Wall clock time and date at job start Thu Apr 9 2020 12:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38228 * 120.00201 * 2 1 4 4 C 1.38238 * 120.00120 * 180.23979 * 3 2 1 5 5 C 1.38234 * 119.99675 * 359.47825 * 4 3 2 6 6 C 1.50703 * 120.00257 * 180.27927 * 5 4 3 7 7 N 1.46900 * 109.46725 * 89.99983 * 6 5 4 8 8 C 1.46903 * 111.00117 * 180.02562 * 7 6 5 9 9 C 1.52993 * 109.47641 * 180.02562 * 8 7 6 10 10 H 1.09008 * 109.46843 * 55.00211 * 9 8 7 11 11 C 1.53001 * 109.47356 * 295.00514 * 9 8 7 12 12 C 1.52995 * 109.47524 * 175.00258 * 9 8 7 13 13 C 1.50697 * 109.47256 * 185.00473 * 12 9 8 14 14 H 1.08002 * 120.00354 * 359.97438 * 13 12 9 15 15 C 1.37879 * 120.00045 * 179.97438 * 13 12 9 16 16 N 1.31516 * 119.99881 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00173 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47336 * 60.00137 * 17 15 13 19 19 H 1.48508 * 109.47150 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47243 * 299.99968 * 17 15 13 21 21 C 1.38234 * 120.00240 * 0.26327 * 5 4 3 22 22 C 1.38234 * 119.99739 * 179.71804 * 2 1 3 23 23 H 1.09008 * 109.47424 * 270.28049 * 1 2 3 24 24 H 1.09002 * 109.47258 * 30.27549 * 1 2 3 25 25 H 1.08998 * 109.47359 * 150.27651 * 1 2 3 26 26 H 1.08004 * 120.00256 * 359.97438 * 3 2 1 27 27 H 1.08002 * 120.00519 * 179.76445 * 4 3 2 28 28 H 1.08988 * 109.47584 * 210.00457 * 6 5 4 29 29 H 1.09000 * 109.47013 * 330.00974 * 6 5 4 30 30 H 1.00899 * 111.00050 * 56.05612 * 7 6 5 31 31 H 1.09001 * 109.47022 * 300.00965 * 8 7 6 32 32 H 1.09008 * 109.46935 * 60.00197 * 8 7 6 33 33 H 1.08998 * 109.47226 * 179.97438 * 11 9 8 34 34 H 1.08994 * 109.47053 * 299.99516 * 11 9 8 35 35 H 1.09004 * 109.47009 * 59.99746 * 11 9 8 36 36 H 1.09012 * 109.46972 * 305.00353 * 12 9 8 37 37 H 1.09000 * 109.47018 * 65.00119 * 12 9 8 38 38 H 0.97000 * 120.00047 * 180.02562 * 16 15 13 39 39 H 1.07997 * 120.00460 * 180.02562 * 21 5 4 40 40 H 1.08001 * 120.00310 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0050 5 6 4.2717 -0.0001 0.0009 6 6 5.7787 -0.0002 0.0018 7 7 6.2674 0.0061 1.3871 8 6 7.7359 0.0067 1.4273 9 6 8.2064 0.0127 2.8831 10 1 7.7575 -0.8273 3.4134 11 6 7.7825 1.3225 3.5507 12 6 9.7306 -0.1123 2.9271 13 6 10.1838 -0.2300 4.3595 14 1 9.4574 -0.2166 5.1586 15 6 11.5259 -0.3549 4.6498 16 7 12.4104 -0.3717 3.6767 17 14 12.0877 -0.5001 6.4254 18 1 11.4739 -1.7035 7.0420 19 1 13.5672 -0.6215 6.4680 20 1 11.6690 0.7098 7.1776 21 6 3.5805 -1.1972 0.0063 22 6 2.1981 -1.1972 0.0059 23 1 -0.3634 0.0050 1.0277 24 1 -0.3634 0.8875 -0.5181 25 1 -0.3634 -0.8924 -0.5095 26 1 1.6582 2.1325 -0.0004 27 1 4.1206 2.1323 -0.0089 28 1 6.1423 -0.8924 -0.5078 29 1 6.1424 0.8874 -0.5158 30 1 5.8916 -0.7730 1.9066 31 1 8.1134 -0.8853 0.9274 32 1 8.1129 0.8947 0.9196 33 1 8.1173 1.3265 4.5880 34 1 8.2314 2.1624 3.0205 35 1 6.6966 1.4115 3.5194 36 1 10.0385 -1.0000 2.3744 37 1 10.1807 0.7715 2.4750 38 1 13.3545 -0.4599 3.8810 39 1 4.1204 -2.1325 0.0113 40 1 1.6581 -2.1325 0.0101 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602497558.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:22:19 Heat of formation + Delta-G solvation = -5.908717 kcal Electronic energy + Delta-G solvation = -16974.372883 eV Core-core repulsion = 14366.551225 eV Total energy + Delta-G solvation = -2607.821657 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.53798 -36.85953 -34.51582 -32.72448 -31.53506 -30.98237 -28.19572 -26.70906 -25.24381 -23.63260 -22.78161 -22.10140 -20.77107 -19.07384 -16.42784 -16.14363 -15.76028 -15.19654 -14.84405 -14.61385 -14.23900 -13.90739 -13.81382 -13.48796 -13.10301 -12.57201 -12.48165 -12.21167 -11.99196 -11.86359 -11.49183 -11.32192 -11.07955 -10.97536 -10.82453 -10.72888 -10.26941 -10.21663 -9.67347 -9.15456 -8.97629 -8.95963 -8.60015 -8.30719 -8.07603 -5.95712 -3.96791 1.24715 1.35576 3.35891 3.40032 3.42759 3.64952 4.47889 4.60444 4.69469 4.75310 4.93821 4.95780 5.08458 5.37477 5.39944 5.40996 5.44350 5.56830 5.65634 5.67202 5.77799 5.91195 6.02606 6.03298 6.18394 6.34054 6.43574 6.50077 6.57675 6.61514 6.72051 6.94678 7.03921 7.21226 7.22221 7.37663 7.66039 7.72026 7.87751 8.04629 8.48785 9.09424 9.66410 11.15854 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.049580 B = 0.003265 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.603795 B = 8574.211334 C = 8691.505934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.093 4.093 3 C -0.123 4.123 4 C -0.094 4.094 5 C -0.080 4.080 6 C 0.095 3.905 7 N -0.682 5.682 8 C 0.063 3.937 9 C -0.082 4.082 10 H 0.053 0.947 11 C -0.123 4.123 12 C 0.028 3.972 13 C -0.513 4.513 14 H 0.056 0.944 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.890 3.110 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.112 4.112 22 C -0.123 4.123 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.119 0.881 27 H 0.123 0.877 28 H 0.035 0.965 29 H 0.078 0.922 30 H 0.338 0.662 31 H 0.024 0.976 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.039 0.961 35 H 0.042 0.958 36 H 0.012 0.988 37 H 0.016 0.984 38 H 0.260 0.740 39 H 0.119 0.881 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.796 0.548 -9.118 22.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.094 4.094 3 C -0.141 4.141 4 C -0.113 4.113 5 C -0.081 4.081 6 C -0.034 4.034 7 N -0.313 5.313 8 C -0.065 4.065 9 C -0.101 4.101 10 H 0.071 0.929 11 C -0.180 4.180 12 C -0.010 4.010 13 C -0.551 4.551 14 H 0.074 0.926 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.718 3.282 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.130 4.130 22 C -0.141 4.141 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.137 0.863 27 H 0.141 0.859 28 H 0.053 0.947 29 H 0.096 0.904 30 H 0.155 0.845 31 H 0.043 0.957 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.031 0.969 37 H 0.034 0.966 38 H 0.069 0.931 39 H 0.137 0.863 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -20.631 1.225 -9.094 22.580 hybrid contribution 0.705 -1.043 0.699 1.440 sum -19.926 0.182 -8.395 21.623 Atomic orbital electron populations 1.20776 0.91469 1.02504 1.02226 1.19896 0.95899 0.93327 1.00230 1.21020 0.94254 0.97383 1.01449 1.21044 0.93829 0.97864 0.98527 1.19867 0.95492 0.93130 0.99593 1.20888 0.90046 1.01090 0.91333 1.60585 1.09428 1.50104 1.11143 1.22183 0.85296 0.99851 0.99196 1.21200 0.99354 0.97612 0.91958 0.92862 1.21584 0.98979 0.96794 1.00629 1.19118 0.87976 0.96920 0.96983 1.21209 0.91848 1.49444 0.92624 0.92617 1.25022 0.96981 0.95581 0.96979 1.69957 1.01509 1.50894 1.31390 0.86686 0.77400 0.78623 0.85452 1.20319 1.21379 1.20261 1.21060 0.94195 0.97632 1.00126 1.20964 0.94113 0.97396 1.01582 0.91280 0.91712 0.91752 0.86280 0.85884 0.94737 0.90403 0.84452 0.95737 0.91486 0.92808 0.94178 0.93936 0.96946 0.96551 0.93052 0.86323 0.86350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.01 36.00 0.36 -0.46 16 2 C -0.09 -0.93 5.88 -104.63 -0.62 -1.54 16 3 C -0.12 -1.28 9.70 -39.58 -0.38 -1.66 16 4 C -0.09 -1.09 9.70 -39.58 -0.38 -1.47 16 5 C -0.08 -0.97 5.39 -104.62 -0.56 -1.54 16 6 C 0.10 1.22 5.81 -4.97 -0.03 1.19 16 7 N -0.68 -10.21 5.94 -115.06 -0.68 -10.89 16 8 C 0.06 1.11 5.07 -3.83 -0.02 1.09 16 9 C -0.08 -1.71 2.48 -90.63 -0.22 -1.93 16 10 H 0.05 1.12 8.14 -51.92 -0.42 0.69 16 11 C -0.12 -2.44 8.89 37.16 0.33 -2.11 16 12 C 0.03 0.71 4.45 -27.89 -0.12 0.59 16 13 C -0.51 -14.54 8.41 -34.44 -0.29 -14.83 16 14 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 15 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 17 Si 0.89 21.91 29.54 -169.99 -5.02 16.88 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 C -0.11 -1.25 9.70 -39.58 -0.38 -1.63 16 22 C -0.12 -1.26 9.70 -39.58 -0.38 -1.64 16 23 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 24 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 25 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 26 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 27 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 28 H 0.03 0.43 8.08 -51.94 -0.42 0.01 16 29 H 0.08 0.98 8.09 -51.93 -0.42 0.56 16 30 H 0.34 4.94 8.72 -39.29 -0.34 4.59 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 33 H 0.05 1.14 6.95 -51.93 -0.36 0.78 16 34 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.04 0.76 7.75 -51.93 -0.40 0.36 16 36 H 0.01 0.34 8.14 -51.92 -0.42 -0.09 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 40 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 331.11 15.07 4.99 4.99 Total: -1.00 -30.27 331.11 -9.73 -40.00 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -6.94 Total: -0.02 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: -2.81 Total: -24.45 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.05 Total: -37.40 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.27 -9.73 -40.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602497558.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.091 kcal (2) G-P(sol) polarization free energy of solvation -30.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds