Wall clock time and date at job start Thu Apr 9 2020 12:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50693 * 109.47086 * 2 1 4 4 C 1.38126 * 120.03914 * 264.99749 * 3 2 1 5 5 C 1.38272 * 120.07563 * 179.74621 * 4 3 2 6 6 C 1.38309 * 120.14681 * 0.25962 * 5 4 3 7 7 C 1.38076 * 120.07557 * 359.97438 * 6 5 4 8 8 C 1.38897 * 120.04058 * 85.25746 * 3 2 1 9 9 N 1.39675 * 120.07023 * 0.02562 * 8 3 2 10 10 C 1.46502 * 119.99909 * 180.23352 * 9 8 3 11 11 C 1.53003 * 109.46905 * 180.02562 * 10 9 8 12 12 H 1.08992 * 109.47044 * 304.99562 * 11 10 9 13 13 C 1.52992 * 109.47097 * 65.00011 * 11 10 9 14 14 C 1.53005 * 109.46800 * 185.00091 * 11 10 9 15 15 C 1.50695 * 109.46948 * 175.00132 * 14 11 10 16 16 H 1.07995 * 120.00468 * 359.97438 * 15 14 11 17 17 C 1.37880 * 120.00022 * 179.97438 * 15 14 11 18 18 N 1.31520 * 119.99594 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00141 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47093 * 60.00100 * 19 17 15 21 21 H 1.48501 * 109.47094 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47582 * 299.99885 * 19 17 15 23 23 H 1.08998 * 109.47098 * 59.99765 * 1 2 3 24 24 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47024 * 300.00231 * 1 2 3 26 26 H 1.08996 * 109.46732 * 240.00481 * 2 1 3 27 27 H 1.08998 * 109.47098 * 120.00235 * 2 1 3 28 28 H 1.08002 * 119.96463 * 0.03173 * 4 3 2 29 29 H 1.07996 * 119.92194 * 180.23481 * 5 4 3 30 30 H 1.07997 * 119.95926 * 179.97438 * 6 5 4 31 31 H 1.08006 * 120.03471 * 180.02562 * 7 6 5 32 32 H 0.96996 * 120.00284 * 0.23158 * 9 8 3 33 33 H 1.09006 * 109.46834 * 299.99981 * 10 9 8 34 34 H 1.08999 * 109.46847 * 59.99695 * 10 9 8 35 35 H 1.09006 * 109.47088 * 179.97438 * 13 11 10 36 36 H 1.09001 * 109.47308 * 299.99412 * 13 11 10 37 37 H 1.09004 * 109.47648 * 60.00283 * 13 11 10 38 38 H 1.09007 * 109.46842 * 294.99805 * 14 11 10 39 39 H 1.08992 * 109.47255 * 54.99561 * 14 11 10 40 40 H 0.97001 * 119.99303 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3611 2.0379 -1.1912 5 6 2.8171 3.3433 -1.1925 6 6 2.9507 4.0336 -0.0015 7 6 2.6284 3.4211 1.1932 8 6 2.1704 2.1095 1.1983 9 7 1.8445 1.4864 2.4051 10 6 1.9858 2.2160 3.6677 11 6 1.5666 1.3120 4.8287 12 1 0.5577 0.9392 4.6529 13 6 2.5355 0.1325 4.9322 14 6 1.5949 2.1112 6.1332 15 6 1.0654 1.2578 7.2567 16 1 0.7408 0.2467 7.0600 17 6 0.9954 1.7678 8.5358 18 7 1.3911 2.9989 8.7753 19 14 0.3384 0.7101 9.9283 20 1 1.1848 -0.5017 10.0711 21 1 0.3671 1.4853 11.1946 22 1 -1.0582 0.3058 9.6264 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.2576 1.5018 -2.1230 29 1 3.0699 3.8246 -2.1256 30 1 3.3075 5.0529 -0.0060 31 1 2.7326 3.9609 2.1229 32 1 1.5246 0.5708 2.4074 33 1 3.0253 2.5170 3.7989 34 1 1.3507 3.1016 3.6485 35 1 2.2371 -0.5113 5.7597 36 1 2.5154 -0.4369 4.0029 37 1 3.5446 0.5054 5.1081 38 1 2.6198 2.4088 6.3549 39 1 0.9731 3.0002 6.0281 40 1 1.3421 3.3575 9.6753 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602495840.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:22:17 Heat of formation + Delta-G solvation = -6.852940 kcal Electronic energy + Delta-G solvation = -17589.740278 eV Core-core repulsion = 14981.877676 eV Total energy + Delta-G solvation = -2607.862602 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.60566 -36.62388 -34.28444 -33.66025 -32.02102 -29.55106 -28.64561 -26.86072 -25.74765 -23.84164 -23.09011 -21.21581 -20.73759 -19.19567 -17.07604 -16.54893 -15.89321 -15.24703 -14.58669 -14.54143 -14.04966 -13.82972 -13.67203 -13.41793 -13.15117 -12.74489 -12.45326 -12.19650 -11.98352 -11.75127 -11.52752 -11.32963 -10.94366 -10.90759 -10.83377 -10.63293 -10.43317 -10.33364 -10.01714 -9.64243 -9.31646 -9.07691 -8.60498 -8.38354 -7.09856 -6.03072 -4.05083 1.57638 1.82673 3.30892 3.35850 3.37658 3.78460 4.03904 4.43541 4.86304 4.92121 5.19496 5.24470 5.32743 5.38613 5.47188 5.51448 5.61864 5.67408 5.73468 5.85922 5.89734 5.98069 5.98454 6.16099 6.19654 6.27665 6.35921 6.41613 6.55225 6.68186 6.79820 6.82509 6.98305 7.01602 7.10452 7.60240 7.63278 7.74218 7.95405 8.02279 8.37863 9.00334 9.58679 11.08302 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.034817 B = 0.004319 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.012083 B = 6480.860406 C = 7033.262864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.075 4.075 3 C -0.169 4.169 4 C -0.072 4.072 5 C -0.190 4.190 6 C -0.076 4.076 7 C -0.199 4.199 8 C 0.228 3.772 9 N -0.740 5.740 10 C 0.125 3.875 11 C -0.096 4.096 12 H 0.061 0.939 13 C -0.132 4.132 14 C 0.031 3.969 15 C -0.517 4.517 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.122 0.878 32 H 0.397 0.603 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.029 0.971 37 H 0.046 0.954 38 H 0.019 0.981 39 H 0.017 0.983 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.508 -2.701 -17.883 18.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 C -0.174 4.174 4 C -0.091 4.091 5 C -0.211 4.211 6 C -0.094 4.094 7 C -0.222 4.222 8 C 0.123 3.877 9 N -0.368 5.368 10 C 0.002 3.998 11 C -0.115 4.115 12 H 0.080 0.920 13 C -0.189 4.189 14 C -0.007 4.007 15 C -0.556 4.556 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.133 0.867 31 H 0.140 0.860 32 H 0.233 0.767 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.048 0.952 37 H 0.066 0.934 38 H 0.037 0.963 39 H 0.035 0.965 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.548 -2.455 -17.523 17.761 hybrid contribution -0.434 -0.736 0.901 1.242 sum 1.114 -3.191 -16.621 16.961 Atomic orbital electron populations 1.21772 0.95163 1.01325 1.02308 1.20306 0.95838 0.92975 1.02106 1.19319 1.09015 0.97030 0.92030 1.20691 0.97335 0.94695 0.96386 1.20769 1.07169 0.95508 0.97634 1.20843 0.97458 0.99000 0.92134 1.20702 1.08240 0.94423 0.98815 1.17745 0.92375 0.91737 0.85876 1.45090 1.72133 1.16206 1.03348 1.21632 1.00347 0.95432 0.82429 1.21435 0.98394 0.95993 0.95649 0.92048 1.21720 0.99245 0.98135 0.99798 1.19071 0.97474 0.94867 0.89266 1.21150 1.42249 0.99335 0.92825 0.92627 1.25010 0.95550 0.94995 0.98844 1.69953 1.47616 1.14665 1.21186 0.86675 0.79506 0.80398 0.81523 1.20272 1.21298 1.20278 0.92680 0.92729 0.92466 0.91403 0.91807 0.86817 0.87020 0.86650 0.86029 0.76679 0.92653 0.92569 0.91756 0.95200 0.93448 0.96314 0.96458 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.89 37.16 0.37 -1.17 16 2 C -0.07 -0.82 5.51 -27.88 -0.15 -0.97 16 3 C -0.17 -2.20 5.15 -104.42 -0.54 -2.73 16 4 C -0.07 -0.87 9.68 -39.61 -0.38 -1.25 16 5 C -0.19 -2.27 10.04 -39.54 -0.40 -2.67 16 6 C -0.08 -0.96 10.04 -39.61 -0.40 -1.36 16 7 C -0.20 -2.87 9.31 -39.39 -0.37 -3.24 16 8 C 0.23 3.34 6.63 -83.79 -0.56 2.78 16 9 N -0.74 -11.01 5.36 -58.63 -0.31 -11.33 16 10 C 0.13 2.12 4.30 -4.04 -0.02 2.10 16 11 C -0.10 -1.86 2.37 -90.62 -0.22 -2.08 16 12 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 13 C -0.13 -2.38 8.88 37.15 0.33 -2.05 16 14 C 0.03 0.76 4.45 -27.88 -0.12 0.64 16 15 C -0.52 -14.11 8.41 -34.44 -0.29 -14.40 16 16 H 0.06 1.47 7.06 -52.49 -0.37 1.10 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 19 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.65 8.05 -51.93 -0.42 0.23 16 27 H 0.06 0.71 6.80 -51.93 -0.35 0.35 16 28 H 0.11 1.11 8.06 -52.49 -0.42 0.68 16 29 H 0.11 1.09 8.06 -52.49 -0.42 0.66 16 30 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.12 1.75 6.74 -52.48 -0.35 1.40 16 32 H 0.40 5.56 5.76 -40.82 -0.23 5.32 16 33 H 0.06 0.95 7.95 -51.93 -0.41 0.54 16 34 H 0.06 0.98 7.95 -51.93 -0.41 0.56 16 35 H 0.06 1.25 6.95 -51.93 -0.36 0.89 16 36 H 0.03 0.45 7.18 -51.93 -0.37 0.08 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 323.53 15.07 4.88 4.88 Total: -1.00 -28.85 323.53 -9.21 -38.07 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -6.65 Total: 2.68 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: -2.84 Total: -24.89 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.42 Total: -37.06 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.85 -9.21 -38.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602495840.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.212 kcal (2) G-P(sol) polarization free energy of solvation -28.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds