Wall clock time and date at job start Thu Apr 9 2020 12:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38228 * 120.00201 * 2 1 4 4 C 1.38238 * 120.00120 * 180.23979 * 3 2 1 5 5 C 1.38234 * 119.99675 * 359.47825 * 4 3 2 6 6 C 1.50703 * 120.00257 * 180.27927 * 5 4 3 7 7 N 1.46900 * 109.46725 * 89.99983 * 6 5 4 8 8 C 1.46903 * 111.00117 * 180.02562 * 7 6 5 9 9 C 1.52993 * 109.47641 * 180.02562 * 8 7 6 10 10 H 1.09008 * 109.46843 * 55.00211 * 9 8 7 11 11 C 1.53001 * 109.47356 * 295.00514 * 9 8 7 12 12 C 1.52995 * 109.47524 * 175.00258 * 9 8 7 13 13 C 1.50697 * 109.47256 * 185.00473 * 12 9 8 14 14 H 1.08002 * 120.00354 * 359.97438 * 13 12 9 15 15 C 1.37879 * 120.00045 * 179.97438 * 13 12 9 16 16 N 1.31516 * 119.99881 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00173 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47336 * 60.00137 * 17 15 13 19 19 H 1.48508 * 109.47150 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47243 * 299.99968 * 17 15 13 21 21 C 1.38234 * 120.00240 * 0.26327 * 5 4 3 22 22 C 1.38234 * 119.99739 * 179.71804 * 2 1 3 23 23 H 1.09008 * 109.47424 * 270.28049 * 1 2 3 24 24 H 1.09002 * 109.47258 * 30.27549 * 1 2 3 25 25 H 1.08998 * 109.47359 * 150.27651 * 1 2 3 26 26 H 1.08004 * 120.00256 * 359.97438 * 3 2 1 27 27 H 1.08002 * 120.00519 * 179.76445 * 4 3 2 28 28 H 1.08988 * 109.47584 * 210.00457 * 6 5 4 29 29 H 1.09000 * 109.47013 * 330.00974 * 6 5 4 30 30 H 1.00899 * 111.00050 * 56.05612 * 7 6 5 31 31 H 1.09001 * 109.47022 * 300.00965 * 8 7 6 32 32 H 1.09008 * 109.46935 * 60.00197 * 8 7 6 33 33 H 1.08998 * 109.47226 * 179.97438 * 11 9 8 34 34 H 1.08994 * 109.47053 * 299.99516 * 11 9 8 35 35 H 1.09004 * 109.47009 * 59.99746 * 11 9 8 36 36 H 1.09012 * 109.46972 * 305.00353 * 12 9 8 37 37 H 1.09000 * 109.47018 * 65.00119 * 12 9 8 38 38 H 0.97000 * 120.00047 * 180.02562 * 16 15 13 39 39 H 1.07997 * 120.00460 * 180.02562 * 21 5 4 40 40 H 1.08001 * 120.00310 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0050 5 6 4.2717 -0.0001 0.0009 6 6 5.7787 -0.0002 0.0018 7 7 6.2674 0.0061 1.3871 8 6 7.7359 0.0067 1.4273 9 6 8.2064 0.0127 2.8831 10 1 7.7575 -0.8273 3.4134 11 6 7.7825 1.3225 3.5507 12 6 9.7306 -0.1123 2.9271 13 6 10.1838 -0.2300 4.3595 14 1 9.4574 -0.2166 5.1586 15 6 11.5259 -0.3549 4.6498 16 7 12.4104 -0.3717 3.6767 17 14 12.0877 -0.5001 6.4254 18 1 11.4739 -1.7035 7.0420 19 1 13.5672 -0.6215 6.4680 20 1 11.6690 0.7098 7.1776 21 6 3.5805 -1.1972 0.0063 22 6 2.1981 -1.1972 0.0059 23 1 -0.3634 0.0050 1.0277 24 1 -0.3634 0.8875 -0.5181 25 1 -0.3634 -0.8924 -0.5095 26 1 1.6582 2.1325 -0.0004 27 1 4.1206 2.1323 -0.0089 28 1 6.1423 -0.8924 -0.5078 29 1 6.1424 0.8874 -0.5158 30 1 5.8916 -0.7730 1.9066 31 1 8.1134 -0.8853 0.9274 32 1 8.1129 0.8947 0.9196 33 1 8.1173 1.3265 4.5880 34 1 8.2314 2.1624 3.0205 35 1 6.6966 1.4115 3.5194 36 1 10.0385 -1.0000 2.3744 37 1 10.1807 0.7715 2.4750 38 1 13.3545 -0.4599 3.8810 39 1 4.1204 -2.1325 0.0113 40 1 1.6581 -2.1325 0.0101 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602497558.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:22:19 Heat of formation + Delta-G solvation = -22.225022 kcal Electronic energy + Delta-G solvation = -16975.080411 eV Core-core repulsion = 14366.551225 eV Total energy + Delta-G solvation = -2608.529185 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.36019 -38.29808 -35.96511 -34.36640 -32.92866 -31.77469 -29.40412 -28.46315 -26.62871 -25.02804 -23.74024 -23.52491 -21.64305 -20.74562 -18.49355 -17.21690 -16.69988 -16.60257 -16.02856 -15.94457 -15.60007 -15.31595 -14.65339 -14.45180 -14.24775 -14.20312 -13.74478 -13.34548 -13.24747 -13.01942 -12.84140 -12.77086 -12.67446 -12.52570 -12.20866 -12.05655 -11.83249 -11.77435 -11.48989 -11.09915 -10.92484 -10.52867 -9.78645 -9.50656 -9.24653 -8.17362 -6.26617 0.42510 0.54717 1.40168 1.43056 1.50718 2.42227 2.80275 3.15904 3.44864 3.87431 3.95559 4.10845 4.18866 4.19519 4.25993 4.38986 4.53124 4.60557 4.68025 4.70408 4.86628 4.88669 4.90820 4.93387 5.01142 5.02246 5.23818 5.28222 5.32287 5.45804 5.50298 5.53355 5.56018 5.74084 5.76073 5.81010 5.88782 6.03090 6.17745 6.31374 6.45720 6.89166 7.41575 8.94582 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.049580 B = 0.003265 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.603795 B = 8574.211334 C = 8691.505934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.097 4.097 3 C -0.131 4.131 4 C -0.107 4.107 5 C -0.097 4.097 6 C 0.099 3.901 7 N -0.680 5.680 8 C 0.077 3.923 9 C -0.074 4.074 10 H 0.053 0.947 11 C -0.112 4.112 12 C 0.033 3.967 13 C -0.530 4.530 14 H 0.061 0.939 15 C -0.003 4.003 16 N -0.936 5.936 17 Si 0.961 3.039 18 H -0.267 1.267 19 H -0.284 1.284 20 H -0.267 1.267 21 C -0.121 4.121 22 C -0.130 4.130 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.137 0.863 27 H 0.124 0.876 28 H 0.039 0.961 29 H 0.078 0.922 30 H 0.341 0.659 31 H 0.020 0.980 32 H 0.063 0.937 33 H 0.037 0.963 34 H 0.035 0.965 35 H 0.064 0.936 36 H -0.014 1.014 37 H -0.010 1.010 38 H 0.262 0.738 39 H 0.126 0.874 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.784 0.470 -8.491 24.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.097 4.097 3 C -0.149 4.149 4 C -0.126 4.126 5 C -0.097 4.097 6 C -0.029 4.029 7 N -0.311 5.311 8 C -0.052 4.052 9 C -0.093 4.093 10 H 0.071 0.929 11 C -0.170 4.170 12 C -0.005 4.005 13 C -0.568 4.568 14 H 0.079 0.921 15 C -0.200 4.200 16 N -0.577 5.577 17 Si 0.786 3.214 18 H -0.192 1.192 19 H -0.210 1.210 20 H -0.192 1.192 21 C -0.139 4.139 22 C -0.148 4.148 23 H 0.094 0.906 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.155 0.845 27 H 0.142 0.858 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.159 0.841 31 H 0.038 0.962 32 H 0.082 0.918 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.083 0.917 36 H 0.005 0.995 37 H 0.009 0.991 38 H 0.071 0.929 39 H 0.144 0.856 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -22.645 1.147 -8.470 24.204 hybrid contribution 1.261 -1.022 0.448 1.684 sum -21.383 0.126 -8.022 22.839 Atomic orbital electron populations 1.20827 0.89442 1.03625 1.02960 1.20284 0.97503 0.93017 0.98922 1.21290 0.93946 0.98543 1.01094 1.21192 0.94625 0.97805 0.98977 1.19821 0.94800 0.93848 1.01243 1.20864 0.90906 1.01279 0.89854 1.60516 1.07366 1.50336 1.12832 1.21880 0.87157 0.99542 0.96657 1.21013 0.95681 0.98193 0.94404 0.92887 1.21476 1.00261 0.95934 0.99304 1.19009 0.91567 0.94403 0.95510 1.21620 0.92337 1.49125 0.93767 0.92124 1.25958 0.97179 0.95133 1.01709 1.70095 1.01875 1.51869 1.33827 0.85558 0.76945 0.79147 0.79766 1.19215 1.20987 1.19239 1.21234 0.94903 0.97637 1.00154 1.21260 0.93896 0.98517 1.01106 0.90604 0.90672 0.90652 0.84508 0.85754 0.94328 0.90388 0.84064 0.96194 0.91803 0.94372 0.94558 0.91691 0.99521 0.99121 0.92920 0.85627 0.84446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 10.01 71.24 0.71 -0.59 16 2 C -0.10 -1.72 5.88 -19.87 -0.12 -1.84 16 3 C -0.13 -2.49 9.70 22.27 0.22 -2.28 16 4 C -0.11 -2.37 9.70 22.27 0.22 -2.15 16 5 C -0.10 -2.24 5.39 -19.87 -0.11 -2.35 16 6 C 0.10 2.47 5.81 85.56 0.50 2.97 16 7 N -0.68 -19.73 5.94 -517.93 -3.08 -22.81 16 8 C 0.08 2.68 5.07 86.30 0.44 3.12 16 9 C -0.07 -3.08 2.48 -10.80 -0.03 -3.11 16 10 H 0.05 2.21 8.14 -2.38 -0.02 2.19 16 11 C -0.11 -4.41 8.89 71.98 0.64 -3.77 16 12 C 0.03 1.74 4.45 29.85 0.13 1.88 16 13 C -0.53 -30.40 8.41 25.60 0.22 -30.19 16 14 H 0.06 3.34 7.06 -2.91 -0.02 3.32 16 15 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 16 N -0.94 -57.82 13.29 21.45 0.28 -57.53 16 17 Si 0.96 44.90 29.54 68.60 2.03 46.93 16 18 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 19 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 21 C -0.12 -2.54 9.70 22.27 0.22 -2.33 16 22 C -0.13 -2.41 9.70 22.27 0.22 -2.19 16 23 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 24 H 0.07 0.73 8.09 -2.39 -0.02 0.71 16 25 H 0.07 0.72 8.09 -2.39 -0.02 0.70 16 26 H 0.14 2.02 8.06 -2.91 -0.02 1.99 16 27 H 0.12 2.60 8.06 -2.91 -0.02 2.57 16 28 H 0.04 0.93 8.08 -2.39 -0.02 0.91 16 29 H 0.08 1.92 8.09 -2.39 -0.02 1.90 16 30 H 0.34 9.58 8.72 -89.69 -0.78 8.80 16 31 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 33 H 0.04 1.59 6.95 -2.39 -0.02 1.57 16 34 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.06 2.24 7.75 -2.39 -0.02 2.22 16 36 H -0.01 -0.78 8.14 -2.38 -0.02 -0.80 16 37 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 38 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 39 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 40 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -64.59 331.11 3.15 -61.44 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 0.21 Total: 14.50 kcal Atomic # 6 Polarization: -46.23 SS G_CDS: 3.71 Total: -42.52 kcal Atomic # 7 Polarization: -77.55 SS G_CDS: -2.79 Total: -80.34 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -64.59 3.15 -61.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602497558.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.214 kcal (2) G-P(sol) polarization free energy of solvation -64.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds