Wall clock time and date at job start Thu Apr 9 2020 12:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50693 * 109.47086 * 2 1 4 4 C 1.38126 * 120.03914 * 264.99749 * 3 2 1 5 5 C 1.38272 * 120.07563 * 179.74621 * 4 3 2 6 6 C 1.38309 * 120.14681 * 0.25962 * 5 4 3 7 7 C 1.38076 * 120.07557 * 359.97438 * 6 5 4 8 8 C 1.38897 * 120.04058 * 85.25746 * 3 2 1 9 9 N 1.39675 * 120.07023 * 0.02562 * 8 3 2 10 10 C 1.46502 * 119.99909 * 180.23352 * 9 8 3 11 11 C 1.53003 * 109.46905 * 180.02562 * 10 9 8 12 12 H 1.08992 * 109.47044 * 304.99562 * 11 10 9 13 13 C 1.52992 * 109.47097 * 65.00011 * 11 10 9 14 14 C 1.53005 * 109.46800 * 185.00091 * 11 10 9 15 15 C 1.50695 * 109.46948 * 175.00132 * 14 11 10 16 16 H 1.07995 * 120.00468 * 359.97438 * 15 14 11 17 17 C 1.37880 * 120.00022 * 179.97438 * 15 14 11 18 18 N 1.31520 * 119.99594 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00141 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47093 * 60.00100 * 19 17 15 21 21 H 1.48501 * 109.47094 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47582 * 299.99885 * 19 17 15 23 23 H 1.08998 * 109.47098 * 59.99765 * 1 2 3 24 24 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47024 * 300.00231 * 1 2 3 26 26 H 1.08996 * 109.46732 * 240.00481 * 2 1 3 27 27 H 1.08998 * 109.47098 * 120.00235 * 2 1 3 28 28 H 1.08002 * 119.96463 * 0.03173 * 4 3 2 29 29 H 1.07996 * 119.92194 * 180.23481 * 5 4 3 30 30 H 1.07997 * 119.95926 * 179.97438 * 6 5 4 31 31 H 1.08006 * 120.03471 * 180.02562 * 7 6 5 32 32 H 0.96996 * 120.00284 * 0.23158 * 9 8 3 33 33 H 1.09006 * 109.46834 * 299.99981 * 10 9 8 34 34 H 1.08999 * 109.46847 * 59.99695 * 10 9 8 35 35 H 1.09006 * 109.47088 * 179.97438 * 13 11 10 36 36 H 1.09001 * 109.47308 * 299.99412 * 13 11 10 37 37 H 1.09004 * 109.47648 * 60.00283 * 13 11 10 38 38 H 1.09007 * 109.46842 * 294.99805 * 14 11 10 39 39 H 1.08992 * 109.47255 * 54.99561 * 14 11 10 40 40 H 0.97001 * 119.99303 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3611 2.0379 -1.1912 5 6 2.8171 3.3433 -1.1925 6 6 2.9507 4.0336 -0.0015 7 6 2.6284 3.4211 1.1932 8 6 2.1704 2.1095 1.1983 9 7 1.8445 1.4864 2.4051 10 6 1.9858 2.2160 3.6677 11 6 1.5666 1.3120 4.8287 12 1 0.5577 0.9392 4.6529 13 6 2.5355 0.1325 4.9322 14 6 1.5949 2.1112 6.1332 15 6 1.0654 1.2578 7.2567 16 1 0.7408 0.2467 7.0600 17 6 0.9954 1.7678 8.5358 18 7 1.3911 2.9989 8.7753 19 14 0.3384 0.7101 9.9283 20 1 1.1848 -0.5017 10.0711 21 1 0.3671 1.4853 11.1946 22 1 -1.0582 0.3058 9.6264 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.2576 1.5018 -2.1230 29 1 3.0699 3.8246 -2.1256 30 1 3.3075 5.0529 -0.0060 31 1 2.7326 3.9609 2.1229 32 1 1.5246 0.5708 2.4074 33 1 3.0253 2.5170 3.7989 34 1 1.3507 3.1016 3.6485 35 1 2.2371 -0.5113 5.7597 36 1 2.5154 -0.4369 4.0029 37 1 3.5446 0.5054 5.1081 38 1 2.6198 2.4088 6.3549 39 1 0.9731 3.0002 6.0281 40 1 1.3421 3.3575 9.6753 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602495840.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:22:16 Heat of formation + Delta-G solvation = -20.986880 kcal Electronic energy + Delta-G solvation = -17590.353171 eV Core-core repulsion = 14981.877676 eV Total energy + Delta-G solvation = -2608.475495 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.63930 -38.07407 -35.58586 -34.89678 -33.81818 -30.54269 -29.88792 -28.63352 -27.16186 -24.93299 -24.69297 -22.42397 -21.75016 -20.71413 -18.56147 -18.16585 -17.07269 -16.58285 -16.24961 -15.97569 -15.14323 -15.00126 -14.74773 -14.45853 -14.34762 -14.17129 -14.06224 -13.64562 -13.37396 -12.97858 -12.80147 -12.74851 -12.58274 -12.29006 -12.22765 -12.06671 -11.72644 -11.68852 -11.51441 -11.17523 -11.05091 -10.86362 -10.54167 -9.58377 -8.20410 -8.18503 -6.27946 0.58880 0.81501 1.40588 1.42788 1.50490 2.40383 2.60111 3.04217 3.15440 3.95384 4.02237 4.04649 4.15622 4.26032 4.37212 4.38561 4.56027 4.57710 4.70856 4.72678 4.75650 4.81329 4.90724 4.98047 5.10333 5.11208 5.19756 5.25830 5.29125 5.42225 5.43038 5.50000 5.55459 5.72340 5.74803 5.82076 5.84705 6.08269 6.25523 6.49388 6.86753 6.92002 7.40520 8.93380 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.034817 B = 0.004319 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.012083 B = 6480.860406 C = 7033.262864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.074 4.074 3 C -0.172 4.172 4 C -0.076 4.076 5 C -0.188 4.188 6 C -0.084 4.084 7 C -0.221 4.221 8 C 0.205 3.795 9 N -0.738 5.738 10 C 0.143 3.857 11 C -0.084 4.084 12 H 0.061 0.939 13 C -0.124 4.124 14 C 0.035 3.965 15 C -0.531 4.531 16 H 0.063 0.937 17 C 0.000 4.000 18 N -0.934 5.934 19 Si 0.961 3.039 20 H -0.267 1.267 21 H -0.286 1.286 22 H -0.268 1.268 23 H 0.058 0.942 24 H 0.069 0.931 25 H 0.038 0.962 26 H 0.087 0.913 27 H 0.061 0.939 28 H 0.141 0.859 29 H 0.138 0.862 30 H 0.133 0.867 31 H 0.110 0.890 32 H 0.402 0.598 33 H 0.049 0.951 34 H 0.044 0.956 35 H 0.050 0.950 36 H 0.061 0.939 37 H 0.041 0.959 38 H -0.006 1.006 39 H -0.010 1.010 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.295 -4.306 -19.688 20.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 C -0.177 4.177 4 C -0.094 4.094 5 C -0.208 4.208 6 C -0.103 4.103 7 C -0.244 4.244 8 C 0.101 3.899 9 N -0.368 5.368 10 C 0.018 3.982 11 C -0.103 4.103 12 H 0.080 0.920 13 C -0.181 4.181 14 C -0.003 4.003 15 C -0.569 4.569 16 H 0.081 0.919 17 C -0.198 4.198 18 N -0.575 5.575 19 Si 0.785 3.215 20 H -0.192 1.192 21 H -0.211 1.211 22 H -0.193 1.193 23 H 0.077 0.923 24 H 0.088 0.912 25 H 0.057 0.943 26 H 0.105 0.895 27 H 0.079 0.921 28 H 0.159 0.841 29 H 0.156 0.844 30 H 0.151 0.849 31 H 0.128 0.872 32 H 0.239 0.761 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.060 0.940 38 H 0.012 0.988 39 H 0.008 0.992 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.336 -4.072 -19.363 19.831 hybrid contribution -0.346 -0.176 1.350 1.405 sum 0.990 -4.249 -18.013 18.534 Atomic orbital electron populations 1.21738 0.94819 1.02102 1.01554 1.20356 0.96040 0.91811 1.02925 1.19625 1.08386 0.98002 0.91682 1.21072 0.96405 0.94903 0.97069 1.21147 1.05786 0.95591 0.98260 1.21112 0.97291 0.99984 0.91911 1.20824 1.09471 0.94854 0.99256 1.17954 0.93616 0.92126 0.86192 1.44807 1.73103 1.16254 1.02685 1.21217 0.99568 0.94598 0.82811 1.21197 0.99076 0.96173 0.93873 0.92011 1.21625 0.98227 0.97367 1.00896 1.18948 0.95077 0.94400 0.91835 1.21581 1.41807 0.99856 0.93683 0.91879 1.25934 0.95861 0.96240 1.01768 1.70095 1.49023 1.16550 1.21810 0.85567 0.79212 0.78720 0.77962 1.19178 1.21134 1.19280 0.92323 0.91200 0.94306 0.89453 0.92085 0.84096 0.84434 0.84943 0.87241 0.76113 0.93260 0.93748 0.93131 0.91987 0.94003 0.98809 0.99203 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.89 71.98 0.71 -1.99 16 2 C -0.07 -1.43 5.51 29.85 0.16 -1.27 16 3 C -0.17 -4.15 5.15 -19.74 -0.10 -4.25 16 4 C -0.08 -1.60 9.68 22.25 0.22 -1.38 16 5 C -0.19 -3.98 10.04 22.29 0.22 -3.76 16 6 C -0.08 -2.04 10.04 22.25 0.22 -1.82 16 7 C -0.22 -6.40 9.31 22.40 0.21 -6.19 16 8 C 0.21 5.88 6.63 38.21 0.25 6.13 16 9 N -0.74 -21.80 5.36 -339.40 -1.82 -23.62 16 10 C 0.14 4.96 4.30 86.38 0.37 5.33 16 11 C -0.08 -3.33 2.37 -10.79 -0.03 -3.35 16 12 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 13 C -0.12 -4.42 8.88 71.98 0.64 -3.78 16 14 C 0.03 1.80 4.45 29.85 0.13 1.94 16 15 C -0.53 -29.43 8.41 25.60 0.22 -29.21 16 16 H 0.06 3.33 7.06 -2.91 -0.02 3.31 16 17 C 0.00 -0.03 5.46 84.65 0.46 0.44 16 18 N -0.93 -56.65 13.29 21.45 0.28 -56.36 16 19 Si 0.96 43.90 29.54 68.60 2.03 45.92 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 21 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 22 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 23 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.09 1.36 8.05 -2.39 -0.02 1.34 16 27 H 0.06 1.22 6.80 -2.39 -0.02 1.20 16 28 H 0.14 2.17 8.06 -2.91 -0.02 2.14 16 29 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 30 H 0.13 2.62 8.06 -2.91 -0.02 2.60 16 31 H 0.11 3.32 6.74 -2.91 -0.02 3.30 16 32 H 0.40 10.85 5.76 -92.71 -0.53 10.32 16 33 H 0.05 1.76 7.95 -2.38 -0.02 1.74 16 34 H 0.04 1.63 7.95 -2.39 -0.02 1.61 16 35 H 0.05 1.93 6.95 -2.38 -0.02 1.91 16 36 H 0.06 1.80 7.18 -2.39 -0.02 1.78 16 37 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 38 H -0.01 -0.36 8.14 -2.38 -0.02 -0.38 16 39 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 40 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -62.59 323.53 4.65 -57.94 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.46 Total: 19.29 kcal Atomic # 6 Polarization: -46.86 SS G_CDS: 3.69 Total: -43.17 kcal Atomic # 7 Polarization: -78.45 SS G_CDS: -1.54 Total: -79.99 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -62.59 4.65 -57.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602495840.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.949 kcal (2) G-P(sol) polarization free energy of solvation -62.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds