Wall clock time and date at job start Thu Apr 9 2020 12:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38312 * 119.92571 * 2 1 4 4 C 1.38083 * 120.07284 * 180.02562 * 3 2 1 5 5 C 1.38928 * 119.92967 * 0.02562 * 4 3 2 6 6 N 1.39671 * 120.07930 * 179.97438 * 5 4 3 7 7 C 1.46499 * 119.99620 * 359.71768 * 6 5 4 8 8 C 1.53004 * 109.47198 * 180.28012 * 7 6 5 9 9 H 1.09000 * 109.47217 * 54.99952 * 8 7 6 10 10 C 1.53000 * 109.46787 * 295.00051 * 8 7 6 11 11 C 1.52995 * 109.47195 * 174.99817 * 8 7 6 12 12 C 1.50699 * 109.46998 * 184.99658 * 11 8 7 13 13 H 1.07997 * 120.00253 * 0.02562 * 12 11 8 14 14 C 1.37880 * 119.99854 * 179.97438 * 12 11 8 15 15 N 1.31511 * 120.00276 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00115 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46842 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47104 * 120.00159 * 16 14 12 19 19 H 1.48501 * 109.47496 * 240.00676 * 16 14 12 20 20 C 1.38895 * 119.84584 * 0.25133 * 5 4 3 21 21 C 1.50707 * 120.03397 * 179.73007 * 20 5 4 22 22 C 1.38121 * 119.92549 * 359.47284 * 20 5 4 23 23 H 1.08999 * 109.46937 * 90.00225 * 1 2 3 24 24 H 1.09000 * 109.46727 * 210.00414 * 1 2 3 25 25 H 1.08997 * 109.46655 * 329.99969 * 1 2 3 26 26 H 1.07995 * 119.95990 * 0.02562 * 3 2 1 27 27 H 1.08001 * 120.03320 * 179.97438 * 4 3 2 28 28 H 0.97001 * 120.00529 * 180.02562 * 6 5 4 29 29 H 1.09009 * 109.47454 * 300.27781 * 7 6 5 30 30 H 1.08998 * 109.47492 * 60.28076 * 7 6 5 31 31 H 1.09003 * 109.47289 * 60.00086 * 10 8 7 32 32 H 1.09004 * 109.46667 * 179.97438 * 10 8 7 33 33 H 1.09001 * 109.47149 * 299.99381 * 10 8 7 34 34 H 1.08994 * 109.47561 * 305.00160 * 11 8 7 35 35 H 1.09001 * 109.46993 * 65.00048 * 11 8 7 36 36 H 0.97001 * 120.00763 * 179.97438 * 15 14 12 37 37 H 1.08997 * 109.46892 * 90.00172 * 21 20 5 38 38 H 1.08998 * 109.47062 * 209.99962 * 21 20 5 39 39 H 1.08998 * 109.47121 * 329.99871 * 21 20 5 40 40 H 1.08006 * 119.95962 * 180.27565 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1987 0.0000 4 6 3.5778 1.2023 -0.0005 5 6 4.2741 0.0000 -0.0016 6 7 5.6708 0.0000 -0.0027 7 6 6.4033 1.2687 -0.0089 8 6 7.9075 0.9892 -0.0159 9 1 8.1529 0.3415 -0.8576 10 6 8.3040 0.2993 1.2909 11 6 8.6708 2.3085 -0.1482 12 6 10.1452 2.0249 -0.2784 13 1 10.5020 1.0057 -0.2683 14 6 11.0384 3.0668 -0.4116 15 7 10.6039 4.3080 -0.4244 16 14 12.8659 2.7154 -0.5737 17 1 13.0935 1.2485 -0.5314 18 1 13.3612 3.2556 -1.8653 19 1 13.5958 3.3624 0.5460 20 6 3.5780 -1.2019 -0.0074 21 6 4.3290 -2.5085 -0.0148 22 6 2.1968 -1.1983 -0.0011 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3632 0.8900 0.5138 26 1 1.6552 2.1329 0.0004 27 1 4.1160 2.1387 -0.0010 28 1 6.1558 -0.8400 -0.0038 29 1 6.1355 1.8385 -0.8988 30 1 6.1444 1.8421 0.8811 31 1 7.7602 -0.6407 1.3851 32 1 9.3756 0.0997 1.2857 33 1 8.0588 0.9469 2.1326 34 1 8.3239 2.8419 -1.0331 35 1 8.4953 2.9201 0.7368 36 1 11.2323 5.0410 -0.5177 37 1 4.5107 -2.8288 1.0111 38 1 3.7381 -3.2643 -0.5322 39 1 5.2813 -2.3773 -0.5286 40 1 1.6550 -2.1326 -0.0011 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602492759.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:22:00 Heat of formation + Delta-G solvation = -22.311842 kcal Electronic energy + Delta-G solvation = -17373.764345 eV Core-core repulsion = 14765.231395 eV Total energy + Delta-G solvation = -2608.532950 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.65151 -38.19307 -35.84899 -34.34626 -33.35113 -31.71631 -28.99020 -28.05242 -27.64451 -26.14885 -24.74485 -22.65059 -21.24228 -20.77499 -18.57567 -18.13841 -17.00602 -16.49622 -16.09469 -15.63126 -15.12652 -14.99679 -14.81594 -14.33333 -14.24413 -13.95948 -13.90398 -13.79601 -13.39958 -13.21483 -12.82885 -12.77905 -12.74817 -12.47634 -12.28335 -12.07007 -11.98252 -11.67893 -11.64859 -11.18470 -11.03519 -10.67105 -10.55922 -9.57752 -8.19227 -8.11509 -6.28515 0.57028 0.76067 1.39582 1.40365 1.52769 2.39824 2.59920 2.97869 3.14830 3.96884 4.04023 4.07831 4.15336 4.21131 4.35126 4.47806 4.53092 4.67470 4.73391 4.78360 4.84486 4.86889 4.90494 4.94965 4.96500 5.09458 5.18194 5.23507 5.29714 5.40128 5.42582 5.50053 5.54060 5.64683 5.74328 5.84497 5.87832 6.08834 6.25174 6.48408 6.86727 6.92300 7.40038 8.93087 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.044817 B = 0.003871 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.617486 B = 7231.750667 C = 7709.880301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.158 4.158 3 C -0.086 4.086 4 C -0.214 4.214 5 C 0.197 3.803 6 N -0.739 5.739 7 C 0.143 3.857 8 C -0.085 4.085 9 H 0.062 0.938 10 C -0.124 4.124 11 C 0.035 3.965 12 C -0.529 4.529 13 H 0.063 0.937 14 C -0.002 4.002 15 N -0.934 5.934 16 Si 0.961 3.039 17 H -0.261 1.261 18 H -0.281 1.281 19 H -0.280 1.280 20 C -0.174 4.174 21 C -0.103 4.103 22 C -0.079 4.079 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.131 0.869 27 H 0.110 0.890 28 H 0.402 0.598 29 H 0.044 0.956 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.041 0.959 34 H -0.010 1.010 35 H -0.006 1.006 36 H 0.262 0.738 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.056 0.944 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.026 -12.221 1.508 21.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.160 4.160 3 C -0.105 4.105 4 C -0.237 4.237 5 C 0.093 3.907 6 N -0.370 5.370 7 C 0.018 3.982 8 C -0.104 4.104 9 H 0.080 0.920 10 C -0.181 4.181 11 C -0.003 4.003 12 C -0.567 4.567 13 H 0.082 0.918 14 C -0.199 4.199 15 N -0.575 5.575 16 Si 0.786 3.214 17 H -0.185 1.185 18 H -0.207 1.207 19 H -0.206 1.206 20 C -0.178 4.178 21 C -0.159 4.159 22 C -0.098 4.098 23 H 0.088 0.912 24 H 0.091 0.909 25 H 0.085 0.915 26 H 0.148 0.852 27 H 0.129 0.871 28 H 0.240 0.760 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.008 0.992 35 H 0.012 0.988 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.075 0.925 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.868 -11.868 1.501 20.679 hybrid contribution 1.431 0.431 -0.171 1.504 sum -15.437 -11.436 1.331 19.258 Atomic orbital electron populations 1.20659 0.89627 1.03019 1.02351 1.19978 0.97254 0.92712 1.06079 1.20973 0.92910 0.98491 0.98125 1.20794 0.95258 0.96429 1.11205 1.17942 0.83772 0.94082 0.94905 1.44800 1.02369 1.08065 1.81774 1.21211 0.91301 0.85908 0.99745 1.21205 0.92290 0.98298 0.98580 0.91952 1.21626 1.01164 0.99282 0.96038 1.18954 0.94355 0.92205 0.94794 1.21642 0.92984 0.93047 1.49035 0.91849 1.25945 1.03926 0.94922 0.95143 1.70100 1.36205 0.99441 1.51770 0.85452 0.79543 0.78776 0.77610 1.18460 1.20662 1.20604 1.19660 0.94524 0.93875 1.09767 1.20611 0.99479 0.93429 1.02420 1.20927 0.92430 0.98285 0.98114 0.91243 0.90932 0.91502 0.85157 0.87150 0.76029 0.93808 0.93281 0.91901 0.93137 0.94017 0.99202 0.98804 0.92909 0.91066 0.90058 0.92491 0.84194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.54 10.01 71.24 0.71 -0.83 16 2 C -0.16 -3.51 5.88 -19.84 -0.12 -3.63 16 3 C -0.09 -2.17 9.69 22.25 0.22 -1.95 16 4 C -0.21 -6.31 9.31 22.40 0.21 -6.10 16 5 C 0.20 5.74 6.63 38.21 0.25 6.00 16 6 N -0.74 -22.02 5.36 -339.41 -1.82 -23.84 16 7 C 0.14 5.00 4.30 86.38 0.37 5.37 16 8 C -0.08 -3.36 2.37 -10.79 -0.03 -3.38 16 9 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 10 C -0.12 -4.41 8.88 71.98 0.64 -3.78 16 11 C 0.03 1.78 4.45 29.85 0.13 1.91 16 12 C -0.53 -29.35 8.41 25.60 0.22 -29.13 16 13 H 0.06 3.36 7.06 -2.91 -0.02 3.34 16 14 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 15 N -0.93 -56.72 13.29 21.45 0.28 -56.43 16 16 Si 0.96 44.02 29.54 68.60 2.03 46.04 16 17 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 18 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 20 C -0.17 -4.29 5.90 -19.73 -0.12 -4.41 16 21 C -0.10 -1.97 9.57 71.24 0.68 -1.29 16 22 C -0.08 -1.74 9.35 22.25 0.21 -1.53 16 23 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.07 0.92 8.08 -2.39 -0.02 0.91 16 25 H 0.07 0.94 8.08 -2.39 -0.02 0.92 16 26 H 0.13 2.74 8.06 -2.91 -0.02 2.72 16 27 H 0.11 3.39 6.74 -2.91 -0.02 3.37 16 28 H 0.40 10.80 5.65 -92.71 -0.52 10.28 16 29 H 0.04 1.61 7.95 -2.38 -0.02 1.60 16 30 H 0.05 1.76 7.95 -2.39 -0.02 1.74 16 31 H 0.06 1.82 7.18 -2.39 -0.02 1.81 16 32 H 0.05 1.93 6.95 -2.38 -0.02 1.91 16 33 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 34 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 35 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 36 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 37 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.08 1.25 8.09 -2.39 -0.02 1.24 16 39 H 0.06 1.12 6.55 -2.39 -0.02 1.10 16 40 H 0.14 2.30 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -63.31 323.27 4.81 -58.50 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.48 Total: 18.12 kcal Atomic # 6 Polarization: -46.24 SS G_CDS: 3.84 Total: -42.39 kcal Atomic # 7 Polarization: -78.74 SS G_CDS: -1.53 Total: -80.27 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -63.31 4.81 -58.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602492759.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.189 kcal (2) G-P(sol) polarization free energy of solvation -63.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds