Wall clock time and date at job start Thu Apr 9 2020 12:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50688 * 1 3 3 C 1.38259 * 120.00175 * 2 1 4 4 C 1.38214 * 120.00111 * 180.02562 * 3 2 1 5 5 C 1.38256 * 119.99933 * 359.76623 * 4 3 2 6 6 C 1.38215 * 120.00097 * 0.46323 * 5 4 3 7 7 C 1.50699 * 120.00156 * 179.78668 * 6 5 4 8 8 N 1.46902 * 109.47194 * 269.72742 * 7 6 5 9 9 C 1.46895 * 111.00052 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.47259 * 180.02562 * 9 8 7 11 11 H 1.08999 * 109.47296 * 305.00382 * 10 9 8 12 12 C 1.52996 * 109.47239 * 65.00243 * 10 9 8 13 13 C 1.52999 * 109.47323 * 185.00191 * 10 9 8 14 14 C 1.50702 * 109.47522 * 175.00325 * 13 10 9 15 15 H 1.08002 * 119.99446 * 359.97438 * 14 13 10 16 16 C 1.37871 * 120.00072 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99826 * 179.72119 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46758 * 269.72576 * 18 16 14 20 20 H 1.48499 * 109.47026 * 29.72423 * 18 16 14 21 21 H 1.48496 * 109.47474 * 149.72459 * 18 16 14 22 22 C 1.38213 * 120.00128 * 179.97438 * 2 1 3 23 23 H 1.09005 * 109.47236 * 270.02421 * 1 2 3 24 24 H 1.09001 * 109.47351 * 30.01973 * 1 2 3 25 25 H 1.08998 * 109.47834 * 150.02219 * 1 2 3 26 26 H 1.07992 * 119.99952 * 359.97438 * 3 2 1 27 27 H 1.08003 * 120.00290 * 179.97438 * 4 3 2 28 28 H 1.08002 * 120.00237 * 180.25644 * 5 4 3 29 29 H 1.08999 * 109.47137 * 149.73309 * 7 6 5 30 30 H 1.08994 * 109.46978 * 29.72968 * 7 6 5 31 31 H 1.00901 * 111.00083 * 56.04537 * 8 7 6 32 32 H 1.09004 * 109.47170 * 60.00126 * 9 8 7 33 33 H 1.08999 * 109.47606 * 300.00470 * 9 8 7 34 34 H 1.09001 * 109.47667 * 179.97438 * 12 10 9 35 35 H 1.09008 * 109.47037 * 300.00381 * 12 10 9 36 36 H 1.09007 * 109.47198 * 59.99899 * 12 10 9 37 37 H 1.09000 * 109.47527 * 54.99924 * 13 10 9 38 38 H 1.09001 * 109.47054 * 295.00014 * 13 10 9 39 39 H 0.96999 * 120.00128 * 180.27192 * 17 16 14 40 40 H 1.08006 * 119.99822 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5803 1.1973 -0.0005 5 6 4.2716 0.0000 0.0038 6 6 3.5806 -1.1970 -0.0010 7 6 4.3340 -2.5021 -0.0011 8 7 4.5779 -2.9267 -1.3861 9 6 5.3126 -4.1981 -1.4254 10 6 5.5477 -4.6065 -2.8810 11 1 4.5941 -4.6391 -3.4079 12 6 6.4678 -3.5864 -3.5547 13 6 6.2014 -5.9891 -2.9236 14 6 6.3212 -6.4444 -4.3552 15 1 5.9660 -5.8110 -5.1547 16 6 6.8830 -7.6698 -4.6442 17 7 6.9825 -8.0695 -5.8932 18 14 7.4966 -8.7656 -3.2613 19 1 8.9236 -8.4614 -2.9850 20 1 6.6916 -8.5169 -2.0385 21 1 7.3623 -10.1894 -3.6612 22 6 2.1980 -1.1969 0.0005 23 1 -0.3634 0.0004 1.0277 24 1 -0.3634 0.8898 -0.5141 25 1 -0.3635 -0.8901 -0.5135 26 1 1.6583 2.1326 -0.0004 27 1 4.1204 2.1326 -0.0010 28 1 5.3516 -0.0001 0.0076 29 1 3.7453 -3.2616 0.5133 30 1 5.2867 -2.3716 0.5120 31 1 5.0664 -2.2110 -1.9030 32 1 4.7310 -4.9695 -0.9207 33 1 6.2721 -4.0790 -0.9223 34 1 6.6357 -3.8775 -4.5916 35 1 6.0021 -2.6013 -3.5243 36 1 7.4215 -3.5538 -3.0278 37 1 5.5887 -6.6981 -2.3669 38 1 7.1935 -5.9359 -2.4752 39 1 7.3741 -8.9333 -6.0963 40 1 1.6579 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602509534.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:22:47 Heat of formation + Delta-G solvation = -1.931163 kcal Electronic energy + Delta-G solvation = -17082.067284 eV Core-core repulsion = 14474.418106 eV Total energy + Delta-G solvation = -2607.649178 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.57960 -37.03724 -34.46618 -32.77899 -32.09361 -30.80806 -27.61446 -27.07789 -26.15778 -24.28914 -22.17995 -21.81289 -20.57663 -18.98129 -16.91624 -16.56662 -15.93410 -15.28064 -14.82499 -14.72350 -14.02883 -13.90171 -13.73500 -13.43310 -13.11945 -12.82214 -12.56125 -12.34433 -12.14931 -11.91261 -11.84665 -11.62197 -11.12905 -11.05588 -10.95814 -10.71082 -10.40248 -9.79794 -9.71302 -9.45915 -9.04519 -8.88069 -8.74180 -8.49913 -8.18431 -6.00099 -3.96974 1.23275 1.31034 3.32563 3.40146 3.43935 3.61683 4.48515 4.51249 4.65227 4.72089 4.86024 5.02186 5.18958 5.24493 5.33447 5.38179 5.41629 5.55524 5.58595 5.65988 5.69325 5.74876 5.97072 5.97800 6.03384 6.15781 6.35478 6.38596 6.46542 6.47536 6.57132 6.77744 6.91993 6.98282 7.08100 7.24040 7.34205 7.49651 7.61018 7.84785 8.59575 9.05741 9.62810 11.13397 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.041373 B = 0.003544 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.601444 B = 7897.708127 C = 7956.302413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.090 4.090 3 C -0.125 4.125 4 C -0.118 4.118 5 C -0.122 4.122 6 C -0.072 4.072 7 C 0.095 3.905 8 N -0.684 5.684 9 C 0.061 3.939 10 C -0.076 4.076 11 H 0.072 0.928 12 C -0.136 4.136 13 C -0.008 4.008 14 C -0.513 4.513 15 H 0.074 0.926 16 C 0.064 3.936 17 N -0.905 5.905 18 Si 0.878 3.122 19 H -0.279 1.279 20 H -0.266 1.266 21 H -0.289 1.289 22 C -0.098 4.098 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.118 0.882 27 H 0.119 0.881 28 H 0.118 0.882 29 H 0.078 0.922 30 H 0.035 0.965 31 H 0.341 0.659 32 H 0.067 0.933 33 H 0.024 0.976 34 H 0.068 0.932 35 H 0.034 0.966 36 H 0.040 0.960 37 H 0.015 0.985 38 H 0.009 0.991 39 H 0.262 0.738 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.586 17.291 14.433 24.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.090 4.090 3 C -0.143 4.143 4 C -0.136 4.136 5 C -0.140 4.140 6 C -0.073 4.073 7 C -0.034 4.034 8 N -0.315 5.315 9 C -0.067 4.067 10 C -0.094 4.094 11 H 0.090 0.910 12 C -0.193 4.193 13 C -0.046 4.046 14 C -0.551 4.551 15 H 0.092 0.908 16 C -0.136 4.136 17 N -0.545 5.545 18 Si 0.706 3.294 19 H -0.205 1.205 20 H -0.191 1.191 21 H -0.215 1.215 22 C -0.117 4.117 23 H 0.086 0.914 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.136 0.864 27 H 0.137 0.863 28 H 0.136 0.864 29 H 0.097 0.903 30 H 0.053 0.947 31 H 0.160 0.840 32 H 0.086 0.914 33 H 0.042 0.958 34 H 0.087 0.913 35 H 0.053 0.947 36 H 0.059 0.941 37 H 0.033 0.967 38 H 0.027 0.973 39 H 0.072 0.928 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.135 16.825 14.257 23.871 hybrid contribution 1.375 -0.380 0.863 1.667 sum -7.760 16.445 15.120 23.649 Atomic orbital electron populations 1.20785 0.91293 1.02855 1.02136 1.19929 0.96052 0.93195 0.99800 1.20995 0.94265 0.97385 1.01691 1.21072 0.94307 0.97826 1.00413 1.21051 0.99699 0.92179 1.01091 1.19848 0.93927 0.94577 0.98937 1.20899 0.97814 0.93439 0.91255 1.60602 1.53301 1.06224 1.11414 1.22194 0.95032 0.90487 0.99022 1.21031 0.99551 0.96591 0.92274 0.90991 1.21755 0.98269 0.96873 1.02439 1.19603 0.95046 0.91954 0.98009 1.21141 1.39504 1.03009 0.91401 0.90819 1.25031 0.95579 0.97764 0.95248 1.69917 1.45824 1.20960 1.17791 0.86799 0.79476 0.79875 0.83240 1.20455 1.19064 1.21477 1.20943 0.93537 0.97583 0.99615 0.91354 0.91677 0.91371 0.86402 0.86252 0.86416 0.90345 0.94703 0.84032 0.91426 0.95801 0.91310 0.94703 0.94098 0.96671 0.97258 0.92843 0.85907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.01 36.00 0.36 -0.53 16 2 C -0.09 -0.93 5.88 -104.63 -0.62 -1.54 16 3 C -0.13 -1.22 9.70 -39.58 -0.38 -1.61 16 4 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 5 C -0.12 -1.32 9.70 -39.58 -0.38 -1.71 16 6 C -0.07 -0.86 5.39 -104.62 -0.56 -1.42 16 7 C 0.09 1.17 5.81 -4.98 -0.03 1.14 16 8 N -0.68 -9.98 6.49 -115.06 -0.75 -10.73 16 9 C 0.06 1.01 5.14 -3.83 -0.02 0.99 16 10 C -0.08 -1.51 2.55 -90.62 -0.23 -1.74 16 11 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 12 C -0.14 -2.53 8.77 37.16 0.33 -2.21 16 13 C -0.01 -0.20 3.52 -27.88 -0.10 -0.30 16 14 C -0.51 -14.59 8.96 -34.44 -0.31 -14.90 16 15 H 0.07 2.25 7.30 -52.49 -0.38 1.87 16 16 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 17 N -0.91 -28.16 13.96 55.43 0.77 -27.39 16 18 Si 0.88 21.94 27.47 -169.99 -4.67 17.27 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 C -0.10 -1.13 9.36 -39.58 -0.37 -1.50 16 23 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 25 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 26 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 27 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 28 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 29 H 0.08 0.95 8.09 -51.93 -0.42 0.53 16 30 H 0.03 0.41 8.08 -51.93 -0.42 -0.01 16 31 H 0.34 4.85 6.97 -39.29 -0.27 4.58 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 1.44 6.95 -51.93 -0.36 1.08 16 35 H 0.03 0.55 6.68 -51.92 -0.35 0.21 16 36 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 38 H 0.01 0.22 7.57 -51.93 -0.39 -0.18 16 39 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 40 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 LS Contribution 325.24 15.07 4.90 4.90 Total: -1.00 -30.70 325.24 -9.34 -40.04 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -6.78 Total: 1.00 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: -2.81 Total: -25.10 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.03 Total: -38.12 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.70 -9.34 -40.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602509534.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.108 kcal (2) G-P(sol) polarization free energy of solvation -30.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds