Wall clock time and date at job start Thu Apr 9 2020 12:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47342 * 2 1 4 4 C 1.53002 * 109.47136 * 120.00210 * 2 1 3 5 5 C 1.50704 * 109.46906 * 294.99861 * 4 2 1 6 6 H 1.08004 * 119.99838 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99820 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99845 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00340 * 359.97438 * 7 5 4 10 10 H 1.48492 * 109.46951 * 89.99736 * 9 7 5 11 11 H 1.48490 * 109.47244 * 210.00587 * 9 7 5 12 12 H 1.48505 * 109.46577 * 330.00042 * 9 7 5 13 13 C 1.53007 * 109.47194 * 239.99816 * 2 1 3 14 14 N 1.46898 * 109.46764 * 65.00211 * 13 2 1 15 15 C 1.46906 * 110.99888 * 179.97438 * 14 13 2 16 16 H 1.08999 * 109.46727 * 325.00012 * 15 14 13 17 17 C 1.52995 * 109.46889 * 85.00162 * 15 14 13 18 18 C 1.50706 * 109.47211 * 204.99964 * 15 14 13 19 19 C 1.38235 * 119.99753 * 319.72781 * 18 15 14 20 20 C 1.38233 * 119.99610 * 179.78517 * 19 18 15 21 21 C 1.38238 * 120.00223 * 0.44637 * 20 19 18 22 22 C 1.38240 * 119.99579 * 359.80738 * 21 20 19 23 23 C 1.38230 * 120.00283 * 359.97438 * 22 21 20 24 24 H 1.09001 * 109.46792 * 60.00109 * 1 2 3 25 25 H 1.09002 * 109.47342 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46901 * 300.00429 * 1 2 3 27 27 H 1.09001 * 109.47153 * 54.99452 * 4 2 1 28 28 H 1.08992 * 109.47216 * 174.99961 * 4 2 1 29 29 H 0.96994 * 120.00238 * 180.02562 * 8 7 5 30 30 H 1.08995 * 109.47210 * 305.00164 * 13 2 1 31 31 H 1.08997 * 109.46954 * 185.00148 * 13 2 1 32 32 H 1.00902 * 111.00533 * 56.04323 * 14 13 2 33 33 H 1.09002 * 109.47311 * 59.99901 * 17 15 14 34 34 H 1.09002 * 109.46959 * 180.02562 * 17 15 14 35 35 H 1.09003 * 109.47335 * 299.99780 * 17 15 14 36 36 H 1.08002 * 120.00134 * 359.97438 * 19 18 15 37 37 H 1.08001 * 120.00326 * 180.27206 * 20 19 18 38 38 H 1.07993 * 120.00115 * 179.83273 * 21 20 19 39 39 H 1.07998 * 119.99804 * 180.02562 * 22 21 20 40 40 H 1.07999 * 120.00200 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9932 -0.4017 3.7283 8 7 1.6449 0.2772 4.7994 9 14 2.9636 -1.9884 3.9028 10 1 4.4169 -1.6850 3.8779 11 1 2.6162 -2.6420 5.1901 12 1 2.6287 -2.8994 2.7789 13 6 2.0400 -0.7213 -1.2493 14 7 1.6514 0.0374 -2.4456 15 6 2.1258 -0.6266 -3.6672 16 1 3.0896 -1.0975 -3.4738 17 6 1.1141 -1.6918 -4.0944 18 6 2.2765 0.3929 -4.7669 19 6 1.3327 1.3915 -4.9176 20 6 1.4733 2.3292 -5.9235 21 6 2.5528 2.2627 -6.7845 22 6 3.4938 1.2609 -6.6369 23 6 3.3557 0.3259 -5.6282 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6053 -1.7198 1.2952 28 1 3.1262 -0.7995 1.2056 29 1 1.8928 -0.0453 5.6799 30 1 1.6054 -1.7198 -1.2952 31 1 3.1263 -0.7995 -1.2056 32 1 1.9882 0.9873 -2.3967 33 1 0.1503 -1.2207 -4.2877 34 1 1.4663 -2.1847 -5.0005 35 1 1.0051 -2.4291 -3.2990 36 1 0.4871 1.4409 -4.2476 37 1 0.7382 3.1120 -6.0387 38 1 2.6612 2.9937 -7.5720 39 1 4.3374 1.2092 -7.3092 40 1 4.0911 -0.4565 -5.5127 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602504962.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:22:40 Heat of formation + Delta-G solvation = -13.645189 kcal Electronic energy + Delta-G solvation = -17447.430456 eV Core-core repulsion = 14839.273321 eV Total energy + Delta-G solvation = -2608.157136 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.43718 -38.37125 -36.22923 -34.34611 -32.05757 -31.67647 -29.95457 -29.12546 -26.72141 -24.64999 -23.76306 -23.04784 -21.26019 -20.69758 -18.94002 -17.79528 -16.81606 -16.43018 -16.21838 -15.86164 -15.32695 -15.27165 -14.76527 -14.67219 -14.19518 -14.15982 -13.70105 -13.57904 -13.23024 -13.04739 -12.89085 -12.76461 -12.62914 -12.27126 -12.08976 -11.86322 -11.80009 -11.64073 -11.42388 -11.15957 -11.01972 -10.73251 -9.77449 -9.60844 -9.32866 -8.25856 -6.28194 0.46555 0.54920 1.35595 1.37682 1.49497 2.37883 2.90628 3.09322 3.23163 3.73807 4.06176 4.14058 4.21692 4.25941 4.34540 4.39324 4.46623 4.56246 4.67870 4.74491 4.79726 4.88755 4.93915 4.95922 5.01631 5.11725 5.16297 5.22366 5.37032 5.39624 5.42728 5.55550 5.60349 5.67238 5.67929 5.73022 5.74408 6.13482 6.19268 6.35386 6.48052 6.79488 7.35321 8.91019 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.037838 B = 0.004015 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.816643 B = 6971.927964 C = 7127.770840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.069 4.069 3 H 0.048 0.952 4 C -0.007 4.007 5 C -0.519 4.519 6 H 0.034 0.966 7 C 0.000 4.000 8 N -0.954 5.954 9 Si 0.948 3.052 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.247 1.247 13 C 0.075 3.925 14 N -0.678 5.678 15 C 0.123 3.877 16 H 0.049 0.951 17 C -0.129 4.129 18 C -0.097 4.097 19 C -0.113 4.113 20 C -0.130 4.130 21 C -0.129 4.129 22 C -0.127 4.127 23 C -0.127 4.127 24 H 0.066 0.934 25 H 0.043 0.957 26 H 0.025 0.975 27 H 0.018 0.982 28 H 0.013 0.987 29 H 0.264 0.736 30 H 0.072 0.928 31 H 0.026 0.974 32 H 0.341 0.659 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.126 0.874 37 H 0.136 0.864 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.863 -1.300 -25.215 25.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.088 4.088 3 H 0.066 0.934 4 C -0.044 4.044 5 C -0.557 4.557 6 H 0.052 0.948 7 C -0.196 4.196 8 N -0.596 5.596 9 Si 0.772 3.228 10 H -0.193 1.193 11 H -0.212 1.212 12 H -0.170 1.170 13 C -0.054 4.054 14 N -0.310 5.310 15 C 0.014 3.986 16 H 0.067 0.933 17 C -0.187 4.187 18 C -0.097 4.097 19 C -0.131 4.131 20 C -0.148 4.148 21 C -0.147 4.147 22 C -0.145 4.145 23 C -0.145 4.145 24 H 0.085 0.915 25 H 0.062 0.938 26 H 0.045 0.955 27 H 0.037 0.963 28 H 0.032 0.968 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.159 0.841 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.144 0.856 37 H 0.154 0.846 38 H 0.159 0.841 39 H 0.159 0.841 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.237 -1.595 -25.072 25.222 hybrid contribution 1.182 -0.126 0.976 1.538 sum 3.419 -1.721 -24.096 24.398 Atomic orbital electron populations 1.21483 0.94953 1.00666 1.00052 1.20880 0.96558 0.98341 0.93049 0.93385 1.19567 0.95643 0.95942 0.93296 1.21458 1.34294 1.08637 0.91274 0.94777 1.26009 0.97085 1.00939 0.95519 1.70073 1.49128 1.41655 0.98716 0.85683 0.79129 0.79942 0.78039 1.19346 1.21152 1.17023 1.21952 0.96914 0.97643 0.88864 1.60603 1.63965 1.05656 1.00747 1.20460 0.97165 0.93293 0.87683 0.93304 1.21727 0.98864 0.97303 1.00796 1.20011 0.95684 0.96758 0.97295 1.21183 0.99056 0.94632 0.98262 1.21453 0.98834 0.99176 0.95367 1.21481 0.94507 0.98924 0.99740 1.21408 0.99873 0.94945 0.98299 1.21262 0.97641 0.99875 0.95721 0.91548 0.93787 0.95537 0.96323 0.96834 0.92683 0.90996 0.95597 0.84065 0.92423 0.91594 0.92789 0.85647 0.84632 0.84122 0.84127 0.85271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.36 8.89 71.98 0.64 -3.72 16 2 C -0.07 -2.70 2.48 -10.79 -0.03 -2.73 16 3 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 4 C -0.01 -0.31 3.52 29.85 0.10 -0.21 16 5 C -0.52 -30.17 8.96 25.60 0.23 -29.94 16 6 H 0.03 2.19 7.30 -2.91 -0.02 2.17 16 7 C 0.00 0.03 5.47 84.65 0.46 0.49 16 8 N -0.95 -60.88 13.96 21.45 0.30 -60.58 16 9 Si 0.95 44.96 27.47 68.60 1.88 46.84 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 12 H -0.25 -10.84 6.54 99.48 0.65 -10.19 16 13 C 0.08 2.32 4.87 86.31 0.42 2.74 16 14 N -0.68 -17.81 5.16 -495.44 -2.55 -20.36 16 15 C 0.12 2.77 2.82 44.17 0.12 2.89 16 16 H 0.05 1.10 7.66 -2.39 -0.02 1.08 16 17 C -0.13 -2.70 9.39 71.98 0.68 -2.03 16 18 C -0.10 -2.06 4.71 -19.86 -0.09 -2.15 16 19 C -0.11 -2.38 9.01 22.27 0.20 -2.18 16 20 C -0.13 -2.35 10.05 22.27 0.22 -2.13 16 21 C -0.13 -2.07 10.05 22.27 0.22 -1.84 16 22 C -0.13 -2.08 10.05 22.27 0.22 -1.86 16 23 C -0.13 -2.38 9.67 22.27 0.22 -2.16 16 24 H 0.07 2.22 7.75 -2.39 -0.02 2.20 16 25 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.03 1.15 6.95 -2.39 -0.02 1.13 16 27 H 0.02 0.86 7.20 -2.39 -0.02 0.85 16 28 H 0.01 0.62 7.57 -2.39 -0.02 0.60 16 29 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 30 H 0.07 2.18 7.44 -2.39 -0.02 2.16 16 31 H 0.03 0.79 8.05 -2.39 -0.02 0.77 16 32 H 0.34 9.04 8.00 -89.69 -0.72 8.32 16 33 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.05 1.18 7.45 -2.39 -0.02 1.16 16 36 H 0.13 2.73 7.73 -2.91 -0.02 2.71 16 37 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 38 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 39 H 0.14 1.62 8.06 -2.91 -0.02 1.59 16 40 H 0.13 2.06 8.04 -2.91 -0.02 2.03 16 Total: -1.00 -65.57 323.45 3.47 -62.09 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.22 Total: 16.82 kcal Atomic # 6 Polarization: -48.44 SS G_CDS: 3.63 Total: -44.81 kcal Atomic # 7 Polarization: -78.69 SS G_CDS: -2.26 Total: -80.94 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.88 Total: 46.84 kcal Total: -65.57 3.47 -62.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602504962.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.449 kcal (2) G-P(sol) polarization free energy of solvation -65.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds