 0.93248 0.91587 0.94080 0.99578 0.99168 0.93602 0.87451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.17 10.01 71.24 0.71 -1.45 16 2 C -0.05 -1.14 5.88 -19.88 -0.12 -1.25 16 3 C -0.19 -4.29 9.35 22.29 0.21 -4.09 16 4 C -0.04 -0.95 5.88 -19.89 -0.12 -1.07 16 5 C -0.11 -1.63 10.01 71.23 0.71 -0.92 16 6 C -0.22 -5.50 9.55 22.40 0.21 -5.29 16 7 C 0.21 6.20 6.65 38.21 0.25 6.45 16 8 N -0.74 -22.13 5.46 -339.42 -1.85 -23.99 16 9 C 0.14 5.07 4.30 86.38 0.37 5.44 16 10 C -0.08 -3.15 2.37 -10.79 -0.03 -3.18 16 11 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 12 C -0.12 -4.47 8.88 71.98 0.64 -3.83 16 13 C 0.02 0.95 3.76 29.85 0.11 1.06 16 14 C -0.61 -34.18 8.41 25.60 0.22 -33.96 16 15 H 0.05 2.99 7.06 -2.91 -0.02 2.97 16 16 C -0.04 -2.42 5.46 84.65 0.46 -1.96 16 17 N -0.94 -58.87 13.65 21.45 0.29 -58.58 16 18 Si 1.12 50.27 29.90 68.60 2.05 52.32 16 19 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 20 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 21 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 22 C -0.23 -6.85 8.96 22.40 0.20 -6.65 16 23 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.06 1.22 8.09 -2.39 -0.02 1.20 16 25 H 0.08 1.26 8.09 -2.39 -0.02 1.24 16 26 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 27 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.08 0.95 8.08 -2.39 -0.02 0.93 16 29 H 0.07 0.96 8.08 -2.38 -0.02 0.94 16 30 H 0.13 2.79 8.06 -2.91 -0.02 2.77 16 31 H 0.40 10.80 7.67 -92.71 -0.71 10.09 16 32 H 0.04 1.60 7.94 -2.39 -0.02 1.58 16 33 H 0.05 1.75 7.96 -2.39 -0.02 1.74 16 34 H 0.05 1.93 6.95 -2.39 -0.02 1.92 16 35 H 0.07 1.94 7.18 -2.39 -0.02 1.92 16 36 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 37 H -0.01 -0.78 8.01 -2.39 -0.02 -0.80 16 38 H -0.01 -0.55 8.00 -2.39 -0.02 -0.57 16 39 H 0.25 16.13 7.22 -92.71 -0.67 15.46 16 40 H 0.11 3.34 6.73 -2.91 -0.02 3.32 16 Total: -1.00 -65.56 325.55 4.72 -60.84 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.39 Total: 20.10 kcal Atomic # 6 Polarization: -54.54 SS G_CDS: 3.84 Total: -50.69 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -1.56 Total: -82.57 kcal Atomic # 14 Polarization: 50.27 SS G_CDS: 2.05 Total: 52.32 kcal Total: -65.56 4.72 -60.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602485535.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.123 kcal (2) G-P(sol) polarization free energy of solvation -65.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds