Wall clock time and date at job start Thu Apr 9 2020 12:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38303 * 119.92617 * 2 1 4 4 C 1.38081 * 120.07488 * 180.02562 * 3 2 1 5 5 C 1.38927 * 119.92567 * 359.97438 * 4 3 2 6 6 N 1.39670 * 120.07378 * 179.97438 * 5 4 3 7 7 C 1.46497 * 120.00372 * 359.97438 * 6 5 4 8 8 C 1.52999 * 109.47479 * 179.97438 * 7 6 5 9 9 H 1.08999 * 109.47296 * 305.00360 * 8 7 6 10 10 C 1.52996 * 109.47239 * 65.00221 * 8 7 6 11 11 C 1.52999 * 109.47323 * 185.00169 * 8 7 6 12 12 C 1.50702 * 109.47522 * 175.00325 * 11 8 7 13 13 H 1.08002 * 119.99446 * 359.97438 * 12 11 8 14 14 C 1.37871 * 120.00072 * 180.02562 * 12 11 8 15 15 N 1.31516 * 119.99826 * 179.72119 * 14 12 11 16 16 Si 1.86800 * 120.00406 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.46758 * 269.72576 * 16 14 12 18 18 H 1.48499 * 109.47026 * 29.72423 * 16 14 12 19 19 H 1.48496 * 109.47474 * 149.72459 * 16 14 12 20 20 C 1.38886 * 119.85079 * 0.24698 * 5 4 3 21 21 C 1.38126 * 119.92450 * 359.51763 * 20 5 4 22 22 C 1.50701 * 119.96326 * 180.23244 * 21 20 5 23 23 H 1.09002 * 109.46928 * 89.99966 * 1 2 3 24 24 H 1.09000 * 109.47404 * 209.99638 * 1 2 3 25 25 H 1.09006 * 109.47202 * 330.00159 * 1 2 3 26 26 H 1.08007 * 119.96011 * 0.02562 * 3 2 1 27 27 H 1.08009 * 120.03456 * 179.97438 * 4 3 2 28 28 H 0.97005 * 120.00373 * 179.97438 * 6 5 4 29 29 H 1.09004 * 109.47078 * 59.99948 * 7 6 5 30 30 H 1.08999 * 109.47478 * 300.00426 * 7 6 5 31 31 H 1.09007 * 109.47198 * 59.99899 * 10 8 7 32 32 H 1.09001 * 109.47667 * 179.97438 * 10 8 7 33 33 H 1.09008 * 109.47037 * 300.00381 * 10 8 7 34 34 H 1.09000 * 109.47527 * 54.99924 * 11 8 7 35 35 H 1.09001 * 109.47054 * 295.00014 * 11 8 7 36 36 H 0.96999 * 120.00128 * 180.27192 * 15 14 12 37 37 H 1.08003 * 120.03792 * 179.73048 * 20 5 4 38 38 H 1.09007 * 109.47098 * 270.25318 * 22 21 20 39 39 H 1.08992 * 109.47241 * 30.25640 * 22 21 20 40 40 H 1.09001 * 109.47273 * 150.25709 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1986 0.0000 4 6 3.5778 1.2022 -0.0005 5 6 4.2740 0.0000 -0.0005 6 7 5.6707 0.0000 -0.0016 7 6 6.4032 1.2686 -0.0033 8 6 7.9075 0.9891 -0.0036 9 1 8.1573 0.3441 0.8388 10 6 8.2970 0.2951 -1.3103 11 6 8.6715 2.3088 0.1204 12 6 10.1466 2.0257 0.2436 13 1 10.5033 1.0064 0.2348 14 6 11.0405 3.0679 0.3686 15 7 12.3272 2.8206 0.4816 16 14 10.4234 4.8310 0.3846 17 1 10.3941 5.3577 -1.0036 18 1 9.0543 4.8710 0.9582 19 1 11.3312 5.6658 1.2117 20 6 3.5780 -1.2019 -0.0052 21 6 2.1967 -1.1983 0.0003 22 6 1.4407 -2.5019 0.0005 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.6551 2.1329 0.0004 27 1 4.1160 2.1387 -0.0010 28 1 6.1558 -0.8401 -0.0012 29 1 6.1406 1.8410 0.8864 30 1 6.1392 1.8395 -0.8935 31 1 8.0471 0.9402 -2.1528 32 1 9.3687 0.0963 -1.3107 33 1 7.7526 -0.6451 -1.3987 34 1 8.3293 2.8451 1.0055 35 1 8.4912 2.9176 -0.7656 36 1 12.9558 3.5536 0.5735 37 1 4.1162 -2.1383 -0.0096 38 1 1.2582 -2.8164 -1.0271 39 1 2.0282 -3.2626 0.5144 40 1 0.4885 -2.3697 0.5144 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602495473.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:22:12 Heat of formation + Delta-G solvation = -3.320253 kcal Electronic energy + Delta-G solvation = -17266.087090 eV Core-core repulsion = 14658.377677 eV Total energy + Delta-G solvation = -2607.709413 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.62706 -37.04681 -34.55636 -32.44768 -32.15983 -30.83121 -27.91739 -27.37186 -26.00469 -24.97287 -22.59011 -21.96733 -19.94170 -19.33045 -17.05705 -16.61915 -15.90847 -15.12630 -14.81834 -14.35865 -14.22055 -13.92369 -13.70774 -13.12270 -13.03969 -12.84486 -12.78315 -12.43503 -12.28606 -11.98256 -11.85444 -11.66101 -11.15043 -11.09902 -10.88122 -10.77773 -10.52884 -10.01554 -9.79918 -9.65923 -9.53642 -9.14885 -8.61900 -8.56640 -7.11821 -6.06951 -4.04975 1.52672 1.72244 3.28730 3.36647 3.39537 3.70371 3.94226 4.42674 4.84584 4.91652 5.13668 5.16901 5.26222 5.34502 5.42299 5.43971 5.49688 5.57127 5.62860 5.75949 5.78421 5.80627 5.84823 6.03765 6.11428 6.15297 6.28728 6.31940 6.49631 6.56739 6.67222 6.81100 6.82276 6.97803 7.03780 7.18581 7.35125 7.56778 7.75996 7.96391 8.50363 8.97315 9.55313 11.06297 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.043401 B = 0.003894 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.984499 B = 7188.450295 C = 7699.976968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.160 4.160 3 C -0.068 4.068 4 C -0.202 4.202 5 C 0.224 3.776 6 N -0.741 5.741 7 C 0.124 3.876 8 C -0.087 4.087 9 H 0.068 0.932 10 C -0.133 4.133 11 C -0.006 4.006 12 C -0.517 4.517 13 H 0.074 0.926 14 C 0.066 3.934 15 N -0.904 5.904 16 Si 0.878 3.122 17 H -0.277 1.277 18 H -0.265 1.265 19 H -0.288 1.288 20 C -0.202 4.202 21 C -0.041 4.041 22 C -0.116 4.116 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.116 0.884 27 H 0.120 0.880 28 H 0.398 0.602 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.045 0.955 32 H 0.069 0.931 33 H 0.033 0.967 34 H 0.017 0.983 35 H 0.014 0.986 36 H 0.263 0.737 37 H 0.116 0.884 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.626 -6.756 -1.530 22.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.163 4.163 3 C -0.086 4.086 4 C -0.225 4.225 5 C 0.119 3.881 6 N -0.369 5.369 7 C 0.001 3.999 8 C -0.106 4.106 9 H 0.086 0.914 10 C -0.191 4.191 11 C -0.044 4.044 12 C -0.554 4.554 13 H 0.092 0.908 14 C -0.135 4.135 15 N -0.543 5.543 16 Si 0.706 3.294 17 H -0.203 1.203 18 H -0.190 1.190 19 H -0.214 1.214 20 C -0.224 4.224 21 C -0.042 4.042 22 C -0.173 4.173 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.134 0.866 27 H 0.138 0.862 28 H 0.233 0.767 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.052 0.948 34 H 0.035 0.965 35 H 0.032 0.968 36 H 0.073 0.927 37 H 0.134 0.866 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -21.335 -6.464 -1.508 22.344 hybrid contribution 0.202 0.772 -0.002 0.798 sum -21.133 -5.692 -1.510 21.938 Atomic orbital electron populations 1.20681 0.91989 1.01985 1.01440 1.19400 0.95442 0.92585 1.08827 1.20714 0.93415 0.97076 0.97424 1.20656 0.94246 0.96654 1.10935 1.17877 0.83988 0.93681 0.92569 1.44949 1.02121 1.08881 1.80913 1.21624 0.92760 0.85133 1.00429 1.21242 0.90918 1.00149 0.98317 0.91374 1.21732 1.02295 0.98189 0.96865 1.19566 0.96331 0.92119 0.96373 1.21086 0.89101 0.95157 1.50103 0.90832 1.25021 0.94756 0.99094 0.94629 1.69909 1.01591 1.32177 1.50576 0.86801 0.79165 0.85130 0.78331 1.20308 1.19012 1.21399 1.20391 0.93597 0.96190 1.12262 1.19395 0.92843 0.94531 0.97393 1.20849 0.99974 0.94369 1.02081 0.92193 0.91893 0.92373 0.86601 0.86180 0.76710 0.92670 0.92692 0.93538 0.91248 0.94842 0.96476 0.96811 0.92729 0.86588 0.91356 0.91867 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.92 9.60 36.01 0.35 -0.58 16 2 C -0.16 -1.89 5.88 -104.59 -0.62 -2.50 16 3 C -0.07 -0.84 9.69 -39.62 -0.38 -1.22 16 4 C -0.20 -2.82 9.31 -39.38 -0.37 -3.19 16 5 C 0.22 3.19 6.65 -83.79 -0.56 2.64 16 6 N -0.74 -10.68 5.46 -58.64 -0.32 -11.00 16 7 C 0.12 1.99 4.30 -4.04 -0.02 1.98 16 8 C -0.09 -1.64 2.37 -90.62 -0.22 -1.85 16 9 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 10 C -0.13 -2.38 8.88 37.16 0.33 -2.05 16 11 C -0.01 -0.14 3.52 -27.88 -0.10 -0.24 16 12 C -0.52 -14.28 8.96 -34.44 -0.31 -14.59 16 13 H 0.07 2.18 7.30 -52.49 -0.38 1.80 16 14 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 15 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 16 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 18 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 C -0.20 -2.60 9.55 -39.38 -0.38 -2.98 16 21 C -0.04 -0.48 5.88 -104.65 -0.62 -1.10 16 22 C -0.12 -1.02 9.60 36.01 0.35 -0.68 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.49 5.94 -51.93 -0.31 0.18 16 25 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 26 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 27 H 0.12 1.65 6.74 -52.48 -0.35 1.29 16 28 H 0.40 5.32 7.67 -40.82 -0.31 5.01 16 29 H 0.06 0.90 7.95 -51.93 -0.41 0.48 16 30 H 0.05 0.88 7.95 -51.93 -0.41 0.47 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 1.39 6.95 -51.93 -0.36 1.03 16 33 H 0.03 0.50 7.18 -51.92 -0.37 0.13 16 34 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 35 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 36 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 40 H 0.07 0.52 5.94 -51.93 -0.31 0.21 16 LS Contribution 318.83 15.07 4.80 4.80 Total: -1.00 -29.89 318.83 -8.58 -38.46 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -6.54 Total: 2.29 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: -2.63 Total: -24.55 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.45 Total: -37.83 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.89 -8.58 -38.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602495473.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.142 kcal (2) G-P(sol) polarization free energy of solvation -29.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds