Wall clock time and date at job start Thu Apr 9 2020 12:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47342 * 2 1 4 4 C 1.53002 * 109.47136 * 120.00210 * 2 1 3 5 5 C 1.50704 * 109.46906 * 294.99861 * 4 2 1 6 6 H 1.08004 * 119.99838 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99820 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99845 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00340 * 359.97438 * 7 5 4 10 10 H 1.48492 * 109.46951 * 89.99736 * 9 7 5 11 11 H 1.48490 * 109.47244 * 210.00587 * 9 7 5 12 12 H 1.48505 * 109.46577 * 330.00042 * 9 7 5 13 13 C 1.53007 * 109.47194 * 239.99816 * 2 1 3 14 14 N 1.46898 * 109.46764 * 65.00211 * 13 2 1 15 15 C 1.46906 * 110.99888 * 179.97438 * 14 13 2 16 16 H 1.08999 * 109.46727 * 325.00012 * 15 14 13 17 17 C 1.52995 * 109.46889 * 85.00162 * 15 14 13 18 18 C 1.50706 * 109.47211 * 204.99964 * 15 14 13 19 19 C 1.38235 * 119.99753 * 319.72781 * 18 15 14 20 20 C 1.38233 * 119.99610 * 179.78517 * 19 18 15 21 21 C 1.38238 * 120.00223 * 0.44637 * 20 19 18 22 22 C 1.38240 * 119.99579 * 359.80738 * 21 20 19 23 23 C 1.38230 * 120.00283 * 359.97438 * 22 21 20 24 24 H 1.09001 * 109.46792 * 60.00109 * 1 2 3 25 25 H 1.09002 * 109.47342 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46901 * 300.00429 * 1 2 3 27 27 H 1.09001 * 109.47153 * 54.99452 * 4 2 1 28 28 H 1.08992 * 109.47216 * 174.99961 * 4 2 1 29 29 H 0.96994 * 120.00238 * 180.02562 * 8 7 5 30 30 H 1.08995 * 109.47210 * 305.00164 * 13 2 1 31 31 H 1.08997 * 109.46954 * 185.00148 * 13 2 1 32 32 H 1.00902 * 111.00533 * 56.04323 * 14 13 2 33 33 H 1.09002 * 109.47311 * 59.99901 * 17 15 14 34 34 H 1.09002 * 109.46959 * 180.02562 * 17 15 14 35 35 H 1.09003 * 109.47335 * 299.99780 * 17 15 14 36 36 H 1.08002 * 120.00134 * 359.97438 * 19 18 15 37 37 H 1.08001 * 120.00326 * 180.27206 * 20 19 18 38 38 H 1.07993 * 120.00115 * 179.83273 * 21 20 19 39 39 H 1.07998 * 119.99804 * 180.02562 * 22 21 20 40 40 H 1.07999 * 120.00200 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9932 -0.4017 3.7283 8 7 1.6449 0.2772 4.7994 9 14 2.9636 -1.9884 3.9028 10 1 4.4169 -1.6850 3.8779 11 1 2.6162 -2.6420 5.1901 12 1 2.6287 -2.8994 2.7789 13 6 2.0400 -0.7213 -1.2493 14 7 1.6514 0.0374 -2.4456 15 6 2.1258 -0.6266 -3.6672 16 1 3.0896 -1.0975 -3.4738 17 6 1.1141 -1.6918 -4.0944 18 6 2.2765 0.3929 -4.7669 19 6 1.3327 1.3915 -4.9176 20 6 1.4733 2.3292 -5.9235 21 6 2.5528 2.2627 -6.7845 22 6 3.4938 1.2609 -6.6369 23 6 3.3557 0.3259 -5.6282 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6053 -1.7198 1.2952 28 1 3.1262 -0.7995 1.2056 29 1 1.8928 -0.0453 5.6799 30 1 1.6054 -1.7198 -1.2952 31 1 3.1263 -0.7995 -1.2056 32 1 1.9882 0.9873 -2.3967 33 1 0.1503 -1.2207 -4.2877 34 1 1.4663 -2.1847 -5.0005 35 1 1.0051 -2.4291 -3.2990 36 1 0.4871 1.4409 -4.2476 37 1 0.7382 3.1120 -6.0387 38 1 2.6612 2.9937 -7.5720 39 1 4.3374 1.2092 -7.3092 40 1 4.0911 -0.4565 -5.5127 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602504962.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:22:41 Heat of formation + Delta-G solvation = 3.197580 kcal Electronic energy + Delta-G solvation = -17446.700099 eV Core-core repulsion = 14839.273321 eV Total energy + Delta-G solvation = -2607.426779 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.62426 -37.11772 -34.80687 -32.35600 -31.06436 -30.69725 -28.96924 -27.31200 -25.31936 -23.43333 -22.71974 -21.78610 -20.30706 -19.12715 -17.07484 -16.66530 -15.77084 -15.47259 -14.75251 -14.43062 -14.19600 -13.86661 -13.68337 -13.42391 -13.10870 -12.68484 -12.41063 -12.20689 -11.97858 -11.88669 -11.67420 -11.45384 -11.09943 -10.93372 -10.80607 -10.60942 -10.35045 -9.89926 -9.63411 -9.41410 -9.04476 -9.02241 -8.81688 -8.49632 -8.20496 -6.00067 -3.96827 1.22742 1.30133 3.32501 3.40048 3.43871 3.67373 4.30830 4.48561 4.60644 4.82003 4.88354 5.03937 5.25641 5.33597 5.36955 5.40419 5.50230 5.61249 5.73630 5.79357 5.83232 5.95642 5.96841 6.05812 6.24407 6.33249 6.34244 6.40684 6.44311 6.52878 6.62313 6.87941 6.89936 7.06467 7.16912 7.28614 7.32782 7.50176 7.61846 7.85107 8.59715 9.05857 9.62936 11.13446 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.037838 B = 0.004015 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.816643 B = 6971.927964 C = 7127.770840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.074 4.074 3 H 0.059 0.941 4 C -0.009 4.009 5 C -0.512 4.512 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.878 3.122 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.061 3.939 14 N -0.679 5.679 15 C 0.121 3.879 16 H 0.048 0.952 17 C -0.133 4.133 18 C -0.085 4.085 19 C -0.099 4.099 20 C -0.123 4.123 21 C -0.126 4.126 22 C -0.124 4.124 23 C -0.117 4.117 24 H 0.044 0.956 25 H 0.038 0.962 26 H 0.058 0.942 27 H 0.016 0.984 28 H 0.007 0.993 29 H 0.262 0.738 30 H 0.067 0.933 31 H 0.024 0.976 32 H 0.341 0.659 33 H 0.062 0.938 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.133 0.867 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.700 -0.090 -22.883 22.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.092 4.092 3 H 0.077 0.923 4 C -0.047 4.047 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.067 4.067 14 N -0.311 5.311 15 C 0.011 3.989 16 H 0.066 0.934 17 C -0.191 4.191 18 C -0.085 4.085 19 C -0.117 4.117 20 C -0.141 4.141 21 C -0.144 4.144 22 C -0.142 4.142 23 C -0.135 4.135 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.077 0.923 27 H 0.034 0.966 28 H 0.026 0.974 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.159 0.841 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.151 0.849 37 H 0.139 0.861 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.077 -0.388 -22.711 22.740 hybrid contribution 1.593 -0.623 0.304 1.737 sum 2.670 -1.011 -22.407 22.588 Atomic orbital electron populations 1.21589 0.95233 1.00607 1.00654 1.21005 0.96383 0.98989 0.92863 0.92271 1.19614 0.95337 0.96244 0.93515 1.21140 1.35235 1.09511 0.89102 0.90830 1.25031 0.95736 0.96888 0.95965 1.69915 1.47252 1.39340 0.97998 0.86804 0.80577 0.84576 0.77467 1.20462 1.21478 1.19075 1.22234 0.97007 0.97882 0.89620 1.60657 1.63811 1.05749 1.00868 1.20456 0.97067 0.93006 0.88366 0.93408 1.21759 0.99258 0.97680 1.00384 1.20042 0.94911 0.96580 0.96985 1.21145 0.99025 0.93938 0.97635 1.21204 0.98126 0.99093 0.95638 1.21145 0.95054 0.98623 0.99549 1.21086 0.99236 0.95443 0.98400 1.21056 0.97708 0.99182 0.95569 0.93693 0.94245 0.92294 0.96617 0.97436 0.92851 0.91445 0.95819 0.84089 0.91886 0.92985 0.92253 0.84927 0.86126 0.86397 0.86322 0.86345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.36 8.89 37.16 0.33 -2.03 16 2 C -0.07 -1.45 2.48 -90.62 -0.22 -1.67 16 3 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 4 C -0.01 -0.22 3.52 -27.88 -0.10 -0.32 16 5 C -0.51 -14.56 8.96 -34.44 -0.31 -14.87 16 6 H 0.07 2.25 7.30 -52.48 -0.38 1.86 16 7 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.91 -28.16 13.96 55.43 0.77 -27.38 16 9 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 13 C 0.06 0.99 4.87 -3.82 -0.02 0.98 16 14 N -0.68 -9.39 5.16 -107.95 -0.56 -9.95 16 15 C 0.12 1.46 2.82 -68.86 -0.19 1.26 16 16 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 17 C -0.13 -1.51 9.39 37.16 0.35 -1.16 16 18 C -0.08 -0.96 4.71 -104.62 -0.49 -1.46 16 19 C -0.10 -1.10 9.01 -39.58 -0.36 -1.46 16 20 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 21 C -0.13 -1.17 10.05 -39.58 -0.40 -1.57 16 22 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 23 C -0.12 -1.22 9.67 -39.59 -0.38 -1.60 16 24 H 0.04 0.76 7.75 -51.93 -0.40 0.36 16 25 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.06 1.26 6.95 -51.93 -0.36 0.89 16 27 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 28 H 0.01 0.18 7.57 -51.93 -0.39 -0.22 16 29 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 30 H 0.07 1.10 7.44 -51.93 -0.39 0.71 16 31 H 0.02 0.39 8.05 -51.93 -0.42 -0.03 16 32 H 0.34 4.69 8.00 -39.29 -0.31 4.38 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.70 7.45 -51.93 -0.39 0.32 16 36 H 0.13 1.49 7.73 -52.49 -0.41 1.08 16 37 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.12 1.08 8.04 -52.49 -0.42 0.66 16 LS Contribution 323.45 15.07 4.87 4.87 Total: -1.00 -30.24 323.45 -9.04 -39.28 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.77 Total: 1.16 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: -2.69 Total: -25.29 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.22 Total: -37.33 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.24 -9.04 -39.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602504962.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.475 kcal (2) G-P(sol) polarization free energy of solvation -30.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds