Wall clock time and date at job start Thu Apr 9 2020 12:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38303 * 119.92617 * 2 1 4 4 C 1.38081 * 120.07488 * 180.02562 * 3 2 1 5 5 C 1.38927 * 119.92567 * 359.97438 * 4 3 2 6 6 N 1.39670 * 120.07378 * 179.97438 * 5 4 3 7 7 C 1.46497 * 120.00372 * 359.97438 * 6 5 4 8 8 C 1.52999 * 109.47479 * 179.97438 * 7 6 5 9 9 H 1.08999 * 109.47296 * 305.00360 * 8 7 6 10 10 C 1.52996 * 109.47239 * 65.00221 * 8 7 6 11 11 C 1.52999 * 109.47323 * 185.00169 * 8 7 6 12 12 C 1.50702 * 109.47522 * 175.00325 * 11 8 7 13 13 H 1.08002 * 119.99446 * 359.97438 * 12 11 8 14 14 C 1.37871 * 120.00072 * 180.02562 * 12 11 8 15 15 N 1.31516 * 119.99826 * 179.72119 * 14 12 11 16 16 Si 1.86800 * 120.00406 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.46758 * 269.72576 * 16 14 12 18 18 H 1.48499 * 109.47026 * 29.72423 * 16 14 12 19 19 H 1.48496 * 109.47474 * 149.72459 * 16 14 12 20 20 C 1.38886 * 119.85079 * 0.24698 * 5 4 3 21 21 C 1.38126 * 119.92450 * 359.51763 * 20 5 4 22 22 C 1.50701 * 119.96326 * 180.23244 * 21 20 5 23 23 H 1.09002 * 109.46928 * 89.99966 * 1 2 3 24 24 H 1.09000 * 109.47404 * 209.99638 * 1 2 3 25 25 H 1.09006 * 109.47202 * 330.00159 * 1 2 3 26 26 H 1.08007 * 119.96011 * 0.02562 * 3 2 1 27 27 H 1.08009 * 120.03456 * 179.97438 * 4 3 2 28 28 H 0.97005 * 120.00373 * 179.97438 * 6 5 4 29 29 H 1.09004 * 109.47078 * 59.99948 * 7 6 5 30 30 H 1.08999 * 109.47478 * 300.00426 * 7 6 5 31 31 H 1.09007 * 109.47198 * 59.99899 * 10 8 7 32 32 H 1.09001 * 109.47667 * 179.97438 * 10 8 7 33 33 H 1.09008 * 109.47037 * 300.00381 * 10 8 7 34 34 H 1.09000 * 109.47527 * 54.99924 * 11 8 7 35 35 H 1.09001 * 109.47054 * 295.00014 * 11 8 7 36 36 H 0.96999 * 120.00128 * 180.27192 * 15 14 12 37 37 H 1.08003 * 120.03792 * 179.73048 * 20 5 4 38 38 H 1.09007 * 109.47098 * 270.25318 * 22 21 20 39 39 H 1.08992 * 109.47241 * 30.25640 * 22 21 20 40 40 H 1.09001 * 109.47273 * 150.25709 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1986 0.0000 4 6 3.5778 1.2022 -0.0005 5 6 4.2740 0.0000 -0.0005 6 7 5.6707 0.0000 -0.0016 7 6 6.4032 1.2686 -0.0033 8 6 7.9075 0.9891 -0.0036 9 1 8.1573 0.3441 0.8388 10 6 8.2970 0.2951 -1.3103 11 6 8.6715 2.3088 0.1204 12 6 10.1466 2.0257 0.2436 13 1 10.5033 1.0064 0.2348 14 6 11.0405 3.0679 0.3686 15 7 12.3272 2.8206 0.4816 16 14 10.4234 4.8310 0.3846 17 1 10.3941 5.3577 -1.0036 18 1 9.0543 4.8710 0.9582 19 1 11.3312 5.6658 1.2117 20 6 3.5780 -1.2019 -0.0052 21 6 2.1967 -1.1983 0.0003 22 6 1.4407 -2.5019 0.0005 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.6551 2.1329 0.0004 27 1 4.1160 2.1387 -0.0010 28 1 6.1558 -0.8401 -0.0012 29 1 6.1406 1.8410 0.8864 30 1 6.1392 1.8395 -0.8935 31 1 8.0471 0.9402 -2.1528 32 1 9.3687 0.0963 -1.3107 33 1 7.7526 -0.6451 -1.3987 34 1 8.3293 2.8451 1.0055 35 1 8.4912 2.9176 -0.7656 36 1 12.9558 3.5536 0.5735 37 1 4.1162 -2.1383 -0.0096 38 1 1.2582 -2.8164 -1.0271 39 1 2.0282 -3.2626 0.5144 40 1 0.4885 -2.3697 0.5144 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602495473.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:22:11 Heat of formation + Delta-G solvation = -19.442352 kcal Electronic energy + Delta-G solvation = -17266.786197 eV Core-core repulsion = 14658.377677 eV Total energy + Delta-G solvation = -2608.408520 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.58707 -38.35682 -35.94839 -34.29454 -33.12522 -31.96847 -29.51638 -28.50225 -27.11134 -26.08835 -24.25777 -22.99195 -21.03842 -20.79413 -19.00199 -17.83371 -17.02062 -16.39297 -16.01756 -15.97973 -15.17118 -15.10684 -15.03386 -14.50126 -14.32684 -14.09650 -13.77000 -13.51718 -13.49148 -13.23254 -12.94606 -12.86673 -12.63342 -12.51740 -12.23284 -11.96969 -11.75168 -11.65174 -11.59683 -11.34562 -11.13261 -10.75489 -10.60643 -9.54836 -8.27759 -8.15114 -6.30670 0.57772 0.76574 1.36035 1.37810 1.49152 2.36660 2.57749 2.98959 3.07785 3.95121 4.03000 4.09216 4.12671 4.28348 4.30166 4.43720 4.53519 4.61400 4.71091 4.76530 4.80967 4.86570 4.94169 4.96916 5.01183 5.06717 5.09570 5.20130 5.29788 5.31876 5.35062 5.45766 5.53986 5.62065 5.65158 5.67885 5.92478 6.10022 6.30036 6.50771 6.76841 6.90325 7.33216 8.88831 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.043401 B = 0.003894 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.984499 B = 7188.450295 C = 7699.976968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.165 4.165 3 C -0.077 4.077 4 C -0.221 4.221 5 C 0.204 3.796 6 N -0.743 5.743 7 C 0.141 3.859 8 C -0.081 4.081 9 H 0.058 0.942 10 C -0.127 4.127 11 C -0.005 4.005 12 C -0.520 4.520 13 H 0.037 0.963 14 C 0.002 3.998 15 N -0.953 5.953 16 Si 0.946 3.054 17 H -0.268 1.268 18 H -0.246 1.246 19 H -0.287 1.287 20 C -0.210 4.210 21 C -0.049 4.049 22 C -0.115 4.115 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.133 0.867 27 H 0.116 0.884 28 H 0.402 0.598 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.038 0.962 33 H 0.061 0.939 34 H 0.019 0.981 35 H 0.021 0.979 36 H 0.265 0.735 37 H 0.126 0.874 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.775 -6.499 -1.770 25.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.167 4.167 3 C -0.095 4.095 4 C -0.243 4.243 5 C 0.100 3.900 6 N -0.372 5.372 7 C 0.016 3.984 8 C -0.100 4.100 9 H 0.077 0.923 10 C -0.184 4.184 11 C -0.043 4.043 12 C -0.558 4.558 13 H 0.055 0.945 14 C -0.194 4.194 15 N -0.594 5.594 16 Si 0.770 3.230 17 H -0.193 1.193 18 H -0.169 1.169 19 H -0.213 1.213 20 C -0.233 4.233 21 C -0.050 4.050 22 C -0.171 4.171 23 H 0.087 0.913 24 H 0.094 0.906 25 H 0.085 0.915 26 H 0.151 0.849 27 H 0.134 0.866 28 H 0.237 0.763 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.038 0.962 35 H 0.039 0.961 36 H 0.074 0.926 37 H 0.144 0.856 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -24.523 -6.227 -1.751 25.362 hybrid contribution 1.137 0.577 0.074 1.277 sum -23.387 -5.651 -1.677 24.118 Atomic orbital electron populations 1.20736 0.89804 1.03103 1.02356 1.19829 0.97170 0.92282 1.07382 1.20997 0.93050 0.98348 0.97117 1.20796 0.95125 0.96500 1.11910 1.18052 0.83694 0.94426 0.93824 1.44752 1.02361 1.08228 1.81857 1.21279 0.90591 0.85974 1.00521 1.21070 0.92583 0.97874 0.98427 0.92326 1.21641 1.00615 0.99647 0.96498 1.19516 0.93695 0.94485 0.96558 1.21419 0.91832 0.93584 1.48995 0.94516 1.25984 0.94799 1.04164 0.94460 1.70066 1.03164 1.33717 1.52498 0.85711 0.79391 0.79024 0.78861 1.19267 1.16921 1.21258 1.20623 0.94355 0.96165 1.12146 1.19813 0.92712 0.96054 0.96432 1.20901 1.00301 0.92880 1.03011 0.91262 0.90579 0.91543 0.84892 0.86568 0.76292 0.92891 0.92377 0.93174 0.94282 0.91989 0.96222 0.96115 0.92638 0.85634 0.90348 0.91286 0.89883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.50 9.60 71.24 0.68 -0.81 16 2 C -0.16 -3.47 5.88 -19.84 -0.12 -3.59 16 3 C -0.08 -1.77 9.69 22.25 0.22 -1.55 16 4 C -0.22 -5.90 9.31 22.40 0.21 -5.69 16 5 C 0.20 5.57 6.65 38.21 0.25 5.83 16 6 N -0.74 -20.60 5.46 -339.43 -1.85 -22.45 16 7 C 0.14 4.36 4.30 86.38 0.37 4.73 16 8 C -0.08 -2.99 2.37 -10.80 -0.03 -3.02 16 9 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 10 C -0.13 -4.48 8.88 71.98 0.64 -3.84 16 11 C 0.00 -0.21 3.52 29.85 0.10 -0.11 16 12 C -0.52 -29.44 8.96 25.60 0.23 -29.21 16 13 H 0.04 2.28 7.30 -2.91 -0.02 2.26 16 14 C 0.00 0.13 5.47 84.65 0.46 0.59 16 15 N -0.95 -59.90 13.96 21.45 0.30 -59.60 16 16 Si 0.95 44.12 27.47 68.60 1.88 46.01 16 17 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 18 H -0.25 -10.58 6.54 99.48 0.65 -9.93 16 19 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 20 C -0.21 -5.10 9.55 22.40 0.21 -4.89 16 21 C -0.05 -1.06 5.88 -19.88 -0.12 -1.17 16 22 C -0.11 -1.68 9.60 71.24 0.68 -0.99 16 23 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.08 0.90 5.94 -2.39 -0.01 0.89 16 25 H 0.07 0.86 8.08 -2.38 -0.02 0.84 16 26 H 0.13 2.48 8.06 -2.91 -0.02 2.46 16 27 H 0.12 3.09 6.74 -2.91 -0.02 3.07 16 28 H 0.40 10.31 7.67 -92.70 -0.71 9.60 16 29 H 0.05 1.66 7.95 -2.38 -0.02 1.64 16 30 H 0.06 1.77 7.95 -2.39 -0.02 1.75 16 31 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.04 1.60 6.95 -2.39 -0.02 1.58 16 33 H 0.06 1.81 7.18 -2.38 -0.02 1.80 16 34 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 35 H 0.02 0.91 7.57 -2.39 -0.02 0.90 16 36 H 0.26 15.57 8.31 -92.71 -0.77 14.79 16 37 H 0.13 2.69 8.06 -2.91 -0.02 2.67 16 38 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 39 H 0.07 0.93 8.09 -2.39 -0.02 0.91 16 40 H 0.08 0.97 5.94 -2.39 -0.01 0.96 16 Total: -1.00 -65.09 318.83 4.38 -60.71 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 0.24 Total: 19.06 kcal Atomic # 6 Polarization: -47.54 SS G_CDS: 3.81 Total: -43.73 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -1.55 Total: -82.05 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.88 Total: 46.01 kcal Total: -65.09 4.38 -60.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602495473.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.266 kcal (2) G-P(sol) polarization free energy of solvation -65.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds