Wall clock time and date at job start Thu Apr 9 2020 12:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38305 * 119.92663 * 2 1 4 4 C 1.38082 * 120.07290 * 180.02562 * 3 2 1 5 5 C 1.38924 * 119.92880 * 359.97364 * 4 3 2 6 6 N 1.39674 * 120.07538 * 179.97438 * 5 4 3 7 7 C 1.46497 * 120.00335 * 0.02562 * 6 5 4 8 8 C 1.52992 * 109.47408 * 179.97438 * 7 6 5 9 9 H 1.08998 * 109.46862 * 55.00859 * 8 7 6 10 10 C 1.52997 * 109.47482 * 295.00294 * 8 7 6 11 11 C 1.53006 * 109.47223 * 175.00006 * 8 7 6 12 12 C 1.50695 * 109.47196 * 185.00102 * 11 8 7 13 13 H 1.07999 * 120.00313 * 0.02562 * 12 11 8 14 14 C 1.37882 * 119.99880 * 179.97438 * 12 11 8 15 15 N 1.31508 * 120.00054 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99981 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47091 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46997 * 120.00139 * 16 14 12 19 19 H 1.48498 * 109.47334 * 240.00730 * 16 14 12 20 20 C 1.38891 * 119.85054 * 0.25540 * 5 4 3 21 21 C 1.38131 * 119.92333 * 359.51625 * 20 5 4 22 22 C 1.50695 * 119.96310 * 180.22728 * 21 20 5 23 23 H 1.09003 * 109.46737 * 90.00250 * 1 2 3 24 24 H 1.09004 * 109.47311 * 210.00039 * 1 2 3 25 25 H 1.08994 * 109.46979 * 330.00422 * 1 2 3 26 26 H 1.08001 * 119.96017 * 0.02562 * 3 2 1 27 27 H 1.07999 * 120.03446 * 179.97438 * 4 3 2 28 28 H 0.97008 * 119.99849 * 180.02562 * 6 5 4 29 29 H 1.09002 * 109.47031 * 59.99855 * 7 6 5 30 30 H 1.09006 * 109.47249 * 300.00691 * 7 6 5 31 31 H 1.09002 * 109.47153 * 59.99783 * 10 8 7 32 32 H 1.09001 * 109.46832 * 299.99974 * 10 8 7 33 33 H 1.09004 * 109.47261 * 179.97438 * 10 8 7 34 34 H 1.09007 * 109.47135 * 305.00448 * 11 8 7 35 35 H 1.08996 * 109.46945 * 64.99955 * 11 8 7 36 36 H 0.97003 * 120.00316 * 180.02562 * 15 14 12 37 37 H 1.08000 * 120.04185 * 179.71977 * 20 5 4 38 38 H 1.08994 * 109.47466 * 270.25514 * 22 21 20 39 39 H 1.09004 * 109.47131 * 30.25653 * 22 21 20 40 40 H 1.09006 * 109.46996 * 150.25211 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1986 0.0000 4 6 3.5779 1.2022 -0.0005 5 6 4.2741 0.0000 -0.0005 6 7 5.6708 -0.0001 -0.0016 7 6 6.4034 1.2686 -0.0022 8 6 7.9075 0.9890 -0.0027 9 1 8.1567 0.3430 -0.8445 10 6 8.2981 0.2967 1.3046 11 6 8.6715 2.3086 -0.1290 12 6 10.1464 2.0253 -0.2531 13 1 10.5032 1.0060 -0.2433 14 6 11.0403 3.0674 -0.3802 15 7 10.6058 4.3086 -0.3926 16 14 12.8685 2.7162 -0.5346 17 1 13.0959 1.2492 -0.4940 18 1 13.3696 3.2588 -1.8229 19 1 13.5932 3.3611 0.5896 20 6 3.5781 -1.2020 -0.0053 21 6 2.1968 -1.1984 0.0000 22 6 1.4407 -2.5019 -0.0001 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5137 26 1 1.6552 2.1329 0.0004 27 1 4.1160 2.1385 -0.0010 28 1 6.1558 -0.8402 -0.0020 29 1 6.1407 1.8402 0.8880 30 1 6.1393 1.8403 -0.8919 31 1 7.7538 -0.6434 1.3946 32 1 8.0489 0.9428 2.1464 33 1 9.3697 0.0971 1.3040 34 1 8.3286 2.8437 -1.0146 35 1 8.4919 2.9186 0.7562 36 1 11.2346 5.0417 -0.4824 37 1 4.1162 -2.1384 -0.0099 38 1 1.2584 -2.8162 -1.0277 39 1 2.0283 -3.2628 0.5138 40 1 0.4885 -2.3697 0.5139 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602495472.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:22:10 Heat of formation + Delta-G solvation = -7.058918 kcal Electronic energy + Delta-G solvation = -17213.605340 eV Core-core repulsion = 14605.733807 eV Total energy + Delta-G solvation = -2607.871534 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.56416 -36.93418 -34.46658 -32.45114 -32.11503 -30.69128 -27.68745 -26.95254 -25.94491 -24.92466 -22.83830 -21.98649 -19.92206 -19.28797 -16.77013 -16.47091 -15.76120 -15.06082 -14.62615 -14.51490 -14.25884 -13.94227 -13.61483 -13.01367 -12.91495 -12.79917 -12.57610 -12.33575 -12.24531 -11.90609 -11.70572 -11.45838 -11.08557 -10.93619 -10.88383 -10.71016 -10.40483 -10.33603 -9.93997 -9.49121 -9.31233 -9.05160 -8.56323 -8.39022 -7.04918 -6.03292 -4.05124 1.58406 1.78128 3.28704 3.36543 3.39856 3.78293 4.00089 4.43565 4.89415 4.96909 5.17933 5.22455 5.32711 5.39882 5.47092 5.55133 5.55983 5.66790 5.69019 5.79843 5.84649 5.89266 5.92097 6.10914 6.21105 6.21352 6.37738 6.42452 6.56183 6.63009 6.82940 6.87593 6.99068 7.02227 7.11253 7.60855 7.64557 7.74517 7.95518 8.03527 8.38048 9.00816 9.58757 11.08168 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.053344 B = 0.003573 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.769084 B = 7834.849006 C = 8215.279293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.161 4.161 3 C -0.067 4.067 4 C -0.201 4.201 5 C 0.225 3.775 6 N -0.741 5.741 7 C 0.126 3.874 8 C -0.096 4.096 9 H 0.061 0.939 10 C -0.132 4.132 11 C 0.030 3.970 12 C -0.516 4.516 13 H 0.057 0.943 14 C 0.056 3.944 15 N -0.895 5.895 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.203 4.203 21 C -0.042 4.042 22 C -0.116 4.116 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.116 0.884 27 H 0.121 0.879 28 H 0.397 0.603 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.030 0.970 32 H 0.046 0.954 33 H 0.063 0.937 34 H 0.017 0.983 35 H 0.019 0.981 36 H 0.260 0.740 37 H 0.115 0.885 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.334 -10.063 1.288 20.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.164 4.164 3 C -0.086 4.086 4 C -0.224 4.224 5 C 0.119 3.881 6 N -0.369 5.369 7 C 0.003 3.997 8 C -0.115 4.115 9 H 0.080 0.920 10 C -0.189 4.189 11 C -0.008 4.008 12 C -0.554 4.554 13 H 0.075 0.925 14 C -0.145 4.145 15 N -0.534 5.534 16 Si 0.719 3.281 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.226 4.226 21 C -0.042 4.042 22 C -0.172 4.172 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.134 0.866 27 H 0.139 0.861 28 H 0.231 0.769 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.035 0.965 35 H 0.037 0.963 36 H 0.070 0.930 37 H 0.133 0.867 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.157 -9.677 1.279 19.739 hybrid contribution 1.389 -0.265 -0.118 1.419 sum -15.767 -9.942 1.160 18.676 Atomic orbital electron populations 1.20677 0.92026 1.01940 1.01415 1.19394 0.95409 0.92593 1.08960 1.20719 0.93430 0.97066 0.97377 1.20679 0.94243 0.96743 1.10742 1.17889 0.84055 0.93662 0.92488 1.45007 1.02100 1.08967 1.80801 1.21614 0.92744 0.84858 1.00502 1.21439 0.91319 1.01163 0.97586 0.92012 1.21718 1.01715 0.98095 0.97359 1.19084 0.94310 0.90037 0.97332 1.21230 0.91686 0.92717 1.49774 0.92507 1.25018 0.98895 0.95146 0.95429 1.69967 1.34456 0.98386 1.50608 0.86559 0.85577 0.78364 0.77644 1.19772 1.21037 1.21036 1.20382 0.93593 0.96157 1.12470 1.19383 0.92839 0.94498 0.97503 1.20843 0.99953 0.94392 1.02044 0.92218 0.91945 0.92380 0.86581 0.86054 0.76875 0.92684 0.92619 0.95116 0.93476 0.91780 0.96454 0.96308 0.93037 0.86681 0.91391 0.91929 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.96 9.60 36.01 0.35 -0.61 16 2 C -0.16 -1.97 5.88 -104.58 -0.62 -2.59 16 3 C -0.07 -0.87 9.69 -39.61 -0.38 -1.26 16 4 C -0.20 -2.95 9.31 -39.38 -0.37 -3.32 16 5 C 0.22 3.34 6.65 -83.79 -0.56 2.78 16 6 N -0.74 -11.18 5.46 -58.64 -0.32 -11.51 16 7 C 0.13 2.16 4.30 -4.05 -0.02 2.14 16 8 C -0.10 -1.88 2.37 -90.62 -0.22 -2.10 16 9 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 10 C -0.13 -2.39 8.88 37.16 0.33 -2.06 16 11 C 0.03 0.74 4.45 -27.88 -0.12 0.62 16 12 C -0.52 -14.13 8.41 -34.44 -0.29 -14.42 16 13 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 14 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 16 Si 0.89 21.42 29.54 -169.99 -5.02 16.39 16 17 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 20 C -0.20 -2.72 9.55 -39.38 -0.38 -3.10 16 21 C -0.04 -0.51 5.88 -104.65 -0.62 -1.12 16 22 C -0.12 -1.06 9.60 36.00 0.35 -0.71 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.50 5.94 -51.93 -0.31 0.19 16 25 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 26 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 27 H 0.12 1.78 6.74 -52.49 -0.35 1.42 16 28 H 0.40 5.52 7.67 -40.82 -0.31 5.20 16 29 H 0.05 0.95 7.95 -51.93 -0.41 0.54 16 30 H 0.06 0.98 7.95 -51.93 -0.41 0.57 16 31 H 0.03 0.47 7.18 -51.93 -0.37 0.10 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 1.25 6.95 -51.93 -0.36 0.89 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 40 H 0.07 0.54 5.94 -51.93 -0.31 0.23 16 LS Contribution 322.44 15.07 4.86 4.86 Total: -1.00 -29.38 322.44 -8.95 -38.33 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -6.57 Total: 1.99 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: -2.64 Total: -24.26 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.42 Total: -37.32 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.38 -8.95 -38.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602495472.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.270 kcal (2) G-P(sol) polarization free energy of solvation -29.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds