Wall clock time and date at job start Thu Apr 9 2020 12:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38312 * 119.92571 * 2 1 4 4 C 1.38083 * 120.07284 * 180.02562 * 3 2 1 5 5 C 1.38928 * 119.92967 * 0.02562 * 4 3 2 6 6 N 1.39671 * 120.07930 * 179.97438 * 5 4 3 7 7 C 1.46499 * 119.99620 * 359.71768 * 6 5 4 8 8 C 1.53004 * 109.47198 * 180.28012 * 7 6 5 9 9 H 1.09000 * 109.47217 * 54.99952 * 8 7 6 10 10 C 1.53000 * 109.46787 * 295.00051 * 8 7 6 11 11 C 1.52995 * 109.47195 * 174.99817 * 8 7 6 12 12 C 1.50699 * 109.46998 * 184.99658 * 11 8 7 13 13 H 1.07997 * 120.00253 * 0.02562 * 12 11 8 14 14 C 1.37880 * 119.99854 * 179.97438 * 12 11 8 15 15 N 1.31511 * 120.00276 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00115 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46842 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47104 * 120.00159 * 16 14 12 19 19 H 1.48501 * 109.47496 * 240.00676 * 16 14 12 20 20 C 1.38895 * 119.84584 * 0.25133 * 5 4 3 21 21 C 1.50707 * 120.03397 * 179.73007 * 20 5 4 22 22 C 1.38121 * 119.92549 * 359.47284 * 20 5 4 23 23 H 1.08999 * 109.46937 * 90.00225 * 1 2 3 24 24 H 1.09000 * 109.46727 * 210.00414 * 1 2 3 25 25 H 1.08997 * 109.46655 * 329.99969 * 1 2 3 26 26 H 1.07995 * 119.95990 * 0.02562 * 3 2 1 27 27 H 1.08001 * 120.03320 * 179.97438 * 4 3 2 28 28 H 0.97001 * 120.00529 * 180.02562 * 6 5 4 29 29 H 1.09009 * 109.47454 * 300.27781 * 7 6 5 30 30 H 1.08998 * 109.47492 * 60.28076 * 7 6 5 31 31 H 1.09003 * 109.47289 * 60.00086 * 10 8 7 32 32 H 1.09004 * 109.46667 * 179.97438 * 10 8 7 33 33 H 1.09001 * 109.47149 * 299.99381 * 10 8 7 34 34 H 1.08994 * 109.47561 * 305.00160 * 11 8 7 35 35 H 1.09001 * 109.46993 * 65.00048 * 11 8 7 36 36 H 0.97001 * 120.00763 * 179.97438 * 15 14 12 37 37 H 1.08997 * 109.46892 * 90.00172 * 21 20 5 38 38 H 1.08998 * 109.47062 * 209.99962 * 21 20 5 39 39 H 1.08998 * 109.47121 * 329.99871 * 21 20 5 40 40 H 1.08006 * 119.95962 * 180.27565 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1987 0.0000 4 6 3.5778 1.2023 -0.0005 5 6 4.2741 0.0000 -0.0016 6 7 5.6708 0.0000 -0.0027 7 6 6.4033 1.2687 -0.0089 8 6 7.9075 0.9892 -0.0159 9 1 8.1529 0.3415 -0.8576 10 6 8.3040 0.2993 1.2909 11 6 8.6708 2.3085 -0.1482 12 6 10.1452 2.0249 -0.2784 13 1 10.5020 1.0057 -0.2683 14 6 11.0384 3.0668 -0.4116 15 7 10.6039 4.3080 -0.4244 16 14 12.8659 2.7154 -0.5737 17 1 13.0935 1.2485 -0.5314 18 1 13.3612 3.2556 -1.8653 19 1 13.5958 3.3624 0.5460 20 6 3.5780 -1.2019 -0.0074 21 6 4.3290 -2.5085 -0.0148 22 6 2.1968 -1.1983 -0.0011 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3632 0.8900 0.5138 26 1 1.6552 2.1329 0.0004 27 1 4.1160 2.1387 -0.0010 28 1 6.1558 -0.8400 -0.0038 29 1 6.1355 1.8385 -0.8988 30 1 6.1444 1.8421 0.8811 31 1 7.7602 -0.6407 1.3851 32 1 9.3756 0.0997 1.2857 33 1 8.0588 0.9469 2.1326 34 1 8.3239 2.8419 -1.0331 35 1 8.4953 2.9201 0.7368 36 1 11.2323 5.0410 -0.5177 37 1 4.5107 -2.8288 1.0111 38 1 3.7381 -3.2643 -0.5322 39 1 5.2813 -2.3773 -0.5286 40 1 1.6550 -2.1326 -0.0011 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602492759.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:22:00 Heat of formation + Delta-G solvation = -7.751304 kcal Electronic energy + Delta-G solvation = -17373.132952 eV Core-core repulsion = 14765.231395 eV Total energy + Delta-G solvation = -2607.901558 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.61239 -36.78115 -34.41782 -32.77884 -32.00693 -30.59481 -27.23888 -27.05505 -26.35250 -24.91048 -23.03166 -21.43933 -20.22412 -19.24091 -17.01140 -16.54447 -15.74461 -14.73634 -14.59723 -14.52321 -14.00349 -13.84712 -13.66131 -13.20409 -13.01754 -12.75601 -12.60290 -12.39330 -12.16133 -11.97308 -11.64453 -11.41951 -11.10270 -10.93926 -10.89488 -10.73590 -10.40833 -10.33236 -9.96036 -9.52369 -9.31724 -9.05385 -8.58378 -8.39207 -7.01408 -6.03460 -4.05331 1.57859 1.78219 3.28524 3.36398 3.39657 3.79015 3.99006 4.43372 4.89834 4.99951 5.13659 5.31761 5.32669 5.35195 5.54051 5.56583 5.61422 5.65673 5.69196 5.77525 5.86851 5.90306 5.90986 6.08588 6.20462 6.27729 6.37186 6.41964 6.55817 6.62092 6.82664 6.84604 6.98616 7.01950 7.11586 7.60630 7.63454 7.74216 7.95285 8.02812 8.37779 9.00593 9.58568 11.07977 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.044817 B = 0.003871 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.617486 B = 7231.750667 C = 7709.880301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.159 4.159 3 C -0.075 4.075 4 C -0.194 4.194 5 C 0.222 3.778 6 N -0.740 5.740 7 C 0.125 3.875 8 C -0.096 4.096 9 H 0.061 0.939 10 C -0.132 4.132 11 C 0.030 3.970 12 C -0.516 4.516 13 H 0.057 0.943 14 C 0.056 3.944 15 N -0.895 5.895 16 Si 0.890 3.110 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.170 4.170 21 C -0.103 4.103 22 C -0.073 4.073 23 H 0.059 0.941 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.116 0.884 27 H 0.122 0.878 28 H 0.397 0.603 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.029 0.971 32 H 0.063 0.937 33 H 0.046 0.954 34 H 0.017 0.983 35 H 0.019 0.981 36 H 0.260 0.740 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.153 -10.016 1.362 19.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.161 4.161 3 C -0.093 4.093 4 C -0.217 4.217 5 C 0.117 3.883 6 N -0.369 5.369 7 C 0.002 3.998 8 C -0.115 4.115 9 H 0.080 0.920 10 C -0.189 4.189 11 C -0.007 4.007 12 C -0.554 4.554 13 H 0.075 0.925 14 C -0.145 4.145 15 N -0.534 5.534 16 Si 0.718 3.282 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.175 4.175 21 C -0.160 4.160 22 C -0.091 4.091 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.134 0.866 27 H 0.140 0.860 28 H 0.233 0.767 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.036 0.964 35 H 0.037 0.963 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -15.969 -9.636 1.353 18.700 hybrid contribution 1.291 -0.258 -0.118 1.322 sum -14.678 -9.895 1.235 17.745 Atomic orbital electron populations 1.20605 0.91911 1.01859 1.01397 1.19547 0.95488 0.93104 1.07952 1.20723 0.93423 0.97133 0.98058 1.20680 0.94250 0.96664 1.10087 1.17740 0.84074 0.93222 0.93304 1.45081 1.02127 1.09004 1.80680 1.21626 0.92757 0.84902 1.00525 1.21439 0.91318 1.01175 0.97565 0.92049 1.21720 1.01708 0.98088 0.97376 1.19080 0.94311 0.90028 0.97329 1.21229 0.91735 0.92725 1.49717 0.92509 1.25017 0.98885 0.95145 0.95430 1.69966 1.34471 0.98393 1.50583 0.86562 0.85579 0.78364 0.77650 1.19771 1.21039 1.21038 1.19319 0.93803 0.93558 1.10837 1.20561 0.99564 0.94230 1.01657 1.20555 0.92638 0.97101 0.98847 0.92209 0.92385 0.92276 0.86638 0.85976 0.76699 0.92617 0.92641 0.95159 0.91765 0.93450 0.96450 0.96302 0.93036 0.91900 0.91876 0.92260 0.86774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.93 10.01 36.01 0.36 -0.57 16 2 C -0.16 -1.93 5.88 -104.58 -0.62 -2.54 16 3 C -0.07 -0.97 9.69 -39.61 -0.38 -1.35 16 4 C -0.19 -2.83 9.31 -39.38 -0.37 -3.20 16 5 C 0.22 3.30 6.63 -83.79 -0.56 2.74 16 6 N -0.74 -11.16 5.36 -58.63 -0.31 -11.48 16 7 C 0.13 2.14 4.30 -4.04 -0.02 2.12 16 8 C -0.10 -1.87 2.37 -90.62 -0.22 -2.09 16 9 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 10 C -0.13 -2.39 8.88 37.16 0.33 -2.06 16 11 C 0.03 0.75 4.45 -27.89 -0.12 0.62 16 12 C -0.52 -14.10 8.41 -34.44 -0.29 -14.39 16 13 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 14 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.89 -26.50 13.29 55.43 0.74 -25.77 16 16 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 17 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 C -0.17 -2.26 5.90 -104.42 -0.62 -2.87 16 21 C -0.10 -1.12 9.57 36.01 0.34 -0.78 16 22 C -0.07 -0.89 9.35 -39.62 -0.37 -1.26 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 25 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 26 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 27 H 0.12 1.78 6.74 -52.49 -0.35 1.42 16 28 H 0.40 5.56 5.65 -40.82 -0.23 5.33 16 29 H 0.06 0.98 7.95 -51.92 -0.41 0.56 16 30 H 0.06 0.96 7.95 -51.93 -0.41 0.54 16 31 H 0.03 0.46 7.18 -51.93 -0.37 0.09 16 32 H 0.06 1.25 6.95 -51.93 -0.36 0.89 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 39 H 0.06 0.64 6.55 -51.93 -0.34 0.30 16 40 H 0.11 1.15 8.06 -52.48 -0.42 0.73 16 LS Contribution 323.27 15.07 4.87 4.87 Total: -1.00 -29.22 323.27 -8.97 -38.19 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -6.63 Total: 1.96 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: -2.62 Total: -24.13 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 0.42 Total: -37.24 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.22 -8.97 -38.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602492759.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.441 kcal (2) G-P(sol) polarization free energy of solvation -29.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds