Wall clock time and date at job start Thu Apr 9 2020 12:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38305 * 119.96147 * 2 1 4 4 C 1.38272 * 120.15166 * 179.97438 * 3 2 1 5 5 C 1.38120 * 120.07164 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.03881 * 179.97438 * 5 4 3 7 7 C 1.38894 * 119.92929 * 359.97438 * 5 4 3 8 8 N 1.39668 * 120.07956 * 179.97438 * 7 5 4 9 9 C 1.46495 * 120.00232 * 179.97438 * 8 7 5 10 10 C 1.53006 * 109.47168 * 180.02562 * 9 8 7 11 11 H 1.08993 * 109.46955 * 55.00154 * 10 9 8 12 12 C 1.52999 * 109.46626 * 294.99682 * 10 9 8 13 13 C 1.52997 * 109.47127 * 175.00143 * 10 9 8 14 14 C 1.50701 * 109.47348 * 184.99767 * 13 10 9 15 15 H 1.07998 * 119.99454 * 359.97438 * 14 13 10 16 16 C 1.37874 * 120.00255 * 179.97438 * 14 13 10 17 17 N 1.31519 * 119.99765 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 120.00010 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47147 * 89.99766 * 18 16 14 20 20 H 1.48500 * 109.47042 * 209.99738 * 18 16 14 21 21 H 1.48505 * 109.46930 * 329.99657 * 18 16 14 22 22 C 1.38084 * 119.96328 * 180.23504 * 2 1 3 23 23 H 1.09006 * 109.47162 * 90.00140 * 1 2 3 24 24 H 1.09003 * 109.46821 * 210.00087 * 1 2 3 25 25 H 1.08998 * 109.47433 * 329.99714 * 1 2 3 26 26 H 1.08000 * 119.92408 * 359.95530 * 3 2 1 27 27 H 1.07999 * 119.96118 * 180.02562 * 4 3 2 28 28 H 1.09000 * 109.46723 * 270.02417 * 6 5 4 29 29 H 1.09001 * 109.47049 * 30.01838 * 6 5 4 30 30 H 1.08992 * 109.47374 * 150.02135 * 6 5 4 31 31 H 0.97003 * 119.99631 * 359.97438 * 8 7 5 32 32 H 1.09000 * 109.47236 * 59.99764 * 9 8 7 33 33 H 1.09007 * 109.47365 * 299.99811 * 9 8 7 34 34 H 1.09000 * 109.47160 * 60.00369 * 12 10 9 35 35 H 1.09002 * 109.46719 * 180.02562 * 12 10 9 36 36 H 1.08993 * 109.47839 * 299.99931 * 12 10 9 37 37 H 1.09002 * 109.47196 * 304.99671 * 13 10 9 38 38 H 1.09001 * 109.47630 * 64.99767 * 13 10 9 39 39 H 0.97000 * 119.99505 * 179.97438 * 17 16 14 40 40 H 1.07999 * 120.03930 * 0.04061 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1982 0.0000 4 6 3.5804 1.2028 0.0005 5 6 4.2765 0.0098 0.0005 6 6 5.7835 0.0157 0.0005 7 6 3.5860 -1.1953 0.0005 8 7 4.2867 -2.4035 0.0000 9 6 3.5568 -3.6737 0.0006 10 6 4.5534 -4.8347 0.0004 11 1 5.2375 -4.7263 0.8419 12 6 5.3475 -4.8248 -1.3073 13 6 3.7952 -6.1576 0.1267 14 6 4.7803 -7.2914 0.2501 15 1 5.8410 -7.0886 0.2390 16 6 4.3274 -8.5874 0.3770 17 7 5.1872 -9.5769 0.4841 18 14 2.4927 -8.9381 0.3954 19 1 2.0195 -9.1719 -0.9927 20 1 2.2277 -10.1453 1.2186 21 1 1.7724 -7.7759 0.9748 22 6 2.1967 -1.1963 -0.0049 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8899 0.5139 26 1 1.6559 2.1324 -0.0007 27 1 4.1167 2.1403 0.0010 28 1 6.1468 0.0175 -1.0272 29 1 6.1434 0.9069 0.5147 30 1 6.1503 -0.8730 0.5140 31 1 5.2568 -2.4016 -0.0008 32 1 2.9295 -3.7327 -0.8889 33 1 2.9309 -3.7327 0.8911 34 1 5.8876 -3.8824 -1.3973 35 1 6.0571 -5.6522 -1.3076 36 1 4.6633 -4.9333 -2.1488 37 1 3.1607 -6.1296 1.0126 38 1 3.1770 -6.3081 -0.7583 39 1 4.8685 -10.4886 0.5738 40 1 1.6567 -2.1316 -0.0094 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602489749.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:21:57 Heat of formation + Delta-G solvation = -4.159852 kcal Electronic energy + Delta-G solvation = -17512.145933 eV Core-core repulsion = 14904.400112 eV Total energy + Delta-G solvation = -2607.745821 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.67380 -36.84633 -34.46320 -33.23357 -32.02889 -29.38434 -29.05328 -27.41382 -25.99083 -24.66013 -22.88001 -21.25206 -20.70632 -19.15752 -16.98954 -16.47964 -15.93999 -15.22915 -14.79379 -14.32384 -14.03752 -13.91107 -13.66976 -13.29677 -13.06227 -12.77240 -12.64260 -12.59478 -12.25883 -11.92910 -11.82171 -11.52647 -11.15694 -11.10114 -10.91759 -10.82432 -10.53832 -10.06009 -9.80650 -9.71602 -9.60259 -9.15138 -8.56793 -8.46841 -7.14960 -6.07140 -4.05126 1.49713 1.77100 3.28487 3.36411 3.39207 3.70279 3.93840 4.42455 4.87378 4.91396 5.14812 5.22043 5.26060 5.33913 5.40355 5.55928 5.57335 5.59462 5.64200 5.71408 5.77799 5.82035 5.89115 6.01106 6.09897 6.22588 6.28939 6.31658 6.47433 6.61646 6.68425 6.79030 6.80951 6.97438 7.04982 7.18191 7.34775 7.56021 7.75741 7.95754 8.50160 8.97108 9.55154 11.06091 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.029343 B = 0.004656 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.012235 B = 6012.275139 C = 6827.583253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.045 4.045 3 C -0.188 4.188 4 C -0.071 4.071 5 C -0.177 4.177 6 C -0.103 4.103 7 C 0.229 3.771 8 N -0.740 5.740 9 C 0.124 3.876 10 C -0.087 4.087 11 H 0.068 0.932 12 C -0.134 4.134 13 C -0.006 4.006 14 C -0.517 4.517 15 H 0.074 0.926 16 C 0.067 3.933 17 N -0.903 5.903 18 Si 0.878 3.122 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.266 1.266 22 C -0.198 4.198 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.112 0.888 27 H 0.115 0.885 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.398 0.602 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.032 0.968 35 H 0.069 0.931 36 H 0.046 0.954 37 H 0.017 0.983 38 H 0.014 0.986 39 H 0.263 0.737 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.076 20.156 -1.558 20.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.046 4.046 3 C -0.208 4.208 4 C -0.090 4.090 5 C -0.182 4.182 6 C -0.160 4.160 7 C 0.123 3.877 8 N -0.368 5.368 9 C 0.000 4.000 10 C -0.106 4.106 11 H 0.086 0.914 12 C -0.191 4.191 13 C -0.044 4.044 14 C -0.554 4.554 15 H 0.092 0.908 16 C -0.135 4.135 17 N -0.542 5.542 18 Si 0.705 3.295 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.190 1.190 22 C -0.221 4.221 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.130 0.870 27 H 0.133 0.867 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.235 0.765 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.088 0.912 36 H 0.065 0.935 37 H 0.035 0.965 38 H 0.032 0.968 39 H 0.073 0.927 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.174 19.748 -1.536 20.473 hybrid contribution -0.583 -0.417 0.013 0.717 sum -5.758 19.331 -1.523 20.228 Atomic orbital electron populations 1.20785 0.91710 1.02465 1.02087 1.19605 0.95428 0.92710 0.96845 1.20650 0.93979 0.96963 1.09194 1.20680 0.93925 0.96481 0.97870 1.19327 0.95593 0.91847 1.11395 1.20561 0.91683 1.02107 1.01673 1.17706 0.91292 0.85868 0.92836 1.45030 1.08374 1.02706 1.80731 1.21635 0.95426 0.82514 1.00452 1.21242 0.96718 0.94364 0.98293 0.91404 1.21730 1.00210 1.00274 0.96872 1.19564 0.96231 0.92213 0.96374 1.21083 0.94359 0.89908 1.50098 0.90835 1.25017 0.97528 0.96293 0.94622 1.69912 1.34073 0.99624 1.50614 0.86806 0.86353 0.77953 0.78340 1.20304 1.21400 1.19033 1.20524 0.92110 0.98095 1.11408 0.91346 0.91677 0.91785 0.86966 0.86656 0.91897 0.91858 0.92270 0.76512 0.92662 0.92665 0.94883 0.91227 0.93511 0.96477 0.96807 0.92735 0.86152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.01 36.01 0.36 -0.75 16 2 C -0.05 -0.56 5.88 -104.65 -0.62 -1.18 16 3 C -0.19 -2.22 9.70 -39.54 -0.38 -2.60 16 4 C -0.07 -0.84 9.70 -39.61 -0.38 -1.22 16 5 C -0.18 -2.28 5.90 -104.42 -0.62 -2.89 16 6 C -0.10 -1.10 9.57 36.01 0.34 -0.75 16 7 C 0.23 3.28 6.63 -83.79 -0.56 2.72 16 8 N -0.74 -10.72 5.36 -58.63 -0.31 -11.03 16 9 C 0.12 1.98 4.30 -4.04 -0.02 1.97 16 10 C -0.09 -1.63 2.37 -90.62 -0.22 -1.85 16 11 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 12 C -0.13 -2.38 8.88 37.16 0.33 -2.05 16 13 C -0.01 -0.14 3.52 -27.88 -0.10 -0.24 16 14 C -0.52 -14.24 8.96 -34.44 -0.31 -14.55 16 15 H 0.07 2.17 7.30 -52.49 -0.38 1.79 16 16 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 17 N -0.90 -27.52 13.96 55.43 0.77 -26.74 16 18 Si 0.88 21.45 27.47 -169.99 -4.67 16.78 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 22 C -0.20 -2.79 8.96 -39.38 -0.35 -3.15 16 23 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 25 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 26 H 0.11 1.09 8.06 -52.49 -0.42 0.67 16 27 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 30 H 0.06 0.63 6.55 -51.93 -0.34 0.29 16 31 H 0.40 5.41 5.65 -40.82 -0.23 5.17 16 32 H 0.06 0.88 7.94 -51.93 -0.41 0.47 16 33 H 0.06 0.90 7.96 -51.93 -0.41 0.48 16 34 H 0.03 0.50 7.18 -51.93 -0.37 0.12 16 35 H 0.07 1.39 6.95 -51.93 -0.36 1.03 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 38 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 39 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.12 1.68 6.74 -52.49 -0.35 1.32 16 LS Contribution 319.66 15.07 4.82 4.82 Total: -1.00 -29.75 319.66 -8.60 -38.35 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -6.60 Total: 2.55 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: -2.61 Total: -24.72 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.46 Total: -37.78 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.75 -8.60 -38.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602489749.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.192 kcal (2) G-P(sol) polarization free energy of solvation -29.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds