Wall clock time and date at job start Thu Apr 9 2020 12:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38307 * 119.96565 * 2 1 4 4 C 1.38261 * 120.15029 * 180.02562 * 3 2 1 5 5 C 1.38125 * 120.07750 * 0.02562 * 4 3 2 6 6 C 1.38893 * 119.92196 * 359.97438 * 5 4 3 7 7 N 1.39680 * 120.07440 * 179.97438 * 6 5 4 8 8 C 1.46494 * 119.99734 * 0.02562 * 7 6 5 9 9 C 1.53010 * 109.46805 * 180.02562 * 8 7 6 10 10 H 1.08997 * 109.46832 * 305.00000 * 9 8 7 11 11 C 1.52998 * 109.46934 * 64.99655 * 9 8 7 12 12 C 1.52997 * 109.46726 * 184.99789 * 9 8 7 13 13 C 1.50705 * 109.46664 * 174.99727 * 12 9 8 14 14 H 1.07999 * 119.99900 * 0.02562 * 13 12 9 15 15 C 1.37876 * 119.99926 * 179.97438 * 13 12 9 16 16 N 1.31522 * 119.99967 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00138 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46791 * 60.00528 * 17 15 13 19 19 H 1.48500 * 109.46900 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47216 * 300.00620 * 17 15 13 21 21 C 1.38087 * 119.95959 * 179.97438 * 2 1 3 22 22 C 1.50696 * 120.03613 * 359.97438 * 21 2 1 23 23 H 1.08989 * 109.47406 * 89.99271 * 1 2 3 24 24 H 1.08995 * 109.47008 * 210.00406 * 1 2 3 25 25 H 1.09001 * 109.46501 * 329.99495 * 1 2 3 26 26 H 1.07998 * 119.92585 * 359.97438 * 3 2 1 27 27 H 1.07995 * 119.96543 * 179.97438 * 4 3 2 28 28 H 1.07995 * 120.04491 * 179.70058 * 5 4 3 29 29 H 0.97004 * 119.99805 * 179.97438 * 7 6 5 30 30 H 1.08999 * 109.46902 * 299.99655 * 8 7 6 31 31 H 1.08999 * 109.47607 * 60.00411 * 8 7 6 32 32 H 1.08993 * 109.47475 * 299.99890 * 11 9 8 33 33 H 1.08997 * 109.47079 * 60.00497 * 11 9 8 34 34 H 1.09004 * 109.46545 * 179.97438 * 11 9 8 35 35 H 1.08999 * 109.47368 * 294.99181 * 12 9 8 36 36 H 1.09002 * 109.47129 * 55.00273 * 12 9 8 37 37 H 0.97000 * 119.99720 * 179.97438 * 16 15 13 38 38 H 1.08992 * 109.47508 * 90.00582 * 22 21 2 39 39 H 1.09006 * 109.46870 * 210.00330 * 22 21 2 40 40 H 1.09004 * 109.47267 * 329.99985 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2026 -0.0005 5 6 4.2765 0.0096 -0.0016 6 6 3.5859 -1.1955 -0.0016 7 7 4.2866 -2.4038 -0.0032 8 6 5.7516 -2.4009 -0.0044 9 6 6.2644 -3.8425 -0.0067 10 1 5.8314 -4.3834 0.8347 11 6 5.8598 -4.5256 -1.3146 12 6 7.7893 -3.8415 0.1178 13 6 8.2842 -5.2598 0.2391 14 1 7.5814 -6.0798 0.2280 15 6 9.6343 -5.5105 0.3631 16 7 10.4901 -4.5120 0.3761 17 14 10.2478 -7.2685 0.5142 18 1 9.8496 -8.0371 -0.6924 19 1 11.7279 -7.2675 0.6349 20 1 9.6536 -7.8982 1.7206 21 6 2.1966 -1.1964 0.0005 22 6 1.4430 -2.5014 0.0017 23 1 -0.3633 0.0001 -1.0275 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3632 0.8900 0.5139 26 1 1.6561 2.1325 -0.0004 27 1 4.1168 2.1400 -0.0010 28 1 5.3564 0.0137 -0.0069 29 1 3.8032 -3.2448 -0.0029 30 1 6.1132 -1.8856 -0.8942 31 1 6.1147 -1.8872 0.8858 32 1 4.7735 -4.5262 -1.4033 33 1 6.2927 -3.9846 -2.1560 34 1 6.2255 -5.5524 -1.3164 35 1 8.2258 -3.3789 -0.7673 36 1 8.0811 -3.2778 1.0039 37 1 11.4399 -4.6884 0.4637 38 1 1.2610 -2.8168 -1.0256 39 1 2.0323 -3.2607 0.5159 40 1 0.4908 -2.3706 0.5158 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602495450.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:22:06 Heat of formation + Delta-G solvation = -19.410298 kcal Electronic energy + Delta-G solvation = -17470.822982 eV Core-core repulsion = 14862.415852 eV Total energy + Delta-G solvation = -2608.407130 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.71041 -38.20267 -35.71943 -34.15403 -34.07782 -31.20549 -28.93856 -27.98971 -27.51041 -26.74880 -24.75834 -22.16004 -21.52569 -20.69575 -18.57024 -17.88854 -17.12354 -16.55973 -16.14049 -15.99259 -15.29929 -14.98182 -14.76514 -14.34185 -14.23634 -13.94127 -13.71409 -13.57314 -13.40469 -13.33788 -12.84236 -12.78909 -12.59275 -12.53530 -12.27430 -12.09174 -11.98619 -11.68265 -11.58146 -11.18368 -11.05533 -10.79553 -10.54594 -9.38209 -8.21004 -8.18850 -6.28462 0.56152 0.78987 1.40341 1.42717 1.50408 2.40009 2.58573 2.99356 3.14980 3.96118 4.03938 4.08935 4.15142 4.27367 4.34486 4.38047 4.53389 4.64383 4.74097 4.77416 4.79350 4.87623 4.90514 4.94701 5.02208 5.05422 5.15956 5.22011 5.29508 5.42097 5.43826 5.49612 5.54415 5.72464 5.74134 5.84255 5.85819 6.08609 6.25140 6.48840 6.86327 6.91623 7.40047 8.93061 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.045636 B = 0.003946 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.403329 B = 7094.308098 C = 7558.676166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.051 4.051 3 C -0.190 4.190 4 C -0.081 4.081 5 C -0.227 4.227 6 C 0.206 3.794 7 N -0.739 5.739 8 C 0.143 3.857 9 C -0.085 4.085 10 H 0.062 0.938 11 C -0.124 4.124 12 C 0.035 3.965 13 C -0.532 4.532 14 H 0.064 0.936 15 C -0.001 4.001 16 N -0.935 5.935 17 Si 0.961 3.039 18 H -0.266 1.266 19 H -0.286 1.286 20 H -0.268 1.268 21 C -0.181 4.181 22 C -0.105 4.105 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.136 0.864 27 H 0.133 0.867 28 H 0.109 0.891 29 H 0.402 0.598 30 H 0.049 0.951 31 H 0.044 0.956 32 H 0.062 0.938 33 H 0.040 0.960 34 H 0.050 0.950 35 H -0.007 1.007 36 H -0.011 1.011 37 H 0.262 0.738 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.845 7.543 -1.419 21.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.051 4.051 3 C -0.210 4.210 4 C -0.100 4.100 5 C -0.250 4.250 6 C 0.101 3.899 7 N -0.369 5.369 8 C 0.018 3.982 9 C -0.104 4.104 10 H 0.081 0.919 11 C -0.181 4.181 12 C -0.003 4.003 13 C -0.570 4.570 14 H 0.082 0.918 15 C -0.199 4.199 16 N -0.575 5.575 17 Si 0.786 3.214 18 H -0.191 1.191 19 H -0.211 1.211 20 H -0.193 1.193 21 C -0.186 4.186 22 C -0.162 4.162 23 H 0.097 0.903 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.154 0.846 27 H 0.151 0.849 28 H 0.127 0.873 29 H 0.240 0.760 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.012 0.988 36 H 0.008 0.992 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -19.451 7.581 -1.409 20.924 hybrid contribution 1.151 -0.919 0.135 1.480 sum -18.300 6.661 -1.274 19.516 Atomic orbital electron populations 1.20894 0.89373 1.03641 1.03055 1.19876 0.97112 0.91781 0.96371 1.21014 0.93880 0.98079 1.08009 1.21080 0.94786 0.97240 0.96852 1.20792 0.99600 0.92183 1.12398 1.17942 0.91308 0.86499 0.94106 1.44817 1.04955 1.05512 1.81637 1.21214 0.79922 0.97271 0.99755 1.21205 0.96752 0.93816 0.98579 0.91939 1.21624 0.99958 1.00499 0.96027 1.18948 0.90677 0.95857 0.94778 1.21590 0.92341 0.93627 1.49398 0.91827 1.25950 0.97440 1.01423 0.95075 1.70096 1.02622 1.33147 1.51661 0.85555 0.76939 0.79745 0.79148 1.19137 1.21145 1.19260 1.19489 0.91012 0.96897 1.11189 1.20676 1.00154 0.92955 1.02378 0.90284 0.90452 0.90524 0.84618 0.84873 0.87257 0.76030 0.93289 0.93790 0.91901 0.94048 0.93108 0.98826 0.99220 0.92895 0.91141 0.92644 0.89612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.67 9.60 71.24 0.68 -0.99 16 2 C -0.05 -1.12 5.88 -19.88 -0.12 -1.24 16 3 C -0.19 -4.25 9.70 22.29 0.22 -4.04 16 4 C -0.08 -2.03 10.04 22.25 0.22 -1.81 16 5 C -0.23 -6.75 9.31 22.40 0.21 -6.55 16 6 C 0.21 6.07 6.63 38.21 0.25 6.32 16 7 N -0.74 -22.19 5.36 -339.41 -1.82 -24.01 16 8 C 0.14 5.03 4.30 86.38 0.37 5.40 16 9 C -0.08 -3.36 2.37 -10.79 -0.03 -3.38 16 10 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 11 C -0.12 -4.43 8.88 71.98 0.64 -3.79 16 12 C 0.03 1.81 4.45 29.85 0.13 1.94 16 13 C -0.53 -29.53 8.41 25.60 0.22 -29.32 16 14 H 0.06 3.36 7.06 -2.91 -0.02 3.34 16 15 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 16 N -0.93 -56.85 13.29 21.45 0.28 -56.56 16 17 Si 0.96 43.98 29.54 68.60 2.03 46.01 16 18 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 19 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 C -0.18 -4.54 5.90 -19.74 -0.12 -4.66 16 22 C -0.11 -2.04 9.16 71.23 0.65 -1.39 16 23 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.08 1.00 5.94 -2.39 -0.01 0.99 16 25 H 0.08 0.93 8.08 -2.39 -0.02 0.91 16 26 H 0.14 2.33 8.06 -2.91 -0.02 2.30 16 27 H 0.13 2.74 8.06 -2.91 -0.02 2.71 16 28 H 0.11 3.39 6.73 -2.91 -0.02 3.37 16 29 H 0.40 10.89 5.66 -92.70 -0.52 10.37 16 30 H 0.05 1.77 7.95 -2.39 -0.02 1.75 16 31 H 0.04 1.63 7.95 -2.39 -0.02 1.61 16 32 H 0.06 1.83 7.18 -2.39 -0.02 1.81 16 33 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.05 1.94 6.95 -2.39 -0.02 1.92 16 35 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 36 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 37 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 38 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.05 1.10 6.55 -2.38 -0.02 1.09 16 40 H 0.09 1.32 5.94 -2.38 -0.01 1.31 16 Total: -1.00 -63.69 318.86 4.78 -58.91 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 0.49 Total: 18.75 kcal Atomic # 6 Polarization: -46.91 SS G_CDS: 3.80 Total: -43.11 kcal Atomic # 7 Polarization: -79.04 SS G_CDS: -1.53 Total: -80.57 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -63.69 4.78 -58.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602495450.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.505 kcal (2) G-P(sol) polarization free energy of solvation -63.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds