Wall clock time and date at job start Thu Apr 9 2020 12:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38305 * 119.92663 * 2 1 4 4 C 1.38082 * 120.07290 * 180.02562 * 3 2 1 5 5 C 1.38924 * 119.92880 * 359.97364 * 4 3 2 6 6 N 1.39674 * 120.07538 * 179.97438 * 5 4 3 7 7 C 1.46497 * 120.00335 * 0.02562 * 6 5 4 8 8 C 1.52992 * 109.47408 * 179.97438 * 7 6 5 9 9 H 1.08998 * 109.46862 * 55.00859 * 8 7 6 10 10 C 1.52997 * 109.47482 * 295.00294 * 8 7 6 11 11 C 1.53006 * 109.47223 * 175.00006 * 8 7 6 12 12 C 1.50695 * 109.47196 * 185.00102 * 11 8 7 13 13 H 1.07999 * 120.00313 * 0.02562 * 12 11 8 14 14 C 1.37882 * 119.99880 * 179.97438 * 12 11 8 15 15 N 1.31508 * 120.00054 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99981 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47091 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46997 * 120.00139 * 16 14 12 19 19 H 1.48498 * 109.47334 * 240.00730 * 16 14 12 20 20 C 1.38891 * 119.85054 * 0.25540 * 5 4 3 21 21 C 1.38131 * 119.92333 * 359.51625 * 20 5 4 22 22 C 1.50695 * 119.96310 * 180.22728 * 21 20 5 23 23 H 1.09003 * 109.46737 * 90.00250 * 1 2 3 24 24 H 1.09004 * 109.47311 * 210.00039 * 1 2 3 25 25 H 1.08994 * 109.46979 * 330.00422 * 1 2 3 26 26 H 1.08001 * 119.96017 * 0.02562 * 3 2 1 27 27 H 1.07999 * 120.03446 * 179.97438 * 4 3 2 28 28 H 0.97008 * 119.99849 * 180.02562 * 6 5 4 29 29 H 1.09002 * 109.47031 * 59.99855 * 7 6 5 30 30 H 1.09006 * 109.47249 * 300.00691 * 7 6 5 31 31 H 1.09002 * 109.47153 * 59.99783 * 10 8 7 32 32 H 1.09001 * 109.46832 * 299.99974 * 10 8 7 33 33 H 1.09004 * 109.47261 * 179.97438 * 10 8 7 34 34 H 1.09007 * 109.47135 * 305.00448 * 11 8 7 35 35 H 1.08996 * 109.46945 * 64.99955 * 11 8 7 36 36 H 0.97003 * 120.00316 * 180.02562 * 15 14 12 37 37 H 1.08000 * 120.04185 * 179.71977 * 20 5 4 38 38 H 1.08994 * 109.47466 * 270.25514 * 22 21 20 39 39 H 1.09004 * 109.47131 * 30.25653 * 22 21 20 40 40 H 1.09006 * 109.46996 * 150.25211 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1986 0.0000 4 6 3.5779 1.2022 -0.0005 5 6 4.2741 0.0000 -0.0005 6 7 5.6708 -0.0001 -0.0016 7 6 6.4034 1.2686 -0.0022 8 6 7.9075 0.9890 -0.0027 9 1 8.1567 0.3430 -0.8445 10 6 8.2981 0.2967 1.3046 11 6 8.6715 2.3086 -0.1290 12 6 10.1464 2.0253 -0.2531 13 1 10.5032 1.0060 -0.2433 14 6 11.0403 3.0674 -0.3802 15 7 10.6058 4.3086 -0.3926 16 14 12.8685 2.7162 -0.5346 17 1 13.0959 1.2492 -0.4940 18 1 13.3696 3.2588 -1.8229 19 1 13.5932 3.3611 0.5896 20 6 3.5781 -1.2020 -0.0053 21 6 2.1968 -1.1984 0.0000 22 6 1.4407 -2.5019 -0.0001 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5137 26 1 1.6552 2.1329 0.0004 27 1 4.1160 2.1385 -0.0010 28 1 6.1558 -0.8402 -0.0020 29 1 6.1407 1.8402 0.8880 30 1 6.1393 1.8403 -0.8919 31 1 7.7538 -0.6434 1.3946 32 1 8.0489 0.9428 2.1464 33 1 9.3697 0.0971 1.3040 34 1 8.3286 2.8437 -1.0146 35 1 8.4919 2.9186 0.7562 36 1 11.2346 5.0417 -0.4824 37 1 4.1162 -2.1384 -0.0099 38 1 1.2584 -2.8162 -1.0277 39 1 2.0283 -3.2628 0.5138 40 1 0.4885 -2.3697 0.5139 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602495472.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:22:10 Heat of formation + Delta-G solvation = -22.054210 kcal Electronic energy + Delta-G solvation = -17214.255585 eV Core-core repulsion = 14605.733807 eV Total energy + Delta-G solvation = -2608.521778 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.59225 -38.32268 -35.95155 -34.25593 -33.12393 -31.87312 -29.05764 -28.45106 -27.12124 -26.14687 -24.60790 -23.02122 -21.10048 -20.78440 -18.56941 -17.86339 -16.96334 -16.50794 -16.10333 -15.96246 -15.29900 -15.00308 -14.78996 -14.37559 -14.28036 -14.01118 -13.81083 -13.48820 -13.38398 -13.21050 -12.92615 -12.79569 -12.64226 -12.55888 -12.28317 -12.04351 -11.94155 -11.66701 -11.62316 -11.18083 -11.03820 -10.61984 -10.56125 -9.55528 -8.19508 -8.16151 -6.28804 0.56866 0.75833 1.39439 1.40165 1.52626 2.39574 2.58714 2.98085 3.14541 3.97114 4.05225 4.08716 4.15387 4.28488 4.34874 4.43945 4.53190 4.60532 4.73368 4.79165 4.81754 4.89398 4.94503 4.96847 5.05553 5.09783 5.18240 5.27269 5.29893 5.35663 5.42383 5.49879 5.53703 5.64723 5.74092 5.84301 5.91660 6.08635 6.25021 6.49094 6.86503 6.92555 7.39747 8.92842 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.053344 B = 0.003573 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.769084 B = 7834.849006 C = 8215.279293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.164 4.164 3 C -0.077 4.077 4 C -0.224 4.224 5 C 0.203 3.797 6 N -0.740 5.740 7 C 0.144 3.856 8 C -0.085 4.085 9 H 0.063 0.937 10 C -0.124 4.124 11 C 0.034 3.966 12 C -0.529 4.529 13 H 0.063 0.937 14 C -0.002 4.002 15 N -0.934 5.934 16 Si 0.961 3.039 17 H -0.261 1.261 18 H -0.281 1.281 19 H -0.280 1.280 20 C -0.208 4.208 21 C -0.048 4.048 22 C -0.114 4.114 23 H 0.069 0.931 24 H 0.077 0.923 25 H 0.065 0.935 26 H 0.132 0.868 27 H 0.110 0.890 28 H 0.403 0.597 29 H 0.048 0.952 30 H 0.044 0.956 31 H 0.063 0.937 32 H 0.040 0.960 33 H 0.049 0.951 34 H -0.010 1.010 35 H -0.006 1.006 36 H 0.262 0.738 37 H 0.129 0.871 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.360 -12.212 1.436 22.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.166 4.166 3 C -0.095 4.095 4 C -0.246 4.246 5 C 0.099 3.901 6 N -0.370 5.370 7 C 0.020 3.980 8 C -0.104 4.104 9 H 0.081 0.919 10 C -0.181 4.181 11 C -0.003 4.003 12 C -0.567 4.567 13 H 0.081 0.919 14 C -0.199 4.199 15 N -0.575 5.575 16 Si 0.786 3.214 17 H -0.185 1.185 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.231 4.231 21 C -0.049 4.049 22 C -0.170 4.170 23 H 0.087 0.913 24 H 0.096 0.904 25 H 0.084 0.916 26 H 0.150 0.850 27 H 0.128 0.872 28 H 0.239 0.761 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.008 0.992 35 H 0.012 0.988 36 H 0.071 0.929 37 H 0.147 0.853 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -18.210 -11.854 1.429 21.775 hybrid contribution 1.581 0.406 -0.173 1.642 sum -16.628 -11.448 1.256 20.227 Atomic orbital electron populations 1.20736 0.89687 1.03153 1.02378 1.19834 0.97225 0.92209 1.07333 1.20985 0.92925 0.98446 0.97189 1.20783 0.95253 0.96474 1.12121 1.18070 0.83735 0.94430 0.93834 1.44734 1.02339 1.08085 1.81816 1.21198 0.91280 0.85850 0.99722 1.21206 0.92284 0.98287 0.98607 0.91900 1.21625 1.01163 0.99301 0.96018 1.18960 0.94361 0.92221 0.94796 1.21643 0.92942 0.93038 1.49117 0.91861 1.25948 1.03954 0.94920 0.95128 1.70102 1.36201 0.99435 1.51779 0.85448 0.79519 0.78767 0.77623 1.18479 1.20640 1.20584 1.20630 0.94356 0.96059 1.12052 1.19829 0.92693 0.96074 0.96307 1.20901 1.00308 0.92757 1.03053 0.91256 0.90398 0.91596 0.85046 0.87215 0.76119 0.93327 0.93800 0.91828 0.94054 0.93178 0.99197 0.98810 0.92898 0.85306 0.90325 0.91114 0.89834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.59 9.60 71.24 0.68 -0.91 16 2 C -0.16 -3.68 5.88 -19.84 -0.12 -3.79 16 3 C -0.08 -1.94 9.69 22.25 0.22 -1.73 16 4 C -0.22 -6.63 9.31 22.40 0.21 -6.42 16 5 C 0.20 5.96 6.65 38.21 0.25 6.22 16 6 N -0.74 -22.09 5.46 -339.43 -1.85 -23.95 16 7 C 0.14 5.05 4.30 86.38 0.37 5.42 16 8 C -0.08 -3.37 2.37 -10.79 -0.03 -3.40 16 9 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 10 C -0.12 -4.43 8.88 71.98 0.64 -3.79 16 11 C 0.03 1.77 4.45 29.85 0.13 1.90 16 12 C -0.53 -29.45 8.41 25.60 0.22 -29.24 16 13 H 0.06 3.37 7.06 -2.91 -0.02 3.35 16 14 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 15 N -0.93 -56.81 13.29 21.45 0.28 -56.53 16 16 Si 0.96 44.11 29.54 68.60 2.03 46.13 16 17 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 18 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 20 C -0.21 -5.26 9.55 22.40 0.21 -5.05 16 21 C -0.05 -1.08 5.88 -19.88 -0.12 -1.19 16 22 C -0.11 -1.71 9.60 71.23 0.68 -1.02 16 23 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.08 0.97 5.94 -2.38 -0.01 0.96 16 25 H 0.07 0.92 8.08 -2.39 -0.02 0.91 16 26 H 0.13 2.77 8.06 -2.91 -0.02 2.75 16 27 H 0.11 3.39 6.74 -2.91 -0.02 3.37 16 28 H 0.40 10.73 7.67 -92.70 -0.71 10.02 16 29 H 0.05 1.75 7.95 -2.39 -0.02 1.73 16 30 H 0.04 1.62 7.95 -2.38 -0.02 1.60 16 31 H 0.06 1.85 7.18 -2.39 -0.02 1.83 16 32 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.05 1.92 6.95 -2.38 -0.02 1.90 16 34 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 35 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 36 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 37 H 0.13 2.80 8.06 -2.91 -0.02 2.78 16 38 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.07 0.96 8.09 -2.38 -0.02 0.94 16 40 H 0.08 1.00 5.94 -2.38 -0.01 0.99 16 Total: -1.00 -63.74 322.44 4.58 -59.16 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.30 Total: 17.82 kcal Atomic # 6 Polarization: -46.47 SS G_CDS: 3.82 Total: -42.65 kcal Atomic # 7 Polarization: -78.91 SS G_CDS: -1.57 Total: -80.47 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -63.74 4.58 -59.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602495472.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.108 kcal (2) G-P(sol) polarization free energy of solvation -63.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds