Wall clock time and date at job start Thu Apr 9 2020 12:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38305 * 119.96147 * 2 1 4 4 C 1.38272 * 120.15166 * 179.97438 * 3 2 1 5 5 C 1.38120 * 120.07164 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.03881 * 179.97438 * 5 4 3 7 7 C 1.38894 * 119.92929 * 359.97438 * 5 4 3 8 8 N 1.39668 * 120.07956 * 179.97438 * 7 5 4 9 9 C 1.46495 * 120.00232 * 179.97438 * 8 7 5 10 10 C 1.53006 * 109.47168 * 180.02562 * 9 8 7 11 11 H 1.08993 * 109.46955 * 55.00154 * 10 9 8 12 12 C 1.52999 * 109.46626 * 294.99682 * 10 9 8 13 13 C 1.52997 * 109.47127 * 175.00143 * 10 9 8 14 14 C 1.50701 * 109.47348 * 184.99767 * 13 10 9 15 15 H 1.07998 * 119.99454 * 359.97438 * 14 13 10 16 16 C 1.37874 * 120.00255 * 179.97438 * 14 13 10 17 17 N 1.31519 * 119.99765 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 120.00010 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47147 * 89.99766 * 18 16 14 20 20 H 1.48500 * 109.47042 * 209.99738 * 18 16 14 21 21 H 1.48505 * 109.46930 * 329.99657 * 18 16 14 22 22 C 1.38084 * 119.96328 * 180.23504 * 2 1 3 23 23 H 1.09006 * 109.47162 * 90.00140 * 1 2 3 24 24 H 1.09003 * 109.46821 * 210.00087 * 1 2 3 25 25 H 1.08998 * 109.47433 * 329.99714 * 1 2 3 26 26 H 1.08000 * 119.92408 * 359.95530 * 3 2 1 27 27 H 1.07999 * 119.96118 * 180.02562 * 4 3 2 28 28 H 1.09000 * 109.46723 * 270.02417 * 6 5 4 29 29 H 1.09001 * 109.47049 * 30.01838 * 6 5 4 30 30 H 1.08992 * 109.47374 * 150.02135 * 6 5 4 31 31 H 0.97003 * 119.99631 * 359.97438 * 8 7 5 32 32 H 1.09000 * 109.47236 * 59.99764 * 9 8 7 33 33 H 1.09007 * 109.47365 * 299.99811 * 9 8 7 34 34 H 1.09000 * 109.47160 * 60.00369 * 12 10 9 35 35 H 1.09002 * 109.46719 * 180.02562 * 12 10 9 36 36 H 1.08993 * 109.47839 * 299.99931 * 12 10 9 37 37 H 1.09002 * 109.47196 * 304.99671 * 13 10 9 38 38 H 1.09001 * 109.47630 * 64.99767 * 13 10 9 39 39 H 0.97000 * 119.99505 * 179.97438 * 17 16 14 40 40 H 1.07999 * 120.03930 * 0.04061 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1982 0.0000 4 6 3.5804 1.2028 0.0005 5 6 4.2765 0.0098 0.0005 6 6 5.7835 0.0157 0.0005 7 6 3.5860 -1.1953 0.0005 8 7 4.2867 -2.4035 0.0000 9 6 3.5568 -3.6737 0.0006 10 6 4.5534 -4.8347 0.0004 11 1 5.2375 -4.7263 0.8419 12 6 5.3475 -4.8248 -1.3073 13 6 3.7952 -6.1576 0.1267 14 6 4.7803 -7.2914 0.2501 15 1 5.8410 -7.0886 0.2390 16 6 4.3274 -8.5874 0.3770 17 7 5.1872 -9.5769 0.4841 18 14 2.4927 -8.9381 0.3954 19 1 2.0195 -9.1719 -0.9927 20 1 2.2277 -10.1453 1.2186 21 1 1.7724 -7.7759 0.9748 22 6 2.1967 -1.1963 -0.0049 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3634 0.8899 0.5139 26 1 1.6559 2.1324 -0.0007 27 1 4.1167 2.1403 0.0010 28 1 6.1468 0.0175 -1.0272 29 1 6.1434 0.9069 0.5147 30 1 6.1503 -0.8730 0.5140 31 1 5.2568 -2.4016 -0.0008 32 1 2.9295 -3.7327 -0.8889 33 1 2.9309 -3.7327 0.8911 34 1 5.8876 -3.8824 -1.3973 35 1 6.0571 -5.6522 -1.3076 36 1 4.6633 -4.9333 -2.1488 37 1 3.1607 -6.1296 1.0126 38 1 3.1770 -6.3081 -0.7583 39 1 4.8685 -10.4886 0.5738 40 1 1.6567 -2.1316 -0.0094 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602489749.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:21:56 Heat of formation + Delta-G solvation = -19.871872 kcal Electronic energy + Delta-G solvation = -17512.827257 eV Core-core repulsion = 14904.400112 eV Total energy + Delta-G solvation = -2608.427145 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.65163 -38.20099 -35.77338 -34.55000 -33.72775 -30.50218 -30.04560 -29.06798 -27.30114 -25.55538 -24.53668 -22.47008 -21.73631 -20.63295 -18.98944 -17.60116 -17.07713 -16.43118 -16.04613 -16.03230 -15.18484 -15.06541 -14.90303 -14.56983 -14.24226 -14.03090 -13.92813 -13.65864 -13.49288 -13.30607 -12.88118 -12.77150 -12.70418 -12.41054 -12.23831 -12.03343 -11.76642 -11.70658 -11.63672 -11.35377 -11.13233 -10.78726 -10.75101 -9.39824 -8.27445 -8.18964 -6.30275 0.56003 0.80420 1.36092 1.37798 1.49055 2.36778 2.57637 2.99186 3.08138 3.94224 4.02470 4.05570 4.12141 4.26659 4.30600 4.42353 4.50386 4.67802 4.72734 4.78645 4.83756 4.85911 4.87875 4.88717 4.94700 4.99864 5.06242 5.18415 5.22002 5.32971 5.40333 5.45103 5.53666 5.61712 5.67726 5.72132 5.86511 6.10355 6.30245 6.49975 6.77068 6.89395 7.33582 8.89091 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.029343 B = 0.004656 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.012235 B = 6012.275139 C = 6827.583253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.055 4.055 3 C -0.190 4.190 4 C -0.076 4.076 5 C -0.186 4.186 6 C -0.102 4.102 7 C 0.206 3.794 8 N -0.741 5.741 9 C 0.140 3.860 10 C -0.080 4.080 11 H 0.058 0.942 12 C -0.127 4.127 13 C -0.004 4.004 14 C -0.520 4.520 15 H 0.037 0.963 16 C 0.003 3.997 17 N -0.953 5.953 18 Si 0.946 3.054 19 H -0.268 1.268 20 H -0.287 1.287 21 H -0.246 1.246 22 C -0.218 4.218 23 H 0.077 0.923 24 H 0.063 0.937 25 H 0.079 0.921 26 H 0.135 0.865 27 H 0.140 0.860 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.401 0.599 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.039 0.961 36 H 0.049 0.951 37 H 0.019 0.981 38 H 0.020 0.980 39 H 0.265 0.735 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.825 22.591 -1.810 23.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.056 4.056 3 C -0.210 4.210 4 C -0.094 4.094 5 C -0.191 4.191 6 C -0.159 4.159 7 C 0.102 3.898 8 N -0.372 5.372 9 C 0.015 3.985 10 C -0.099 4.099 11 H 0.076 0.924 12 C -0.184 4.184 13 C -0.042 4.042 14 C -0.558 4.558 15 H 0.055 0.945 16 C -0.193 4.193 17 N -0.594 5.594 18 Si 0.769 3.231 19 H -0.193 1.193 20 H -0.213 1.213 21 H -0.170 1.170 22 C -0.241 4.241 23 H 0.095 0.905 24 H 0.082 0.918 25 H 0.098 0.902 26 H 0.153 0.847 27 H 0.158 0.842 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.238 0.762 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.038 0.962 38 H 0.039 0.961 39 H 0.074 0.926 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.926 22.224 -1.791 23.347 hybrid contribution 0.036 -1.079 0.094 1.083 sum -6.889 21.145 -1.697 22.304 Atomic orbital electron populations 1.20823 0.89967 1.03245 1.02860 1.19952 0.96900 0.92468 0.96278 1.21014 0.94303 0.97668 1.07968 1.21042 0.94260 0.97140 0.96962 1.19642 0.96789 0.91705 1.10939 1.20593 0.90355 1.02735 1.02242 1.17922 0.91629 0.86107 0.94120 1.44835 1.08386 1.02266 1.81684 1.21289 0.94409 0.82245 1.00508 1.21069 0.96847 0.93606 0.98411 0.92359 1.21638 0.99712 1.00554 0.96495 1.19512 0.95528 0.92652 0.96546 1.21410 0.93781 0.91626 1.49002 0.94499 1.25967 1.02759 0.96117 0.94449 1.70068 1.36594 1.00190 1.52522 0.85725 0.80166 0.78306 0.78869 1.19270 1.21258 1.16978 1.20677 0.92309 0.98662 1.12483 0.90486 0.91781 0.90164 0.84681 0.84191 0.91291 0.90221 0.92679 0.76157 0.92379 0.92932 0.92068 0.94211 0.93144 0.96244 0.96123 0.92647 0.86739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.93 10.01 71.24 0.71 -1.22 16 2 C -0.06 -1.27 5.88 -19.89 -0.12 -1.39 16 3 C -0.19 -3.95 9.70 22.29 0.22 -3.73 16 4 C -0.08 -1.58 9.70 22.25 0.22 -1.36 16 5 C -0.19 -4.43 5.90 -19.73 -0.12 -4.55 16 6 C -0.10 -1.96 9.57 71.24 0.68 -1.28 16 7 C 0.21 5.65 6.63 38.22 0.25 5.91 16 8 N -0.74 -20.68 5.36 -339.40 -1.82 -22.50 16 9 C 0.14 4.35 4.30 86.38 0.37 4.72 16 10 C -0.08 -2.99 2.37 -10.79 -0.03 -3.01 16 11 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 12 C -0.13 -4.47 8.88 71.98 0.64 -3.84 16 13 C 0.00 -0.20 3.52 29.85 0.10 -0.10 16 14 C -0.52 -29.35 8.96 25.60 0.23 -29.12 16 15 H 0.04 2.29 7.30 -2.91 -0.02 2.27 16 16 C 0.00 0.20 5.47 84.65 0.46 0.66 16 17 N -0.95 -59.66 13.96 21.45 0.30 -59.36 16 18 Si 0.95 44.02 27.47 68.60 1.88 45.90 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 20 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 21 H -0.25 -10.60 6.54 99.48 0.65 -9.95 16 22 C -0.22 -5.89 8.96 22.40 0.20 -5.69 16 23 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 24 H 0.06 1.10 8.09 -2.39 -0.02 1.08 16 25 H 0.08 1.10 8.08 -2.39 -0.02 1.08 16 26 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 27 H 0.14 2.16 8.06 -2.91 -0.02 2.13 16 28 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.08 1.24 8.09 -2.39 -0.02 1.22 16 30 H 0.05 1.09 6.55 -2.39 -0.02 1.07 16 31 H 0.40 10.45 5.65 -92.71 -0.52 9.93 16 32 H 0.06 1.77 7.94 -2.39 -0.02 1.76 16 33 H 0.05 1.66 7.96 -2.38 -0.02 1.64 16 34 H 0.06 1.79 7.18 -2.39 -0.02 1.77 16 35 H 0.04 1.62 6.95 -2.39 -0.02 1.60 16 36 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16 38 H 0.02 0.91 7.57 -2.39 -0.02 0.89 16 39 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 40 H 0.11 3.10 6.74 -2.91 -0.02 3.09 16 Total: -1.00 -64.71 319.66 4.62 -60.09 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 0.42 Total: 19.84 kcal Atomic # 6 Polarization: -47.81 SS G_CDS: 3.83 Total: -43.98 kcal Atomic # 7 Polarization: -80.33 SS G_CDS: -1.52 Total: -81.85 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.88 Total: 45.90 kcal Total: -64.71 4.62 -60.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602489749.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.220 kcal (2) G-P(sol) polarization free energy of solvation -64.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds