Wall clock time and date at job start Thu Apr 9 2020 12:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50688 * 1 3 3 C 1.38259 * 120.00175 * 2 1 4 4 C 1.38214 * 120.00111 * 180.02562 * 3 2 1 5 5 C 1.38256 * 119.99933 * 359.76623 * 4 3 2 6 6 C 1.38215 * 120.00097 * 0.46323 * 5 4 3 7 7 C 1.50699 * 120.00156 * 179.78668 * 6 5 4 8 8 N 1.46902 * 109.47194 * 269.72742 * 7 6 5 9 9 C 1.46895 * 111.00052 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.47259 * 180.02562 * 9 8 7 11 11 H 1.08999 * 109.47296 * 305.00382 * 10 9 8 12 12 C 1.52996 * 109.47239 * 65.00243 * 10 9 8 13 13 C 1.52999 * 109.47323 * 185.00191 * 10 9 8 14 14 C 1.50702 * 109.47522 * 175.00325 * 13 10 9 15 15 H 1.08002 * 119.99446 * 359.97438 * 14 13 10 16 16 C 1.37871 * 120.00072 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99826 * 179.72119 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46758 * 269.72576 * 18 16 14 20 20 H 1.48499 * 109.47026 * 29.72423 * 18 16 14 21 21 H 1.48496 * 109.47474 * 149.72459 * 18 16 14 22 22 C 1.38213 * 120.00128 * 179.97438 * 2 1 3 23 23 H 1.09005 * 109.47236 * 270.02421 * 1 2 3 24 24 H 1.09001 * 109.47351 * 30.01973 * 1 2 3 25 25 H 1.08998 * 109.47834 * 150.02219 * 1 2 3 26 26 H 1.07992 * 119.99952 * 359.97438 * 3 2 1 27 27 H 1.08003 * 120.00290 * 179.97438 * 4 3 2 28 28 H 1.08002 * 120.00237 * 180.25644 * 5 4 3 29 29 H 1.08999 * 109.47137 * 149.73309 * 7 6 5 30 30 H 1.08994 * 109.46978 * 29.72968 * 7 6 5 31 31 H 1.00901 * 111.00083 * 56.04537 * 8 7 6 32 32 H 1.09004 * 109.47170 * 60.00126 * 9 8 7 33 33 H 1.08999 * 109.47606 * 300.00470 * 9 8 7 34 34 H 1.09001 * 109.47667 * 179.97438 * 12 10 9 35 35 H 1.09008 * 109.47037 * 300.00381 * 12 10 9 36 36 H 1.09007 * 109.47198 * 59.99899 * 12 10 9 37 37 H 1.09000 * 109.47527 * 54.99924 * 13 10 9 38 38 H 1.09001 * 109.47054 * 295.00014 * 13 10 9 39 39 H 0.96999 * 120.00128 * 180.27192 * 17 16 14 40 40 H 1.08006 * 119.99822 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5803 1.1973 -0.0005 5 6 4.2716 0.0000 0.0038 6 6 3.5806 -1.1970 -0.0010 7 6 4.3340 -2.5021 -0.0011 8 7 4.5779 -2.9267 -1.3861 9 6 5.3126 -4.1981 -1.4254 10 6 5.5477 -4.6065 -2.8810 11 1 4.5941 -4.6391 -3.4079 12 6 6.4678 -3.5864 -3.5547 13 6 6.2014 -5.9891 -2.9236 14 6 6.3212 -6.4444 -4.3552 15 1 5.9660 -5.8110 -5.1547 16 6 6.8830 -7.6698 -4.6442 17 7 6.9825 -8.0695 -5.8932 18 14 7.4966 -8.7656 -3.2613 19 1 8.9236 -8.4614 -2.9850 20 1 6.6916 -8.5169 -2.0385 21 1 7.3623 -10.1894 -3.6612 22 6 2.1980 -1.1969 0.0005 23 1 -0.3634 0.0004 1.0277 24 1 -0.3634 0.8898 -0.5141 25 1 -0.3635 -0.8901 -0.5135 26 1 1.6583 2.1326 -0.0004 27 1 4.1204 2.1326 -0.0010 28 1 5.3516 -0.0001 0.0076 29 1 3.7453 -3.2616 0.5133 30 1 5.2867 -2.3716 0.5120 31 1 5.0664 -2.2110 -1.9030 32 1 4.7310 -4.9695 -0.9207 33 1 6.2721 -4.0790 -0.9223 34 1 6.6357 -3.8775 -4.5916 35 1 6.0021 -2.6013 -3.5243 36 1 7.4215 -3.5538 -3.0278 37 1 5.5887 -6.6981 -2.3669 38 1 7.1935 -5.9359 -2.4752 39 1 7.3741 -8.9333 -6.0963 40 1 1.6579 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602509534.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:22:46 Heat of formation + Delta-G solvation = -19.631366 kcal Electronic energy + Delta-G solvation = -17082.834822 eV Core-core repulsion = 14474.418106 eV Total energy + Delta-G solvation = -2608.416716 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.37391 -38.40296 -35.87667 -34.31161 -33.32369 -31.91007 -29.43338 -27.85778 -27.34239 -25.67393 -23.56937 -22.92992 -21.43113 -20.59558 -18.95960 -17.49360 -16.98006 -16.47391 -16.15552 -15.73242 -15.70844 -15.05274 -14.86022 -14.51357 -14.42839 -13.98223 -13.86285 -13.54216 -13.34484 -13.24089 -12.87988 -12.79851 -12.68727 -12.51047 -12.09680 -11.93795 -11.80626 -11.70541 -11.47414 -11.18059 -11.04976 -10.73533 -9.70814 -9.53954 -9.27938 -8.25809 -6.28353 0.44213 0.52605 1.36014 1.38281 1.50130 2.38168 2.80215 3.09383 3.44107 3.83383 3.95952 4.10061 4.17881 4.20702 4.29125 4.39601 4.43180 4.52371 4.63865 4.68364 4.77297 4.82515 4.84864 4.88516 4.99083 5.02653 5.04687 5.21329 5.28491 5.33632 5.37267 5.54263 5.59092 5.68558 5.70253 5.73127 5.76253 6.07309 6.18351 6.34855 6.46620 6.79330 7.35201 8.91103 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.041373 B = 0.003544 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.601444 B = 7897.708127 C = 7956.302413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.099 4.099 3 C -0.130 4.130 4 C -0.123 4.123 5 C -0.132 4.132 6 C -0.087 4.087 7 C 0.099 3.901 8 N -0.690 5.690 9 C 0.074 3.926 10 C -0.072 4.072 11 H 0.050 0.950 12 C -0.129 4.129 13 C -0.005 4.005 14 C -0.520 4.520 15 H 0.033 0.967 16 C 0.000 4.000 17 N -0.955 5.955 18 Si 0.949 3.051 19 H -0.267 1.267 20 H -0.246 1.246 21 H -0.286 1.286 22 C -0.117 4.117 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.140 0.860 27 H 0.141 0.859 28 H 0.128 0.872 29 H 0.078 0.922 30 H 0.045 0.955 31 H 0.343 0.657 32 H 0.067 0.933 33 H 0.035 0.965 34 H 0.034 0.966 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.017 0.983 38 H 0.018 0.982 39 H 0.264 0.736 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.583 18.487 16.885 26.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.099 4.099 3 C -0.148 4.148 4 C -0.140 4.140 5 C -0.151 4.151 6 C -0.087 4.087 7 C -0.029 4.029 8 N -0.322 5.322 9 C -0.054 4.054 10 C -0.091 4.091 11 H 0.069 0.931 12 C -0.186 4.186 13 C -0.043 4.043 14 C -0.558 4.558 15 H 0.052 0.948 16 C -0.196 4.196 17 N -0.596 5.596 18 Si 0.773 3.227 19 H -0.192 1.192 20 H -0.170 1.170 21 H -0.212 1.212 22 C -0.136 4.136 23 H 0.098 0.902 24 H 0.095 0.905 25 H 0.084 0.916 26 H 0.158 0.842 27 H 0.159 0.841 28 H 0.146 0.854 29 H 0.097 0.903 30 H 0.063 0.937 31 H 0.162 0.838 32 H 0.086 0.914 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.035 0.965 38 H 0.036 0.964 39 H 0.073 0.927 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.143 18.045 16.724 26.247 hybrid contribution 1.308 -0.648 0.026 1.460 sum -7.835 17.397 16.750 25.389 Atomic orbital electron populations 1.20821 0.89775 1.03359 1.02998 1.20247 0.97366 0.93055 0.99237 1.21335 0.94536 0.98110 1.00855 1.21398 0.94653 0.98442 0.99540 1.21251 1.00384 0.92245 1.01183 1.19864 0.94112 0.94637 1.00126 1.20884 0.98391 0.93868 0.89797 1.60526 1.52921 1.05588 1.13145 1.21921 0.95902 0.91550 0.96075 1.20894 0.98315 0.95003 0.94877 0.93107 1.21662 0.98843 0.97908 1.00227 1.19553 0.95846 0.94181 0.94755 1.21462 1.38693 1.02603 0.93010 0.94844 1.26020 0.95958 0.99592 0.98020 1.70078 1.47383 1.21762 1.20391 0.85668 0.79466 0.77409 0.80150 1.19233 1.16994 1.21201 1.21088 0.93760 0.98166 1.00571 0.90250 0.90464 0.91594 0.84215 0.84074 0.85404 0.90325 0.93694 0.83779 0.91418 0.94660 0.94677 0.91903 0.93036 0.96506 0.96374 0.92673 0.86163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 10.01 71.23 0.71 -0.86 16 2 C -0.10 -1.89 5.88 -19.87 -0.12 -2.01 16 3 C -0.13 -2.25 9.70 22.27 0.22 -2.03 16 4 C -0.12 -2.14 10.05 22.27 0.22 -1.92 16 5 C -0.13 -2.62 9.70 22.27 0.22 -2.41 16 6 C -0.09 -1.94 5.39 -19.87 -0.11 -2.05 16 7 C 0.10 2.28 5.81 85.56 0.50 2.77 16 8 N -0.69 -18.99 6.49 -517.95 -3.36 -22.35 16 9 C 0.07 2.32 5.14 86.30 0.44 2.77 16 10 C -0.07 -2.83 2.55 -10.80 -0.03 -2.86 16 11 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 12 C -0.13 -4.74 8.77 71.98 0.63 -4.11 16 13 C -0.01 -0.26 3.52 29.85 0.10 -0.15 16 14 C -0.52 -30.29 8.96 25.60 0.23 -30.07 16 15 H 0.03 2.15 7.30 -2.91 -0.02 2.13 16 16 C 0.00 0.00 5.47 84.65 0.46 0.47 16 17 N -0.95 -60.98 13.96 21.45 0.30 -60.68 16 18 Si 0.95 44.89 27.47 68.60 1.88 46.78 16 19 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 20 H -0.25 -10.79 6.54 99.48 0.65 -10.14 16 21 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 22 C -0.12 -2.59 9.36 22.27 0.21 -2.38 16 23 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 24 H 0.08 0.88 8.09 -2.39 -0.02 0.86 16 25 H 0.07 0.94 8.09 -2.39 -0.02 0.92 16 26 H 0.14 1.72 8.06 -2.91 -0.02 1.69 16 27 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 28 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 29 H 0.08 1.79 8.09 -2.39 -0.02 1.77 16 30 H 0.04 0.95 8.08 -2.39 -0.02 0.93 16 31 H 0.34 9.10 6.97 -89.69 -0.63 8.48 16 32 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 33 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.03 1.50 6.95 -2.39 -0.02 1.48 16 35 H 0.06 1.93 6.68 -2.38 -0.02 1.91 16 36 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 37 H 0.02 0.78 7.20 -2.39 -0.02 0.76 16 38 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 39 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 40 H 0.12 2.59 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -66.94 325.24 2.83 -64.11 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.31 Total: 16.98 kcal Atomic # 6 Polarization: -48.53 SS G_CDS: 3.70 Total: -44.83 kcal Atomic # 7 Polarization: -79.97 SS G_CDS: -3.06 Total: -83.04 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.88 Total: 46.78 kcal Total: -66.94 2.83 -64.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602509534.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.483 kcal (2) G-P(sol) polarization free energy of solvation -66.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds