Wall clock time and date at job start Thu Apr 9 2020 12:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38307 * 119.96565 * 2 1 4 4 C 1.38261 * 120.15029 * 180.02562 * 3 2 1 5 5 C 1.38125 * 120.07750 * 0.02562 * 4 3 2 6 6 C 1.38893 * 119.92196 * 359.97438 * 5 4 3 7 7 N 1.39680 * 120.07440 * 179.97438 * 6 5 4 8 8 C 1.46494 * 119.99734 * 0.02562 * 7 6 5 9 9 C 1.53010 * 109.46805 * 180.02562 * 8 7 6 10 10 H 1.08997 * 109.46832 * 305.00000 * 9 8 7 11 11 C 1.52998 * 109.46934 * 64.99655 * 9 8 7 12 12 C 1.52997 * 109.46726 * 184.99789 * 9 8 7 13 13 C 1.50705 * 109.46664 * 174.99727 * 12 9 8 14 14 H 1.07999 * 119.99900 * 0.02562 * 13 12 9 15 15 C 1.37876 * 119.99926 * 179.97438 * 13 12 9 16 16 N 1.31522 * 119.99967 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00138 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46791 * 60.00528 * 17 15 13 19 19 H 1.48500 * 109.46900 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47216 * 300.00620 * 17 15 13 21 21 C 1.38087 * 119.95959 * 179.97438 * 2 1 3 22 22 C 1.50696 * 120.03613 * 359.97438 * 21 2 1 23 23 H 1.08989 * 109.47406 * 89.99271 * 1 2 3 24 24 H 1.08995 * 109.47008 * 210.00406 * 1 2 3 25 25 H 1.09001 * 109.46501 * 329.99495 * 1 2 3 26 26 H 1.07998 * 119.92585 * 359.97438 * 3 2 1 27 27 H 1.07995 * 119.96543 * 179.97438 * 4 3 2 28 28 H 1.07995 * 120.04491 * 179.70058 * 5 4 3 29 29 H 0.97004 * 119.99805 * 179.97438 * 7 6 5 30 30 H 1.08999 * 109.46902 * 299.99655 * 8 7 6 31 31 H 1.08999 * 109.47607 * 60.00411 * 8 7 6 32 32 H 1.08993 * 109.47475 * 299.99890 * 11 9 8 33 33 H 1.08997 * 109.47079 * 60.00497 * 11 9 8 34 34 H 1.09004 * 109.46545 * 179.97438 * 11 9 8 35 35 H 1.08999 * 109.47368 * 294.99181 * 12 9 8 36 36 H 1.09002 * 109.47129 * 55.00273 * 12 9 8 37 37 H 0.97000 * 119.99720 * 179.97438 * 16 15 13 38 38 H 1.08992 * 109.47508 * 90.00582 * 22 21 2 39 39 H 1.09006 * 109.46870 * 210.00330 * 22 21 2 40 40 H 1.09004 * 109.47267 * 329.99985 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2026 -0.0005 5 6 4.2765 0.0096 -0.0016 6 6 3.5859 -1.1955 -0.0016 7 7 4.2866 -2.4038 -0.0032 8 6 5.7516 -2.4009 -0.0044 9 6 6.2644 -3.8425 -0.0067 10 1 5.8314 -4.3834 0.8347 11 6 5.8598 -4.5256 -1.3146 12 6 7.7893 -3.8415 0.1178 13 6 8.2842 -5.2598 0.2391 14 1 7.5814 -6.0798 0.2280 15 6 9.6343 -5.5105 0.3631 16 7 10.4901 -4.5120 0.3761 17 14 10.2478 -7.2685 0.5142 18 1 9.8496 -8.0371 -0.6924 19 1 11.7279 -7.2675 0.6349 20 1 9.6536 -7.8982 1.7206 21 6 2.1966 -1.1964 0.0005 22 6 1.4430 -2.5014 0.0017 23 1 -0.3633 0.0001 -1.0275 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3632 0.8900 0.5139 26 1 1.6561 2.1325 -0.0004 27 1 4.1168 2.1400 -0.0010 28 1 5.3564 0.0137 -0.0069 29 1 3.8032 -3.2448 -0.0029 30 1 6.1132 -1.8856 -0.8942 31 1 6.1147 -1.8872 0.8858 32 1 4.7735 -4.5262 -1.4033 33 1 6.2927 -3.9846 -2.1560 34 1 6.2255 -5.5524 -1.3164 35 1 8.2258 -3.3789 -0.7673 36 1 8.0811 -3.2778 1.0039 37 1 11.4399 -4.6884 0.4637 38 1 1.2610 -2.8168 -1.0256 39 1 2.0323 -3.2607 0.5159 40 1 0.4908 -2.3706 0.5158 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602495450.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:22:08 Heat of formation + Delta-G solvation = -4.585522 kcal Electronic energy + Delta-G solvation = -17470.180132 eV Core-core repulsion = 14862.415852 eV Total energy + Delta-G solvation = -2607.764279 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -39.67554 -36.77395 -34.18386 -33.21169 -32.21414 -30.04460 -27.34048 -26.75024 -26.41320 -25.48035 -22.91302 -21.12392 -20.32333 -19.21583 -16.83531 -16.46417 -15.95027 -15.08478 -14.67554 -14.52174 -14.21490 -13.81795 -13.60791 -12.95523 -12.86381 -12.73845 -12.57526 -12.48387 -12.18716 -11.79684 -11.66338 -11.48063 -11.08209 -10.93620 -10.88860 -10.67384 -10.42891 -10.33698 -9.98259 -9.59618 -9.31315 -9.07366 -8.40934 -8.38206 -7.08306 -6.02868 -4.04940 1.56465 1.82364 3.31021 3.35922 3.37754 3.78222 4.01080 4.43639 4.88450 4.99224 5.14770 5.23627 5.32879 5.38422 5.48504 5.53686 5.63296 5.67584 5.70042 5.81270 5.83507 5.87527 5.92283 6.06400 6.20748 6.30519 6.37372 6.42260 6.56155 6.71216 6.81999 6.84221 6.98777 7.02051 7.11982 7.60499 7.64218 7.74578 7.95610 8.03097 8.38038 9.00497 9.58813 11.08506 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.045636 B = 0.003946 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.403329 B = 7094.308098 C = 7558.676166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.044 4.044 3 C -0.189 4.189 4 C -0.073 4.073 5 C -0.203 4.203 6 C 0.229 3.771 7 N -0.740 5.740 8 C 0.126 3.874 9 C -0.096 4.096 10 H 0.061 0.939 11 C -0.132 4.132 12 C 0.031 3.969 13 C -0.517 4.517 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.891 3.109 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.173 4.173 22 C -0.106 4.106 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.112 0.888 27 H 0.116 0.884 28 H 0.121 0.879 29 H 0.397 0.603 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.029 0.971 33 H 0.046 0.954 34 H 0.063 0.937 35 H 0.019 0.981 36 H 0.017 0.983 37 H 0.261 0.739 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.404 8.038 -1.285 19.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.045 4.045 3 C -0.209 4.209 4 C -0.092 4.092 5 C -0.226 4.226 6 C 0.123 3.877 7 N -0.368 5.368 8 C 0.002 3.998 9 C -0.115 4.115 10 H 0.079 0.921 11 C -0.189 4.189 12 C -0.007 4.007 13 C -0.556 4.556 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.534 5.534 17 Si 0.719 3.281 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.178 4.178 22 C -0.163 4.163 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.130 0.870 27 H 0.134 0.866 28 H 0.139 0.861 29 H 0.233 0.767 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.037 0.963 36 H 0.035 0.965 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.972 8.068 -1.274 18.836 hybrid contribution 0.455 -1.189 0.088 1.276 sum -16.517 6.879 -1.185 17.931 Atomic orbital electron populations 1.20836 0.91900 1.02437 1.02009 1.19419 0.95186 0.92249 0.97630 1.20637 0.94090 0.96833 1.09348 1.20813 0.94023 0.97144 0.97185 1.20675 0.99847 0.91131 1.10946 1.17720 0.90357 0.86858 0.92742 1.45090 1.06255 1.04888 1.80609 1.21627 0.78305 0.99326 1.00545 1.21440 1.00534 0.91967 0.97552 0.92050 1.21718 0.97932 1.01863 0.97382 1.19072 0.86912 0.97367 0.97331 1.21156 0.91871 0.92456 1.50083 0.92617 1.25014 0.97071 0.96942 0.95398 1.69953 1.02325 1.30723 1.50437 0.86672 0.77641 0.85143 0.78629 1.20261 1.21301 1.20277 1.19140 0.91563 0.95233 1.11883 1.20626 0.99677 0.94304 1.01652 0.91413 0.91402 0.91901 0.87022 0.86605 0.86061 0.76702 0.92637 0.92593 0.95155 0.93457 0.91767 0.96308 0.96453 0.92922 0.91919 0.92381 0.91472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 9.60 36.01 0.35 -0.71 16 2 C -0.04 -0.54 5.88 -104.65 -0.62 -1.16 16 3 C -0.19 -2.32 9.70 -39.55 -0.38 -2.70 16 4 C -0.07 -0.95 10.04 -39.61 -0.40 -1.34 16 5 C -0.20 -2.99 9.31 -39.38 -0.37 -3.36 16 6 C 0.23 3.43 6.63 -83.78 -0.56 2.87 16 7 N -0.74 -11.22 5.36 -58.63 -0.31 -11.54 16 8 C 0.13 2.15 4.30 -4.04 -0.02 2.13 16 9 C -0.10 -1.88 2.37 -90.62 -0.22 -2.09 16 10 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 11 C -0.13 -2.39 8.88 37.16 0.33 -2.06 16 12 C 0.03 0.76 4.45 -27.88 -0.12 0.64 16 13 C -0.52 -14.16 8.41 -34.44 -0.29 -14.45 16 14 H 0.06 1.48 7.06 -52.49 -0.37 1.11 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 17 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 21 C -0.17 -2.32 5.90 -104.42 -0.62 -2.94 16 22 C -0.11 -1.16 9.16 36.00 0.33 -0.83 16 23 H 0.07 0.56 8.14 -51.94 -0.42 0.14 16 24 H 0.07 0.56 5.94 -51.93 -0.31 0.26 16 25 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 26 H 0.11 1.13 8.06 -52.49 -0.42 0.71 16 27 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 28 H 0.12 1.78 6.73 -52.49 -0.35 1.43 16 29 H 0.40 5.60 5.66 -40.82 -0.23 5.37 16 30 H 0.06 0.96 7.95 -51.93 -0.41 0.55 16 31 H 0.06 0.99 7.95 -51.93 -0.41 0.57 16 32 H 0.03 0.46 7.18 -51.93 -0.37 0.09 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.06 1.25 6.95 -51.93 -0.36 0.89 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.63 6.55 -51.93 -0.34 0.29 16 40 H 0.07 0.62 5.94 -51.93 -0.31 0.32 16 LS Contribution 318.86 15.07 4.81 4.81 Total: -1.00 -29.32 318.86 -8.87 -38.20 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -6.41 Total: 2.47 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: -2.67 Total: -24.49 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.42 Total: -37.35 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.32 -8.87 -38.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602495450.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.610 kcal (2) G-P(sol) polarization free energy of solvation -29.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds